Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4506205
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo ... 437 e-123
gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo... 412 e-116
gi|23110925 proteasome beta 6 subunit [Homo sapiens] 265 2e-71
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens] 98 6e-21
gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Hom... 97 8e-21
gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo... 97 8e-21
gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens] 92 3e-19
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens] 90 1e-18
gi|153791216 proteasome beta 11 subunit [Homo sapiens] 86 3e-17
gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens] 65 6e-11
gi|22538465 proteasome beta 3 subunit [Homo sapiens] 64 1e-10
gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens] 62 3e-10
gi|4506193 proteasome beta 1 subunit [Homo sapiens] 47 2e-05
gi|4506195 proteasome beta 2 subunit [Homo sapiens] 44 1e-04
gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens] 41 0.001
gi|23110942 proteasome alpha 5 subunit [Homo sapiens] 41 0.001
gi|22538467 proteasome beta 4 subunit [Homo sapiens] 40 0.002
gi|4506189 proteasome alpha 7 subunit [Homo sapiens] 38 0.006
gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens] 35 0.038
gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens] 35 0.038
gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens] 34 0.085
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 31 0.94
gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens] 29 2.7
gi|145580600 schlafen family member 5 [Homo sapiens] 28 6.1
gi|23110944 proteasome alpha 6 subunit [Homo sapiens] 28 8.0
gi|239753084 PREDICTED: Beclin-1-like protein 1 [Homo sapiens] 28 8.0
gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo ... 28 8.0
gi|88952907 PREDICTED: Beclin-1-like protein 1 [Homo sapiens] 28 8.0
gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo ... 28 8.0
gi|88943925 PREDICTED: Beclin-1-like protein 1 [Homo sapiens] 28 8.0
>gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
sapiens]
Length = 219
Score = 437 bits (1123), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER 60
MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER
Sbjct: 1 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHER 60
Query: 61 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120
IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV
Sbjct: 61 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120
Query: 121 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA 180
AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA
Sbjct: 121 AGWDQREGGQVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA 180
Query: 181 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE
Sbjct: 181 LAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219
>gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo
sapiens]
Length = 209
Score = 412 bits (1060), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 13 RAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADA 72
RAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADA
Sbjct: 3 RAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADA 62
Query: 73 QAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVY 132
QAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVY
Sbjct: 63 QAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVY 122
Query: 133 GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGV 192
GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGV
Sbjct: 123 GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGV 182
Query: 193 IYLVTITAAGVDHRVILGNELPKFYDE 219
IYLVTITAAGVDHRVILGNELPKFYDE
Sbjct: 183 IYLVTITAAGVDHRVILGNELPKFYDE 209
>gi|23110925 proteasome beta 6 subunit [Homo sapiens]
Length = 239
Score = 265 bits (677), Expect = 2e-71
Identities = 126/202 (62%), Positives = 160/202 (79%), Gaps = 1/202 (0%)
Query: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
EV TGTTIMAV+FDGGVV+G+DSR + G + NRV DKL+P+H+RI+C SGSAAD QAV
Sbjct: 30 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAV 89
