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Search of human proteins with 45356151
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|45356151 non-SMC condensin II complex, subunit D3 [Homo
sapiens]
(1498 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 2971 0.0
gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens] 58 6e-08
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 45 7e-04
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 39 0.049
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 39 0.049
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H... 38 0.084
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 37 0.14
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 37 0.14
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 37 0.14
gi|217416394 hyaluronan-mediated motility receptor isoform b [Ho... 37 0.14
gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [... 37 0.19
gi|223029422 SKI-like isoform 3 [Homo sapiens] 36 0.32
gi|223029420 SKI-like isoform 2 [Homo sapiens] 36 0.32
gi|223029418 SKI-like isoform 1 [Homo sapiens] 36 0.32
gi|209862789 microtubule associated monoxygenase, calponin and L... 36 0.32
gi|22027651 adaptor-related protein complex 1 beta 1 subunit iso... 36 0.32
gi|22027653 adaptor-related protein complex 1 beta 1 subunit iso... 36 0.32
gi|7662070 Ral GEF with PH domain and SH3 binding motif 1 [Homo ... 35 0.42
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 35 0.54
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.54
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.54
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 35 0.54
gi|121114302 cullin 4B isoform 2 [Homo sapiens] 35 0.71
gi|121114298 cullin 4B isoform 1 [Homo sapiens] 35 0.71
gi|239747614 PREDICTED: similar to Putative uncharacterized prot... 35 0.71
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 35 0.71
gi|71773106 adaptor-related protein complex 2, beta 1 subunit is... 35 0.71
gi|4557469 adaptor-related protein complex 2, beta 1 subunit iso... 35 0.71
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 34 0.93
gi|7706497 UMP-CMP kinase 1 isoform a [Homo sapiens] 34 0.93
>gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens]
Length = 1498
Score = 2971 bits (7703), Expect = 0.0
Identities = 1498/1498 (100%), Positives = 1498/1498 (100%)
Query: 1 MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEAEIIETGLAAFTKLYES 60
MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEAEIIETGLAAFTKLYES
Sbjct: 1 MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEAEIIETGLAAFTKLYES 60
Query: 61 LLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLY 120
LLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLY
Sbjct: 61 LLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLY 120
Query: 121 FLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRG 180
FLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRG
Sbjct: 121 FLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRG 180
Query: 181 KPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQ 240
KPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQ
Sbjct: 181 KPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQ 240
Query: 241 NCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPELAYYGLYLLCSPIHGEGDKVISCVF 300
NCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPELAYYGLYLLCSPIHGEGDKVISCVF
Sbjct: 241 NCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPELAYYGLYLLCSPIHGEGDKVISCVF 300
Query: 301 HQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQAVQFISALVDELKESIFPVVRILLQHI 360
HQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQAVQFISALVDELKESIFPVVRILLQHI
