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Search of human proteins with 4505487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505487 occludin [Homo sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505487 occludin [Homo sapiens] 1072 0.0
gi|5729812 elongation factor RNA polymerase II [Homo sapiens] 84 3e-16
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 70 4e-12
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 70 5e-12
gi|21687270 MARVEL domain containing 2 isoform beta [Homo sapiens] 57 3e-08
gi|13376768 elongation factor RNA polymerase II-like 3 [Homo sap... 57 5e-08
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 48 2e-05
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 46 9e-05
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 45 2e-04
gi|149944573 keratin associated protein 19-8 [Homo sapiens] 45 2e-04
gi|31791020 keratin associated protein 20-1 [Homo sapiens] 44 3e-04
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 43 6e-04
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 43 6e-04
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 43 8e-04
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 43 8e-04
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 42 0.001
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|31791016 keratin associated protein 21-2 [Homo sapiens] 42 0.001
gi|31791010 keratin associated protein 21-1 [Homo sapiens] 42 0.001
gi|153791670 keratin 76 [Homo sapiens] 42 0.002
gi|55956899 keratin 9 [Homo sapiens] 41 0.002
gi|31791022 keratin associated protein 19-5 [Homo sapiens] 40 0.005
gi|155969697 keratin 6C [Homo sapiens] 39 0.009
gi|5031839 keratin 6A [Homo sapiens] 39 0.009
gi|119703753 keratin 6B [Homo sapiens] 39 0.009
gi|119395750 keratin 1 [Homo sapiens] 39 0.012
gi|195972866 keratin 10 [Homo sapiens] 39 0.012
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 1072 bits (2773), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTS 60
MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTS
Sbjct: 1 MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTS 60
Query: 61 PPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY 120
PPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY
Sbjct: 61 PPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY 120
Query: 121 GYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSA 180
GYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSA
Sbjct: 121 GYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSA 180
Query: 181 ILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYLYHYCVVD 240
ILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYLYHYCVVD
Sbjct: 181 ILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYLYHYCVVD 240
Query: 241 PQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKN 300
PQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKN
Sbjct: 241 PQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKN 300
Query: 301 VSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPV 360
VSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPV
Sbjct: 301 VSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPV 360
Query: 361 DDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY 420
DDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY
Sbjct: 361 DDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREY 420
Query: 421 PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADE 480
PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADE
Sbjct: 421 PPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADE 480
Query: 481 YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT 522
YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT
Sbjct: 481 YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT 522
>gi|5729812 elongation factor RNA polymerase II [Homo sapiens]
Length = 621
Score = 84.0 bits (206), Expect = 3e-16
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 311 PPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPVDDFRQPRYS- 369
PP R P+A SN + R E + P P V LPL + +P S
Sbjct: 385 PPRLEPPRAHDPLADVSNDLGHSGRDC-EHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSP 443
Query: 370 SGGNFETPSKRAPAKGRAGRSKRTEQ--DHYETDYTTGGESCD----------------- 410
S + SK+ K RA K Q D + T G D
Sbjct: 444 SRSKPKKKSKKHKDKERAAEDKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTST 503