Query: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT- 134
AD YQL H IEL EPPLV AA++ + + Y+YREDL A +++AGWD +EGGQVY
Sbjct: 90 ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVP 149
Query: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIY 194
+GGM+ RQ FAIGGSGS++IYGYVDA Y+ GM+ EEC +FT +A+ALAM RDGSSGGVI
Sbjct: 150 MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 209
Query: 195 LVTITAAGVDHRVILGNELPKF 216
L I +GV+ +V+LG+++PKF
Sbjct: 210 LAAIAESGVERQVLLGDQIPKF 231
>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
Length = 273
Score = 97.8 bits (242), Expect = 6e-21
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 2/185 (1%)
Query: 19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADM 78
TGTTI + F GV++G+D+R + V ++ +K+ + +IYC +G AADA+ M
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 79 AAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-LGG 137
A ++ELH + P V ++R ++Y+ + A L+V G D G Q+YG G
Sbjct: 98 VASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHG 156
Query: 138 MLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVT 197
+R PF GSG ++ ++P M+ E + +A+ + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACV 216
Query: 198 ITAAG 202
IT G
Sbjct: 217 ITKTG 221
>gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Homo
sapiens]
Length = 276
Score = 97.4 bits (241), Expect = 8e-21
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 1/179 (0%)
Query: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
E+ GTT +A +F GV+ DSR SAG + +K+ ++ + +SG AAD Q
Sbjct: 68 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGT 134
+ A + L+ + E V AA+ ++ N+ +YR LS M+ GWD++ G Y
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193
G GSG+T+ YG +D+ Y+P +SPEE AIA A RD SGGV+
Sbjct: 188 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 246
>gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo
sapiens]
Length = 272
Score = 97.4 bits (241), Expect = 8e-21
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 1/179 (0%)
Query: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
E+ GTT +A +F GV+ DSR SAG + +K+ ++ + +SG AAD Q
Sbjct: 64 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 123
Query: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGT 134
+ A + L+ + E V AA+ ++ N+ +YR LS M+ GWD++ G Y
Sbjct: 124 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 183
Query: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193
G GSG+T+ YG +D+ Y+P +SPEE AIA A RD SGGV+
Sbjct: 184 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 242
>gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]
Length = 277
Score = 92.0 bits (227), Expect = 3e-19
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 2/187 (1%)
Query: 19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADM 78
TGTTI V + G+V+G+D+R + G V ++ K+ + IYC +G+AAD +
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 79 AAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL-GG 137
+ LELH + P V+ A +++ + ++Y+ + A L++ G D G +Y G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDV-TGPHLYSIYPHG 160
Query: 138 MLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVT 197
+ P+ GSGS + ++P M EE + ++AIA + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 198 ITAAGVD 204
I+ +D
Sbjct: 221 ISKNKLD 227
>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
Length = 263
Score = 90.1 bits (222), Expect = 1e-18
Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Query: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
E+ GTT +A +F GV++ +DSR +AG + ++ K+ ++ + ++G AAD
Sbjct: 55 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
Query: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY-G 133
+ A Q ++ + +E V AA+ ++ N+ Y+Y+ LS M+ GWD+R G Y
Sbjct: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVD 174
Query: 134 TLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVI 193
+ G ++ F++ GSGS + YG +D Y + E+ AI A RD SGG +
Sbjct: 175 SEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233
Query: 194 YLVTITAAG 202
L + G
Sbjct: 234 NLYHVREDG 242
>gi|153791216 proteasome beta 11 subunit [Homo sapiens]