Sbjct: 301 HQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQAVQFISALVDELKESIFPVVRILLQHI 360
Query: 361 CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL 420
CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL
Sbjct: 361 CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL 420
Query: 421 ELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHCLELTVTSAS 480
ELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHCLELTVTSAS
Sbjct: 421 ELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHCLELTVTSAS 480
Query: 481 ESILELLINSPTFSVIESHPGTLLRNSSAFSYQRQTSNRSEPSGEINIDSSGETVGSGER 540
ESILELLINSPTFSVIESHPGTLLRNSSAFSYQRQTSNRSEPSGEINIDSSGETVGSGER
Sbjct: 481 ESILELLINSPTFSVIESHPGTLLRNSSAFSYQRQTSNRSEPSGEINIDSSGETVGSGER 540
Query: 541 CVMAMLRRRIRDEKTNVRKSALQVLVSILKHCDVSGMKEDLWILQDQCRDPAVSVRKQAL 600
CVMAMLRRRIRDEKTNVRKSALQVLVSILKHCDVSGMKEDLWILQDQCRDPAVSVRKQAL
Sbjct: 541 CVMAMLRRRIRDEKTNVRKSALQVLVSILKHCDVSGMKEDLWILQDQCRDPAVSVRKQAL 600
Query: 601 QSLTELLMAQPRCVQIQKAWLRGVVPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSG 660
QSLTELLMAQPRCVQIQKAWLRGVVPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSG
Sbjct: 601 QSLTELLMAQPRCVQIQKAWLRGVVPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSG 660
Query: 661 DDSQVLAWALLTLLTTESQELSRYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWM 720
DDSQVLAWALLTLLTTESQELSRYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWM
Sbjct: 661 DDSQVLAWALLTLLTTESQELSRYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWM 720
Query: 721 LLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDA 780
LLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDA
Sbjct: 721 LLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDA 780
Query: 781 VKCKLNGFQWSLEVISSAVDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVL 840
VKCKLNGFQWSLEVISSAVDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVL
Sbjct: 781 VKCKLNGFQWSLEVISSAVDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVL 840
Query: 841 KENGTGNMDEDLLVKYIFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSE 900
KENGTGNMDEDLLVKYIFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSE
Sbjct: 841 KENGTGNMDEDLLVKYIFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSE 900
Query: 901 APASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNN 960
APASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNN
Sbjct: 901 APASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNN 960
Query: 961 VIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFR 1020
VIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFR
Sbjct: 961 VIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFR 1020
Query: 1021 FVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSER 1080
FVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSER
Sbjct: 1021 FVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSER 1080
Query: 1081 EKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASE 1140
EKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASE
Sbjct: 1081 EKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASE 1140
Query: 1141 LLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIEN 1200
LLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIEN
Sbjct: 1141 LLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIEN 1200
Query: 1201 IIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQ 1260
IIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQ
Sbjct: 1201 IIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQ 1260
Query: 1261 EQLVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA 1320
EQLVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA
Sbjct: 1261 EQLVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA 1320