Query: 411 ELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREE 470
D++ +Y I+S +QRQ YK +F+ EY+ L + ++ I + ++LD +L +
Sbjct: 504 SETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQG 563
Query: 471 SEEYMAA----ADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 521
SEEY EY ++K K + +Y +K+ C+ L SKL+HIK+++ +YD+++
Sbjct: 564 SEEYETTRGQILQEYRKIK--KTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQ 616
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 70.5 bits (171), Expect = 4e-12
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 375 ETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKR 434
E KR + S + D T E D++ +Y I S +QRQ YK
Sbjct: 487 EEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQRQNYKD 546
Query: 435 NFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYM----AAADEYNRLKQVKGS 490
+F+ EY++L + ++ + + +LD + S+EY EY ++KQ S
Sbjct: 547 DFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKIKQ--SS 604
Query: 491 ADYKSKKNHCKQLKSKLSHIKKMVGDYDRQK 521
+Y +K C+ L +KL+HIK+++G++D+Q+
Sbjct: 605 PNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQ 635
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 70.1 bits (170), Expect = 5e-12
Identities = 117/540 (21%), Positives = 203/540 (37%), Gaps = 130/540 (24%)
Query: 6 LESPPPYRPDEFKPNHYAPSN---DIYGGEMHV--------------------RPMLSQP 42
+E PP P +PNH +P N D YGG R +
Sbjct: 113 VECSPPASPA--RPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVR 170
Query: 43 AYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSV 102
YS E+ L + S G++RIL ++ +++ +FACV + + D + +L G S
Sbjct: 171 TYSEKVEEYNLRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEW-YNLFGYS- 228
Query: 103 GYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSV-- 160
PYG G G GS YG GY Y G P F+L +A +I ++I V +
Sbjct: 229 -QPYGMGGVGGLGSMYG-----GYYYTGPKTP-----FVLVVAGLAWITTIIILVLGMSM 277
Query: 161 -IRSEMSRTRRYYLSVIIVSAILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQF 219
R+ + + + L+ ++ L I+ A IVY+ N L+ + + A+
Sbjct: 278 YYRTILLDSNWWPLTEFGINVALFILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAV---- 333
Query: 220 YTPAATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNI 279
+C V+ + A++ F+ ++ + + +K R + +
Sbjct: 334 ----------------FCRVEGGQIAAMIFLFVTMIVYLISALVCLKLWRH-EAARRHRE 376
Query: 280 LWDKEHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPE 339
+++ I + + + + ++G + S + R +G + P
Sbjct: 377 YMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMKPELLSGHIP-----PG 431
Query: 340 SSYKSTPVPEVVQELPLTSPVDDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYE 399
K +P+ V + P+ DD R+ R K QD +
Sbjct: 432 HIPKPIVMPDYVAKYPVIQ-TDDERE-----------------------RYKAVFQDQFS 467
Query: 400 TDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSR 459
EY ++++ Q L R FD ELD + +SR
Sbjct: 468 -------------------EYKELSAEVQAVL--RKFD-----------ELDAV---MSR 492
Query: 460 LDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 519
L + R+E E +E+ K+ K + KK C LK+KLSHIK+ + +YD+
Sbjct: 493 LPHH-SESRQEHERISRIHEEF---KKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDK 548
>gi|21687270 MARVEL domain containing 2 isoform beta [Homo sapiens]
Length = 457
Score = 57.4 bits (137), Expect = 3e-08
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 61/290 (21%)
Query: 6 LESPPPYRPDEFKPNHYAPSN---DIYGGEMHV--------------------RPMLSQP 42
+E PP P +PNH +P N D YGG R +
Sbjct: 113 VECSPPASPA--RPNHRSPLNSCKDPYGGSEGTFSSRKEADAVFPRDPYGSLDRHTQTVR 170
Query: 43 AYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSV 102
YS E+ L + S G++RIL ++ +++ +FACV + + D + +L G S
Sbjct: 171 TYSEKVEEYNLRYSYMKSWAGLLRILGVVELLLGAGVFACVTAYIHKDSEW-YNLFGYS- 228
Query: 103 GYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSV-- 160
PYG G G GS YG GY Y G P F+L +A +I ++I V +
Sbjct: 229 -QPYGMGGVGGLGSMYG-----GYYYTGPKTP-----FVLVVAGLAWITTIIILVLGMSM 277
Query: 161 -IRSEMSRTRRYYLSVIIVSAILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQF 219
R+ + + + L+ ++ L I+ A IVY+ N L+ + + A+
Sbjct: 278 YYRTILLDSNWWPLTEFGINVALFILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAV---- 333
Query: 220 YTPAATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRR 269
+C V+ + A++ F+ ++ + + +K R
Sbjct: 334 ----------------FCRVEGGQIAAMIFLFVTMIVYLISALVCLKLWR 367
>gi|13376768 elongation factor RNA polymerase II-like 3 [Homo
sapiens]
Length = 397
Score = 56.6 bits (135), Expect = 5e-08