Length = 300
Score = 85.5 bits (210), Expect = 3e-17
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 24/221 (10%)
Query: 7 PTGDLPRAG--------------EVHT-----GTTIMAVEFDGGVVMGSDSRVSAGEAVV 47
P+ LPRAG ++H GTT +A F GV+ +D+R S G V
Sbjct: 17 PSPHLPRAGGWAVPRGCDPQTFLQIHGPRLAHGTTTLAFRFRHGVIAAADTRSSCGSYVA 76
Query: 48 NRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNIS 107
K+ P+H+ + SG++AD + +L L + + P V +AA ++ +
Sbjct: 77 CPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMM 136
Query: 108 YKYRE-DLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGSTFIYGYVDAAYKP 164
+YR DL + GWD R G +++ G L F++ GSGS + YG +D Y+
Sbjct: 137 SQYRGLDLCVATALCGWD-RSGPELFYVYSDGTRLQGDIFSV-GSGSPYAYGVLDRGYRY 194
Query: 165 GMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDH 205
MS +E A+A A RD SGG + L + +G +H
Sbjct: 195 DMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEH 235
>gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens]
Length = 160
Score = 64.7 bits (156), Expect = 6e-11
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 65 LSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGW 123
++G AAD + A Q ++ + +E V AA+ ++ N+ Y+Y+ LS M+ GW
Sbjct: 1 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
Query: 124 DQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALA 182
D+R G Y + G ++ F++G SGS + YG +D Y + E+ AI A
Sbjct: 61 DKRGPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQA 119
Query: 183 MSRDGSSGGVIYLVTITAAG 202
RD SGG + L + G
Sbjct: 120 TYRDAYSGGAVNLYHVREDG 139
>gi|22538465 proteasome beta 3 subunit [Homo sapiens]
Length = 205
Score = 63.9 bits (154), Expect = 1e-10
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 5/181 (2%)
Query: 18 HTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVAD 77
+ G +MA++ V + +D R +V F K+ P+ +R+Y L+G A D Q VA
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 65
Query: 78 MAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGTL- 135
++L L+ ++ ++V N+ Y+ R ++AG D + +L
Sbjct: 66 RLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125
Query: 136 --GGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSG-GV 192
G + F + G+ + +YG ++ ++P M P+ + A+ A+ RD SG GV
Sbjct: 126 LIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGV 185
Query: 193 I 193
I
Sbjct: 186 I 186
>gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
Length = 203
Score = 62.4 bits (150), Expect = 3e-10
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
E+ GTT +A +F GV++ +DSR +AG + ++ K+ ++ + ++G AAD
Sbjct: 55 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
Query: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYGT 134
+ A Q ++ + +E V AA+ ++ N+ Y+Y+ LS M+ GWD+R G
Sbjct: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR------GP 168
Query: 135 LGGMLTRQPFAIG 147
+ +L +P + G
Sbjct: 169 VSEVLCLKPKSFG 181
>gi|4506193 proteasome beta 1 subunit [Homo sapiens]
Length = 241
Score = 46.6 bits (109), Expect = 2e-05
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 11/203 (5%)
Query: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76
V G TI+A+ + ++ SD+R+S G ++ R K L ++ SG D +
Sbjct: 34 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 93
Query: 77 DMAAYQLELHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVYG-T 134
+ +L+++ + A A ++ I Y R + ++ G D+ G VY
Sbjct: 94 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 153
Query: 135 LGGMLTRQPFAIGGSGSTFIYGYVD--AAYK-------PGMSPEECRRFTTDAIALAMSR 185
G R F GGS S + +D +K +S + R D A R
Sbjct: 154 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAER 213
Query: 186 DGSSGGVIYLVTITAAGVDHRVI 208
D +G + + +T G+ +
Sbjct: 214 DVYTGDALRICIVTKEGIREETV 236
>gi|4506195 proteasome beta 2 subunit [Homo sapiens]
Length = 201
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 33 VMGSDSRVSAGEAV-VNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELE 91
V+ + RV+A V + DK+ + E+I G A D A+ ++L+ +
Sbjct: 13 VLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNG 72
Query: 92 EPPLVLAAANVV-RNIS--YKYREDLSAHLMVAGWDQREGGQV-YGTLGGMLTRQPFAIG 147
AAAN RN++ + R +L++AG+D+ EG + Y L + PFA