Query: 1321 SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTL 1380
SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTL
Sbjct: 1321 SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTL 1380
Query: 1381 NSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSS 1440
NSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSS
Sbjct: 1381 NSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSS 1440
Query: 1441 AKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPLKTAN 1498
AKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPLKTAN
Sbjct: 1441 AKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPLKTAN 1498
>gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens]
Length = 1401
Score = 58.2 bits (139), Expect = 6e-08
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 919 IRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDK 978
+ A A + LGK C+ + L LE VR+N+++ DL IR+ +VD
Sbjct: 1033 LSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDP 1092
Query: 979 YIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFRFVSTLIDSHPDIASFGEF 1038
+ P++ L+D +RK +++T+L+ ++ VK KG + LID P IA+ +
Sbjct: 1093 WTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQV-SEMAVLLIDPEPQIAALAKN 1151
Query: 1039 CLAHLLLKRNPV 1050
L K N +
Sbjct: 1152 FFNELSHKGNAI 1163
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 44.7 bits (104), Expect = 7e-04
Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 33/304 (10%)
Query: 1162 KPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIENIIPIIISLKTVLEKNKI---- 1217
K + ++ MEE+ + Q++Q + + V + +EN+ +I + V+E N++
Sbjct: 359 KQEMEVKMEEETEVRESEKQQDSQPEEVMDVLE--MVENVKHVIAD-QEVMETNRVESVE 415
Query: 1218 PALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQEQLVQEQELAKHADVAG 1277
P+ E L M+ + K+ ++ + DM+K E+ +++ + VA
Sbjct: 416 PSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQPEPVA- 474
Query: 1278 TAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRASAGHVAVSSPTPETGPL 1337
+ P +Q L L++ P Q P P +AV PTP+
Sbjct: 475 -----QPQPQSQPQLQLQSQSQPVLQSQPPSQPEDLS----------LAVLQPTPQVTQE 519
Query: 1338 Q-RLLPKARPMSLSTIAILN-------SVKKAVESKSRHRSRSLGVLPFTLNSGSPEKTC 1389
Q LLP+ + + ++ + +V +SK++ RSRS G + +
Sbjct: 520 QGHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSS 579
Query: 1390 SQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSSAKEKIEGRS 1449
S SS S S+G + + S+ S S + S + T SS++ + R
Sbjct: 580 SSSSSSSSTSSSSGSSS--SSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRG 637
Query: 1450 QGND 1453
+G++
Sbjct: 638 RGHN 641
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 38.5 bits (88), Expect = 0.049
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 1297 VPVPAGQENPAMSPAVSQPCTPRASAGHVAVSSPTP-ETGPL-------QRLLPKARPMS 1348
VP P G+ +PA PA +QP P A+ +V P P + P+ R+ P +P
Sbjct: 280 VPAPGGRPSPA-PPAAAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQG 336
Query: 1349 LSTIAILNSVKKAVESKSRHRSRSLGVLPFTL 1380
L + IL + ++++ HR + L LP +L
Sbjct: 337 LDPVEILQEREYRLQARIAHRIQELENLPGSL 368
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 38.5 bits (88), Expect = 0.049
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 1297 VPVPAGQENPAMSPAVSQPCTPRASAGHVAVSSPTP-ETGPL-------QRLLPKARPMS 1348
VP P G+ +PA PA +QP P A+ +V P P + P+ R+ P +P
Sbjct: 280 VPAPGGRPSPA-PPAAAQP--PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQG 336
Query: 1349 LSTIAILNSVKKAVESKSRHRSRSLGVLPFTL 1380
L + IL + ++++ HR + L LP +L
Sbjct: 337 LDPVEILQEREYRLQARIAHRIQELENLPGSL 368
>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
sapiens]
Length = 611
Score = 37.7 bits (86), Expect = 0.084
