Guide to the Human Genome
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Name: CUL4B Sequence: fasta or formatted (895aa) NCBI GI: 121114302
Description:

cullin 4B isoform 2

Referenced in:

Cullins and SCF Complexes

Other entries for this name:
alt prot [913aa] cullin 4B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         54           5
 C cysteine            1.1         10           1
 D aspartate           5.4         48           2
 E glutamate           8.0         72           3
 F phenylalanine       4.6         41           1
 G glycine             3.6         32           2
 H histidine           1.9         17           2
 I isoleucine          6.5         58           2
 K lysine              9.3         83           2
 L leucine            10.5         94           3
 M methionine          2.8         25           1
 N asparagine          4.6         41           2
 P proline             3.1         28           2
 Q glutamine           5.9         53           4
 R arginine            4.5         40           2
 S serine              9.5         85           9
 T threonine           4.7         42           2
 V valine              4.7         42           1
 W tryptophan          0.7          6           1
 Y tyrosine            2.7         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cullin 4B isoform 2 
CUL4B                 0.995   cullin 4B isoform 1 
CUL4A                 0.706   cullin 4A isoform 1 
CUL4A                 0.645   cullin 4A isoform 2 
CUL3                  0.277   cullin 3 
CUL1                  0.182   cullin 1 
CUL2                  0.164   cullin 2 
CUL5                  0.123   Vasopressin-activated calcium-mobilizing receptor-1 ...
ANAPC2                0.022   anaphase-promoting complex subunit 2 
SRRM2                 0.016   splicing coactivator subunit SRm300 
TNRC18                0.014   trinucleotide repeat containing 18 
DSPP                  0.013   dentin sialophosphoprotein preproprotein 
CUL9                  0.013   p53-associated parkin-like cytoplasmic protein [Homo...
CHD9                  0.012   chromodomain helicase DNA binding protein 9 
MUC21                 0.011   mucin 21 
PPRC1                 0.010   peroxisome proliferator-activated receptor gamma, co...
MUC3A                 0.010   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100131251          0.010   PREDICTED: hypothetical protein 
LOC100131251          0.010   PREDICTED: hypothetical protein 
PNN                   0.010   pinin, desmosome associated protein 
MYH11                 0.009   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.009   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.009   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.009   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
ZBTB4                 0.009   zinc finger and BTB domain containing 4 
ZBTB4                 0.009   zinc finger and BTB domain containing 4 
MED1                  0.009   mediator complex subunit 1 
HEG1                  0.009   HEG homolog 1 
ZCCHC10               0.009   zinc finger, CCHC domain containing 10 
MLLT1                 0.009   myeloid/lymphoid or mixed-lineage leukemia (trithora...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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