Sbjct: 73 YELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAH 132
Query: 148 GSGSTFIYGYVDAAYKPGMSPE 169
G G+ +D Y P +S E
Sbjct: 133 GYGAFLTLSILDRYYTPTISRE 154
>gi|68303563 proteasome alpha 8 subunit isoform 2 [Homo sapiens]
Length = 250
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76
V G+T + + VV+G + + S + R K+ L + + A +G ADA+ V
Sbjct: 28 VKKGSTAVGIRGTNIVVLGVEKK-SVAKLQDERTVRKICALDDHVCMAFAGLTADARVVI 86
Query: 77 DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 131
+ A + + H + +E+P V + + KY R ++ G+D ++
Sbjct: 87 NRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRL 146
Query: 132 YGT 134
Y T
Sbjct: 147 YQT 149
>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
Length = 241
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76
+ G+T + ++ GV + + R+++ + + +K+ + I CA+SG ADA+ +
Sbjct: 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI-EKIVEIDAHIGCAMSGLIADAKTLI 89
Query: 77 DMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRED 113
D A + + H E V + V N++ ++ E+
Sbjct: 90 DKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126
>gi|22538467 proteasome beta 4 subunit [Homo sapiens]
Length = 264
Score = 39.7 bits (91), Expect = 0.002
Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 10/194 (5%)
Query: 19 TGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADM 78
TGT+++ V+F+GGVV+ +D S G R ++ ++ SG AD Q + +
Sbjct: 52 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQV 111
Query: 79 AAYQL---ELHGIELEEPPLVLAAANVVRNISYKYREDLSA---HLMVAGWDQREGGQVY 132
+ EL G P A + + Y R ++ +++ G+ E Y
Sbjct: 112 LGQMVIDEELLGDGHSYSP--RAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 169
Query: 133 GTLGGMLTRQPFAIGGSGSTFIYGYVDAAY--KPGMSPEECRRFTTDAIALAMSRDGSSG 190
+ G+ P G G+ + +P +S E R + + RD S
Sbjct: 170 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSY 229
Query: 191 GVIYLVTITAAGVD 204
+ T+T GV+
Sbjct: 230 NRFQIATVTEKGVE 243
>gi|4506189 proteasome alpha 7 subunit [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.006
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVA 76
V G+T + V VV+G + + S + R K+ L + + A +G ADA+ V
Sbjct: 26 VKKGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVI 84
Query: 77 DMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQREGGQV 131
+ A + + H + +E+P V + ++ +Y R ++ G+D ++
Sbjct: 85 NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 144
Query: 132 YGT 134
Y T
Sbjct: 145 YQT 147
>gi|156713442 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
Length = 261
Score = 35.4 bits (80), Expect = 0.038
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 18 HTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVF--DKLSPLHERIYCALSGSAADAQAV 75
H GT + + DG ++ + +++ VF +K+ L+E + C+++G +DA +
Sbjct: 30 HAGTCLGILANDGVLLAAERRNI---HKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 86
Query: 76 ADMAAYQLELHGIELEEP----PLVLAAANVVRNIS-YKYREDLSAHLMVAGWDQREGGQ 130
+ + + ++ +EP LV A ++ + + + + L+ GWD+ G Q
Sbjct: 87 TNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQ 146
Query: 131 VY-----GTLGG 137
+Y G GG
Sbjct: 147 LYQSDPSGNYGG 158
>gi|4506185 proteasome alpha 4 subunit isoform 1 [Homo sapiens]
Length = 261
Score = 35.4 bits (80), Expect = 0.038
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 18 HTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVF--DKLSPLHERIYCALSGSAADAQAV 75
H GT + + DG ++ + +++ VF +K+ L+E + C+++G +DA +
Sbjct: 30 HAGTCLGILANDGVLLAAERRNI---HKLLDEVFFSEKIYKLNEDMACSVAGITSDANVL 86
Query: 76 ADMAAYQLELHGIELEEP----PLVLAAANVVRNIS-YKYREDLSAHLMVAGWDQREGGQ 130
+ + + ++ +EP LV A ++ + + + + L+ GWD+ G Q
Sbjct: 87 TNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQ 146
Query: 131 VY-----GTLGG 137
+Y G GG
Sbjct: 147 LYQSDPSGNYGG 158
>gi|68303561 proteasome alpha 8 subunit isoform 1 [Homo sapiens]
Length = 256
Score = 34.3 bits (77), Expect = 0.085
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 17 VHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALS------GSAA 70
V G+T + + VV+G + + S + R K+ L + + A + G A
Sbjct: 28 VKKGSTAVGIRGTNIVVLGVEKK-SVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTA 86
Query: 71 DAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLMVAGWDQ 125