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 1300 PAGQENP-AMSPAVSQPCTPRASAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSV 1358
PAG +P A +PA +P P +G A SP P + ++ P
Sbjct: 44 PAGGGDPEAPAPAAERPPVPGPGSGPAAALSPAAGKVPQASAMKRSDPH----------- 92
Query: 1359 KKAVESKSRHRSRSLGVL-PFTLNSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPE 1417
RHR ++ P + +P Q+ +QE N + +R++S
Sbjct: 93 ----HQHQRHRDGGEALVSPDGTVTEAPRTVKKQIQFADQKQEFNKRPTKIGRRSLSRSI 148
Query: 1418 KSISDVTFGAGVSYIGTPRTPSSAKEKIEGRSQGNDILCL 1457
S ++ + SY + +S ++K + S+G+ C+
Sbjct: 149 SQSSTDSYSSAASYTDSSDDETSPRDKQQKNSKGSSDFCV 188
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 37.0 bits (84), Expect = 0.14
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 1124 LACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQE 1183
++C +D + LD ++L E L K ++L+++ ++++++ + NV Q
Sbjct: 154 ISCASDQVEKYKLDIAQLE----ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQL 209
Query: 1184 AQKKLISQVQK-RNFIENIIPIIISLKT--VLEKNKIPALRELMHYLREVMQDYRDELKD 1240
+K+ V + R EN+ + +LK +LE+ + RE +Q ++
Sbjct: 210 LEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQE-----------REKLQQKELQIDS 258
Query: 1241 FFAVDKQLASELEYDMKKYQEQLVQEQEL 1269
+K+L+S L + +QE++V+E+ L
Sbjct: 259 LLQQEKELSSSLHQKLCSFQEEMVKEKNL 287
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 37.0 bits (84), Expect = 0.14
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 1124 LACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQE 1183
++C +D + LD ++L E L K ++L+++ ++++++ + NV Q
Sbjct: 241 ISCASDQVEKYKLDIAQLE----ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQL 296
Query: 1184 AQKKLISQVQK-RNFIENIIPIIISLKT--VLEKNKIPALRELMHYLREVMQDYRDELKD 1240
+K+ V + R EN+ + +LK +LE+ + RE +Q ++
Sbjct: 297 LEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQE-----------REKLQQKELQIDS 345
Query: 1241 FFAVDKQLASELEYDMKKYQEQLVQEQEL 1269
+K+L+S L + +QE++V+E+ L
Sbjct: 346 LLQQEKELSSSLHQKLCSFQEEMVKEKNL 374
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 37.0 bits (84), Expect = 0.14
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 1124 LACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQE 1183
++C +D + LD ++L E L K ++L+++ ++++++ + NV Q
Sbjct: 225 ISCASDQVEKYKLDIAQLE----ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQL 280
Query: 1184 AQKKLISQVQK-RNFIENIIPIIISLKT--VLEKNKIPALRELMHYLREVMQDYRDELKD 1240
+K+ V + R EN+ + +LK +LE+ + RE +Q ++
Sbjct: 281 LEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQE-----------REKLQQKELQIDS 329
Query: 1241 FFAVDKQLASELEYDMKKYQEQLVQEQEL 1269
+K+L+S L + +QE++V+E+ L
Sbjct: 330 LLQQEKELSSSLHQKLCSFQEEMVKEKNL 358
>gi|217416394 hyaluronan-mediated motility receptor isoform b [Homo
sapiens]
Length = 724
Score = 37.0 bits (84), Expect = 0.14
Identities = 33/149 (22%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 1124 LACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQE 1183
++C +D + LD ++L E L K ++L+++ ++++++ + NV Q
Sbjct: 240 ISCASDQVEKYKLDIAQLE----ENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQL 295
Query: 1184 AQKKLISQVQK-RNFIENIIPIIISLKT--VLEKNKIPALRELMHYLREVMQDYRDELKD 1240
+K+ V + R EN+ + +LK +LE+ + RE +Q ++
Sbjct: 296 LEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQE-----------REKLQQKELQIDS 344
Query: 1241 FFAVDKQLASELEYDMKKYQEQLVQEQEL 1269
+K+L+S L + +QE++V+E+ L
Sbjct: 345 LLQQEKELSSSLHQKLCSFQEEMVKEKNL 373
>gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [Homo
sapiens]
Length = 610
Score = 36.6 bits (83), Expect = 0.19
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 16/159 (10%)
Query: 1300 PAGQENP-AMSPAVSQPCTPRASAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSV 1358
PAG +P A +PA +P P +G A SP P + ++ P
Sbjct: 44 PAGGGDPEAPAPAAERPPVPGPGSGPAAALSPAAGKVPQASAMKRSDPH----------- 92
