Guide to the Human Genome
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Name: PEX7 Sequence: fasta or formatted (323aa) NCBI GI: 4505731
Description:

peroxisomal biogenesis factor 7

Referenced in:

Peroxisomes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         27           2
 C cysteine            4.0         13           1
 D aspartate           6.5         21           1
 E glutamate           4.6         15           1
 F phenylalanine       4.3         14           1
 G glycine             7.4         24           2
 H histidine           3.4         11           2
 I isoleucine          4.6         15           2
 K lysine              2.8          9           1
 L leucine             9.3         30           2
 M methionine          0.6          2           1
 N asparagine          2.2          7           2
 P proline             4.6         15           1
 Q glutamine           3.7         12           1
 R arginine            5.0         16           2
 S serine              8.4         27           1
 T threonine           6.5         21           1
 V valine              6.8         22           2
 W tryptophan          3.7         12           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 7 
WDR17                 0.114   WD repeat domain 17 isoform 2 
WDR17                 0.114   WD repeat domain 17 isoform 1 
RBBP7                 0.102   retinoblastoma binding protein 7 
PRPF4                 0.098   PRP4 pre-mRNA processing factor 4 homolog 
RBBP4                 0.095   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.095   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.095   retinoblastoma binding protein 4 isoform a 
WDR69                 0.095   WD repeat domain 69 
WDR51B                0.094   WD repeat domain 51B 
WDR38                 0.094   WD repeat domain 38 
WDR24                 0.092   WD repeat domain 24 
NLE1                  0.092   Notchless gene homolog isoform b 
NLE1                  0.092   Notchless gene homolog isoform a 
WDR33                 0.092   WD repeat domain 33 isoform 1 
PAFAH1B1              0.091   platelet-activating factor acetylhydrolase, isoform I...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.089   F-box and WD repeat domain containing 11 isoform B [...
WDR5                  0.089   WD repeat domain 5 
WDR5                  0.089   WD repeat domain 5 
FBXW7                 0.086   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.086   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.086   F-box and WD repeat domain containing 7 isoform 2 [H...
BTRC                  0.086   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.086   beta-transducin repeat containing protein isoform 1 ...
CIAO1                 0.086   WD repeat domain 39 
TBL1XR1               0.086   transducin (beta)-like 1 X-linked receptor 1 
KATNB1                0.083   katanin p80 subunit B 1 
GNB5                  0.083   guanine nucleotide-binding protein, beta-5 subunit is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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