DA+ V + A + + H + +E+P V + + KY R ++ G+D
Sbjct: 87 DARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD 146
Query: 126 REGGQVYGT 134
++Y T
Sbjct: 147 DGISRLYQT 155
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 30.8 bits (68), Expect = 0.94
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 99 AANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLGGMLTRQPFAIG------GSGST 152
A VR + Y H +G + G TLG + + + + G GS+
Sbjct: 580 APRPVRLVRVTYVSSEGGH---SGQTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSS 636
Query: 153 FIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAG 202
+ G V P S DA+ LA SG ++Y +T T G
Sbjct: 637 TLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLG 686
>gi|68303565 proteasome alpha 8 subunit isoform 3 [Homo sapiens]
Length = 212
Score = 29.3 bits (64), Expect = 2.7
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 65 LSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKY-----REDLSAHLM 119
+ G ADA+ V + A + + H + +E+P V + + KY R +
Sbjct: 37 IRGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISAL 96
Query: 120 VAGWDQREGGQVYGT 134
+ G+D ++Y T
Sbjct: 97 IVGFDDDGISRLYQT 111
>gi|145580600 schlafen family member 5 [Homo sapiens]
Length = 891
Score = 28.1 bits (61), Expect = 6.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 30 GGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADA-QAVADMAAYQLELHGI 88
G V +G+ R + + R+ +K + + R CAL S +A + Y E HG+
Sbjct: 19 GKVTLGTQQR----QEMDPRLREKQNEIILRAVCALLNSGGGIIKAEIENKGYNYERHGV 74
Query: 89 ELEEPPL 95
L+ PP+
Sbjct: 75 GLDVPPI 81
>gi|23110944 proteasome alpha 6 subunit [Homo sapiens]
Length = 246
Score = 27.7 bits (60), Expect = 8.0
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 33 VMGSDSRVSAGEAVV-NRVFDKLSPLH-----ERIYCALSGSAADAQAVADMAAYQLE-- 84
V G D V + V +++ D + H E I C ++G AD+++ A Y+
Sbjct: 42 VRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANW 101
Query: 85 --LHGIELEEPPLVLAAANVVRNISYKYR-EDLSAHLMVAGWDQREGGQVY 132
+G E+ L A++ + + L +++ G D+ +G QVY
Sbjct: 102 KYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVY 152
>gi|239753084 PREDICTED: Beclin-1-like protein 1 [Homo sapiens]
Length = 431
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 63 CALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAG 122
C +G A ++ A AA + EL +ELEE LV +V RN + + +A A
Sbjct: 146 CLETGELATSEDEA--AALRAELRDLELEEARLVQELEDVDRNNARAAADLQAAQAEAAE 203
Query: 123 WDQRE 127
DQ+E
Sbjct: 204 LDQQE 208
>gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo
sapiens]
Length = 275
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 84 ELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLGGMLTR 141
++HG++L PP LAA RE HL G R G + GTL G+L +
Sbjct: 32 DVHGVQLPPPPPTLAAT----------REQRGLHLAQQG--VRCGPALGGTLDGVLAQ 77
>gi|88952907 PREDICTED: Beclin-1-like protein 1 [Homo sapiens]
Length = 431
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 63 CALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAG 122
C +G A ++ A AA + EL +ELEE LV +V RN + + +A A
Sbjct: 146 CLETGELATSEDEA--AALRAELRDLELEEARLVQELEDVDRNNARAAADLQAAQAEAAE 203
Query: 123 WDQRE 127
DQ+E
Sbjct: 204 LDQQE 208
>gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo
sapiens]
Length = 275
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 84 ELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLGGMLTR 141
++HG++L PP LAA RE HL G R G + GTL G+L +
Sbjct: 32 DVHGVQLPPPPPTLAAT----------REQRGLHLAQQG--VRCGPALGGTLDGVLAQ 77
>gi|88943925 PREDICTED: Beclin-1-like protein 1 [Homo sapiens]
Length = 431
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 63 CALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAG 122
C +G A ++ A AA + EL +ELEE LV +V RN + + +A A
Sbjct: 146 CLETGELATSEDEA--AALRAELRDLELEEARLVQELEDVDRNNARAAADLQAAQAEAAE 203
Query: 123 WDQRE 127
DQ+E
Sbjct: 204 LDQQE 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,121,921
Number of Sequences: 37866
Number of extensions: 335716
Number of successful extensions: 681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 31
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.