Query: 1359 KKAVESKSRHRSRSLGVLPFTLNSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEK 1418
RHR ++ +T ++ +QE N + +R++S
Sbjct: 93 ----HQHQRHRDGGEALVSPDGTVTEAPRTVKKIQFADQKQEFNKRPTKIGRRSLSRSIS 148
Query: 1419 SISDVTFGAGVSYIGTPRTPSSAKEKIEGRSQGNDILCL 1457
S ++ + SY + +S ++K + S+G+ C+
Sbjct: 149 QSSTDSYSSAASYTDSSDDETSPRDKQQKNSKGSSDFCV 187
>gi|223029422 SKI-like isoform 3 [Homo sapiens]
Length = 664
Score = 35.8 bits (81), Expect = 0.32
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 1154 IKLLAMRSKP--DKDLLMEEDDMALANVVMQ---EAQKKLISQVQKRNFIENIIPIIISL 1208
I L+A S P KD++ E+D + VM+ + Q+KL +QK+ ++ + ++ S
Sbjct: 486 IGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLKQQEKLNLILQKKQQLQMEVKMLSSS 545
Query: 1209 KTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKK 1258
K++ E + + L L + ++ +++F+ K L +LE MK+
Sbjct: 546 KSMKELTE--EQQNLQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQ 593
>gi|223029420 SKI-like isoform 2 [Homo sapiens]
Length = 638
Score = 35.8 bits (81), Expect = 0.32
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 1154 IKLLAMRSKP--DKDLLMEEDDMALANVVMQ---EAQKKLISQVQKRNFIENIIPIIISL 1208
I L+A S P KD++ E+D + VM+ + Q+KL +QK+ ++ + ++ S
Sbjct: 460 IGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLKQQEKLNLILQKKQQLQMEVKMLSSS 519
Query: 1209 KTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKK 1258
K++ E + + L L + ++ +++F+ K L +LE MK+
Sbjct: 520 KSMKELTE--EQQNLQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQ 567
>gi|223029418 SKI-like isoform 1 [Homo sapiens]
Length = 684
Score = 35.8 bits (81), Expect = 0.32
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 1154 IKLLAMRSKP--DKDLLMEEDDMALANVVMQ---EAQKKLISQVQKRNFIENIIPIIISL 1208
I L+A S P KD++ E+D + VM+ + Q+KL +QK+ ++ + ++ S
Sbjct: 506 IGLVAAASSPLLVKDVICEDDKGKIMEEVMRTYLKQQEKLNLILQKKQQLQMEVKMLSSS 565
Query: 1209 KTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKK 1258
K++ E + + L L + ++ +++F+ K L +LE MK+
Sbjct: 566 KSMKELTE--EQQNLQKELESLQNEHAQRMEEFYVEQKDLEKKLEQIMKQ 613
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 35.8 bits (81), Expect = 0.32
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 49/244 (20%)
Query: 1282 AEVAPVAQVALCLETVP-VPAGQENPAMSPAVSQPCTPRASAGHVAVSSPTPETGPLQRL 1340
A P + + +C + P A +P SP QP + S +P P
Sbjct: 1250 ASTPPPSPLPICSQPQPSTEATVPSPTQSPIRFQPAPAKTSTP----LAPLPVQSQSDTK 1305
Query: 1341 LPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTLNSG------SPEKTCSQVSS 1394
P+++ + + + KS RSLG+ P + G +P + S
Sbjct: 1306 DRLGSPLAVDEALRRSDLVEEFWMKSAEIRRSLGLTPVDRSKGPEPSFPTPAFRPVSLKS 1365
Query: 1395 YSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPS-----SAKEK----- 1444
YS+E+ E H+ K +S P++ G +S + TPR+PS SA+E+
Sbjct: 1366 YSVEKSPQDEGLHLLK-PLSIPKRLGLPKPEGEPLS-LPTPRSPSDRELRSAQEERRELS 1423
Query: 1445 ------IEGRSQG-----------NDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRR 1487
+ G S +D L+ P PPP P + PA RR
Sbjct: 1424 SSSGLGLHGSSSNMKTLGSQSFNTSDSAMLTPPSSPPPPPPP---------GEEPATLRR 1474
Query: 1488 SLRK 1491
LR+
Sbjct: 1475 KLRE 1478
>gi|22027651 adaptor-related protein complex 1 beta 1 subunit isoform
a [Homo sapiens]
Length = 949
Score = 35.8 bits (81), Expect = 0.32
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 53/320 (16%)
Query: 936 DLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIR 995
D+A ++ V++ CED + V CIR + + + CLKD DP++R
Sbjct: 82 DMAIMAVNTFVKD---CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVR 138
Query: 996 KQTLILLTNL--LQEEFVKWKGSLFFRFVSTLI-DSHPDIASFGEFCLAHLLLKRNPVMF 1052
K + + L + + V+ +G F + LI DS+P + + L+ +
Sbjct: 139 KTAAVCVAKLHDINAQLVEDQG--FLDTLKDLISDSNPMVVANAVAALSEIA-------- 188
Query: 1053 FQHFIECIFHFNNYEKHEKYNKF---PQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTD 1109
E H N PQS +L + + + ++ I L +
Sbjct: 189 --------------ESHPSSNLLDLNPQS--INKLLTALNECTEWGQIFILDCLANYMPK 232
Query: 1110 EQRFNITSKICLSILACFADGILPLDLDASELLSDTFEVLSSKEI----KLLAMRSKPDK 1165
+ R IC + + + L A ++L E+L SK++ LL + P
Sbjct: 233 DDR--EAQSICERVTPRLSHANSAVVLSAVKVLMKFMEML-SKDLDYYGTLLKKLAPPLV 289
Query: 1166 DLLMEEDDM---ALANV-VMQEAQKKLISQVQKRNFIENIIPIIISL-------KTVLEK 1214
LL E ++ AL N+ ++ + + +++ K F++ PI + L + +
Sbjct: 290 TLLSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 349
Query: 1215 NKIPALRELMHYLREVMQDY 1234
N L EL Y EV D+
Sbjct: 350 NIAQVLAELKEYATEVDVDF 369
>gi|22027653 adaptor-related protein complex 1 beta 1 subunit isoform
b [Homo sapiens]
Length = 942
Score = 35.8 bits (81), Expect = 0.32
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 53/320 (16%)
Query: 936 DLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIR 995
D+A ++ V++ CED + V CIR + + + CLKD DP++R
Sbjct: 82 DMAIMAVNTFVKD---CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVR 138
Query: 996 KQTLILLTNL--LQEEFVKWKGSLFFRFVSTLI-DSHPDIASFGEFCLAHLLLKRNPVMF 1052
K + + L + + V+ +G F + LI DS+P + + L+ +
Sbjct: 139 KTAAVCVAKLHDINAQLVEDQG--FLDTLKDLISDSNPMVVANAVAALSEIA-------- 188
Query: 1053 FQHFIECIFHFNNYEKHEKYNKF---PQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTD 1109
E H N PQS +L + + + ++ I L +
Sbjct: 189 --------------ESHPSSNLLDLNPQS--INKLLTALNECTEWGQIFILDCLANYMPK 232
Query: 1110 EQRFNITSKICLSILACFADGILPLDLDASELLSDTFEVLSSKEI----KLLAMRSKPDK 1165
+ R IC + + + L A ++L E+L SK++ LL + P
Sbjct: 233 DDR--EAQSICERVTPRLSHANSAVVLSAVKVLMKFMEML-SKDLDYYGTLLKKLAPPLV 289
Query: 1166 DLLMEEDDM---ALANV-VMQEAQKKLISQVQKRNFIENIIPIIISL-------KTVLEK 1214
LL E ++ AL N+ ++ + + +++ K F++ PI + L + +
Sbjct: 290 TLLSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 349
Query: 1215 NKIPALRELMHYLREVMQDY 1234
N L EL Y EV D+
Sbjct: 350 NIAQVLAELKEYATEVDVDF 369
>gi|7662070 Ral GEF with PH domain and SH3 binding motif 1 [Homo
sapiens]
Length = 557
Score = 35.4 bits (80), Expect = 0.42
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 1184 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA 1243
A ++ Q+ N + NI+ II L+ + + L + YL+ V Y +EL+ F
Sbjct: 219 ASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVR--YIEELQKFVE 276
Query: 1244 VDKQLASELEYDMKKYQEQLVQEQELAKHADVAGTAGGAEVA--------PVAQVALCLE 1295
D S L + +LV +E D+AG + G+ A P VA L
Sbjct: 277 DDNYKLS-LRIEPGSSSPRLVSSKE-----DLAGPSAGSGSARFSRRPTCPDTSVAGSLP 330
Query: 1296 TVPVPAGQENPAM 1308
T PVP +++ ++
Sbjct: 331 TPPVPRHRKSHSL 343
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.54
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 1258 KYQEQLVQEQELAKHADVAGTAGGAEVAPVAQVAL--------------------CLETV 1297
K +E+ QE+E + AG +GG P+A + L L +V
Sbjct: 529 KEREKRRQERERKERG--AGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPALTSV 586
Query: 1298 PVPAGQENPAMSPA---------VSQPCTPR-ASAGHVAVSSPTP----------ETGPL 1337
P PA P +P V+QP P+ SAG + P P TGP
Sbjct: 587 PAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGP- 645
Query: 1338 QRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLP-FTLNSGSPEKTCSQVSSYS 1396
+P P ++T L + + V S + GVLP F P+ + SS S
Sbjct: 646 PGPIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDAGGAPQSSMS 705
Query: 1397 LEQESNGEIEHVTKRAISTPEKSI-SDVTFGAGVSY 1431
+ N + ++K + P + S G+G Y
Sbjct: 706 ESPDVNLVTQQLSKSQVEDPLPPVFSGTPKGSGAGY 741
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.54
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 1258 KYQEQLVQEQELAKHADVAGTAGGAEVAPVAQVAL--------------------CLETV 1297
K +E+ QE+E + AG +GG P+A + L L +V
Sbjct: 529 KEREKRRQERERKERG--AGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPALTSV 586
Query: 1298 PVPAGQENPAMSPA---------VSQPCTPR-ASAGHVAVSSPTP----------ETGPL 1337
P PA P +P V+QP P+ SAG + P P TGP
Sbjct: 587 PAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGP- 645
Query: 1338 QRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLP-FTLNSGSPEKTCSQVSSYS 1396
+P P ++T L + + V S + GVLP F P+ + SS S
Sbjct: 646 PGPIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDAGGAPQSSMS 705
Query: 1397 LEQESNGEIEHVTKRAISTPEKSI-SDVTFGAGVSY 1431
+ N + ++K + P + S G+G Y
Sbjct: 706 ESPDVNLVTQQLSKSQVEDPLPPVFSGTPKGSGAGY 741
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.54
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 1258 KYQEQLVQEQELAKHADVAGTAGGAEVAPVAQVAL--------------------CLETV 1297
K +E+ QE+E + AG +GG P+A + L L +V
Sbjct: 529 KEREKRRQERERKERG--AGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPALTSV 586
Query: 1298 PVPAGQENPAMSPA---------VSQPCTPR-ASAGHVAVSSPTP----------ETGPL 1337
P PA P +P V+QP P+ SAG + P P TGP
Sbjct: 587 PAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGP- 645
Query: 1338 QRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLP-FTLNSGSPEKTCSQVSSYS 1396
+P P ++T L + + V S + GVLP F P+ + SS S
Sbjct: 646 PGPIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDAGGAPQSSMS 705
Query: 1397 LEQESNGEIEHVTKRAISTPEKSI-SDVTFGAGVSY 1431
+ N + ++K + P + S G+G Y
Sbjct: 706 ESPDVNLVTQQLSKSQVEDPLPPVFSGTPKGSGAGY 741
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 35.0 bits (79), Expect = 0.54
Identities = 53/216 (24%), Positives = 80/216 (37%), Gaps = 45/216 (20%)
Query: 1258 KYQEQLVQEQELAKHADVAGTAGGAEVAPVAQVAL--------------------CLETV 1297
K +E+ QE+E + AG +GG P+A + L L +V
Sbjct: 390 KEREKRRQERERKERG--AGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPALTSV 447
Query: 1298 PVPAGQENPAMSPA---------VSQPCTPR-ASAGHVAVSSPTP----------ETGPL 1337
P PA P +P V+QP P+ SAG + P P TGP
Sbjct: 448 PAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGP- 506
Query: 1338 QRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLP-FTLNSGSPEKTCSQVSSYS 1396
+P P ++T L + + V S + GVLP F P+ + SS S
Sbjct: 507 PGPIPVPAPPQIATSTSLLAAQSLVPPPGLPGSSTPGVLPYFPPGLPPPDAGGAPQSSMS 566
Query: 1397 LEQESNGEIEHVTKRAISTPEKSI-SDVTFGAGVSY 1431
+ N + ++K + P + S G+G Y
Sbjct: 567 ESPDVNLVTQQLSKSQVEDPLPPVFSGTPKGSGAGY 602
>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
Length = 895
Score = 34.7 bits (78), Expect = 0.71
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 1115 ITSKICLSILACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDK----DLLME 1170
I + S+L+ +D + D L +T + +++ KL+ R P+ + +E
Sbjct: 345 IDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLE 404
Query: 1171 EDDMALANVVMQEAQKKLISQVQKRNFIENIIPII-ISLKTVLEKNKIPALRELMHYLRE 1229
E+ L + Q QK LI+ V+K+ E++ I+ L +L++N+I L L
Sbjct: 405 EEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSR 464
Query: 1230 VMQDYRDELKDFFAVDKQLASELEYDMKKYQEQLVQE 1266
V + L+ + K S + + +K + +VQE
Sbjct: 465 VRGGVQVLLQQWIEYIKAFGSTIVINPEK-DKTMVQE 500
>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
Length = 913
Score = 34.7 bits (78), Expect = 0.71
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 1115 ITSKICLSILACFADGILPLDLDASELLSDTFEVLSSKEIKLLAMRSKPDK----DLLME 1170
I + S+L+ +D + D L +T + +++ KL+ R P+ + +E
Sbjct: 363 IDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLE 422
Query: 1171 EDDMALANVVMQEAQKKLISQVQKRNFIENIIPII-ISLKTVLEKNKIPALRELMHYLRE 1229
E+ L + Q QK LI+ V+K+ E++ I+ L +L++N+I L L
Sbjct: 423 EEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSR 482
Query: 1230 VMQDYRDELKDFFAVDKQLASELEYDMKKYQEQLVQE 1266
V + L+ + K S + + +K + +VQE
Sbjct: 483 VRGGVQVLLQQWIEYIKAFGSTIVINPEK-DKTMVQE 518
>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 259
Score = 34.7 bits (78), Expect = 0.71
Identities = 68/251 (27%), Positives = 94/251 (37%), Gaps = 40/251 (15%)
Query: 1277 GTAGGAEVAPVA------QVALCLETVPVPAGQENPAMSP-AVSQPCT--PRASAGHVAV 1327
GTAG AEVA QV L T +PA PA+ P VS+P + P S
Sbjct: 5 GTAGPAEVAMQEAEAGPPQVGLSRPTCSLPASSPGPALPPGCVSRPDSGLPTTSLDSAPA 64
Query: 1328 SSPTPETGPLQRLLPKA---RPMSLSTIAILNS---VKKAVESKSRHRS-----RSLGVL 1376
P GP LP+A RP S T+A S ++ +++ + RS SLG+L
Sbjct: 65 QLPVALVGP---QLPEAKFPRPRSGLTVASPGSAPALRWHLQAPNGLRSVGSSRPSLGLL 121
Query: 1377 PFTLNSGSPEKTCSQVSSYSLEQESNGEIE---------HVTKRAISTPEKSISDVTFGA 1427
+ PE S+ S L S G + + P +S + GA
Sbjct: 122 AASAGPNRPEVGLSR-PSLGLPAASAGPSHPQIGLELGLEEQQVGLPGPNSVLSAASPGA 180
Query: 1428 GVSYIGTPRTPSSAKEKIEGRSQGNDILCLSLPDKP-----PPQPQQWNVRSPARNKDTP 1482
+ + R SS +Q + L + P P Q Q N+ S + P
Sbjct: 181 KLPRVSLSRPSSSCLPVASFXAQPSSWLSAAFPGPAFDFWRPLQAQ--NLTSSGPLQARP 238
Query: 1483 ACSRRSLRKTP 1493
SRR R P
Sbjct: 239 PASRRPARARP 249
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 34.7 bits (78), Expect = 0.71
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 157 LNRKRKKEQPKSSQANPGRH-RKRGKPPRREDIEMDEIIEEQEDEN 201
L+ R+ E K+ + PG+ ++RG+PP+R+ ++ + ++ E+++EN
Sbjct: 178 LSLSRESEGQKNVSSIPGKTGKRRGRPPKRKKLQEEILLSEKQEEN 223
>gi|71773106 adaptor-related protein complex 2, beta 1 subunit isoform
a [Homo sapiens]
Length = 951
Score = 34.7 bits (78), Expect = 0.71
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 936 DLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIR 995
D+A ++ + V++ CED + V CIR + + + CLKD DP++R
Sbjct: 82 DMAIMAVNSFVKD---CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVR 138
Query: 996 KQTLILLTNL--LQEEFVKWKGSLFFRFVSTLI-DSHPDIAS 1034
K + + L + + V+ +G F + LI DS+P + +
Sbjct: 139 KTAAVCVAKLHDINAQMVEDQG--FLDSLRDLIADSNPMVVA 178
>gi|4557469 adaptor-related protein complex 2, beta 1 subunit isoform
b [Homo sapiens]
Length = 937
Score = 34.7 bits (78), Expect = 0.71
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 936 DLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIR 995
D+A ++ + V++ CED + V CIR + + + CLKD DP++R
Sbjct: 82 DMAIMAVNSFVKD---CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVR 138
Query: 996 KQTLILLTNL--LQEEFVKWKGSLFFRFVSTLI-DSHPDIAS 1034
K + + L + + V+ +G F + LI DS+P + +
Sbjct: 139 KTAAVCVAKLHDINAQMVEDQG--FLDSLRDLIADSNPMVVA 178
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 34.3 bits (77), Expect = 0.93
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 1298 PVPAGQENPAMSPAVSQPCTPRASAGHVAVSSPTPETGPLQRLLP 1342
P PA Q P SPA + TP S + +PTP P P
Sbjct: 10 PAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAP 54
>gi|7706497 UMP-CMP kinase 1 isoform a [Homo sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 0.93
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 361 CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL 420
CA++V+K Y +A L++ K P +Y I KY + KI +++ ++LL
Sbjct: 52 CARIVEKYGYTHLSAGELLRDERKNPDSQYGELIE---KYIKEGKI----VPVEITISLL 104
Query: 421 ELPEREVDNTLSLEHQKFLKHKFLV 445
+RE+D T++ Q K+KFL+
Sbjct: 105 ---KREMDQTMAANAQ---KNKFLI 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,212,572
Number of Sequences: 37866
Number of extensions: 2651459
Number of successful extensions: 11630
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 11491
Number of HSP's gapped (non-prelim): 249
length of query: 1498
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1383
effective length of database: 13,892,928
effective search space: 19213919424
effective search space used: 19213919424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.