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 415 DWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEY 474
D++ +Y I S +Q+ Y+++F+T EY+ L + + ++ L E+ R + EY
Sbjct: 286 DYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEY 345
Query: 475 MAAAD----EYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQ 520
D EY + + K Y+ +K C+ L KLSHIK ++ +++ +
Sbjct: 346 KVLEDKIIQEYKKFR--KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEK 393
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 415 DWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDY--REESE 472
D+ +YPP++S+++R Y F E+ LQ E+ +L +L+ L + +
Sbjct: 148 DYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQK 207
Query: 473 EYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQ 520
E AA + + + + K+ C LK KL H+K + +D Q
Sbjct: 208 EAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 45.8 bits (107), Expect = 9e-05
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 13/52 (25%)
Query: 92 GYGTSLLGGSVGYPYG-----------GSGFGSYGSGYGY-GYGYGYGYGGY 131
GYG GG +GY YG G G+G YG G G+ GYGYG G+GGY
Sbjct: 12 GYGCGGFGG-LGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGFGGY 62
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 13/45 (28%)
Query: 100 GSVGYPYGGSG------------FGSYGSGYGY-GYGYGYGYGGY 131
G +GY GG G F GSG GY GYGYG G+GGY
Sbjct: 9 GGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGY 53
Score = 36.6 bits (83), Expect = 0.057
Identities = 26/57 (45%), Positives = 28/57 (49%), Gaps = 17/57 (29%)
Query: 92 GYGTSL-----LGGSVGYP-YG-GSGFGSYG-----SGYGYG-----YGYGYGYGGY 131
GYG LG GY YG GSGFG YG GYGYG Y GYG+ G+
Sbjct: 24 GYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGFGGYGYGCYRPSYYGGYGFSGF 80
Score = 35.4 bits (80), Expect = 0.13
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 91 RGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYG------YGGY 131
R G+ G GY G G+G YGSG+G GYGYG YGGY
Sbjct: 33 RRLGSGCGYGGYGYGSGFGGYG-YGSGFG---GYGYGCYRPSYYGGY 75
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 92 GYGTSLLGGSVGYPYGG----SGFGSYGSGYGY-GYGYGYGYGGY 131
G G+ GS G YGG SGFGSYG G G+ GYGYG G+GGY
Sbjct: 28 GCGSFCRRGS-GCGYGGYGYGSGFGSYGYGSGFGGYGYGSGFGGY 71
Score = 43.5 bits (101), Expect = 5e-04
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 92 GYGTSLLGGSVGYPYG-----------GSGFGSYGSGYGYG-YGYGYGYGGY 131
GY GG +GY YG G G+G YG G G+G YGYG G+GGY
Sbjct: 12 GYSCGGFGG-LGYGYGCGCGSFCRRGSGCGYGGYGYGSGFGSYGYGSGFGGY 62
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/36 (63%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 100 GSVGYPYGGSGFGSYG-----SGYGYGYGY-GYGYG 129
G GY YG SGFGSYG GYGYG G+ GYGYG
Sbjct: 40 GYGGYGYG-SGFGSYGYGSGFGGYGYGSGFGGYGYG 74
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 92 GYGTSLLGGSVGYP--YGGSGFGSYGSGYGYG-----YGYGYGYGGY 131
GYG GS GY +GG G+GS GYGYG Y GYG+ G+
Sbjct: 43 GYGYGSGFGSYGYGSGFGGYGYGSGFGGYGYGCCRPSYNGGYGFSGF 89
Score = 33.5 bits (75), Expect = 0.49
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 100 GSVGYPYGGSGFGSYGSGYGYG------YGYGYGYGGY 131
G +GY GG FG G GYG G G G GYGGY
Sbjct: 9 GGLGYSCGG--FGGLGYGYGCGCGSFCRRGSGCGYGGY 44
Score = 31.2 bits (69), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGY 128
GYG+ G G +GG G+G Y GYG+ Y
Sbjct: 54 GYGSGFGGYGYGSGFGGYGYGCCRPSYNGGYGFSGFY 90
>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
Length = 63
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 8/38 (21%)
Query: 100 GSVGYPYGGSGFGSYGSGYGYGY------GYGYGYGGY 131
G +GY YG GFG +G GYG GY GYG GYGGY
Sbjct: 9 GGLGYGYG--GFGGWGYGYGCGYGSFRRLGYGCGYGGY 44
Score = 34.3 bits (77), Expect = 0.28
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 14/50 (28%)
Query: 92 GYGTSLLGGSVGYPYG-GSGFGSY---GSGYGYGYGYGYG------YGGY 131
GYG GG G+ YG G G+GS+ G G GYG GYG+ YGGY
Sbjct: 12 GYG---YGGFGGWGYGYGCGYGSFRRLGYGCGYG-GYGFSCCRPLYYGGY 57
Score = 30.4 bits (67), Expect = 4.1
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 109 SGFGSYGSGYGYGYG----YGYGYG-GY 131
S + SY G GYGYG +GYGYG GY
Sbjct: 2 SYYRSYYGGLGYGYGGFGGWGYGYGCGY 29
>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
Length = 56
Score = 44.3 bits (103), Expect = 3e-04
Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 106 YGGSGFGSYGSGYGYGY-GYGYGYGGY 131
YGG G+G G GYG GY GYG GYGGY
Sbjct: 8 YGGYGYGGLGCGYGCGYRGYGCGYGGY 34
Score = 34.7 bits (78), Expect = 0.22
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 7/32 (21%)
Query: 103 GYPYGGSGFGSYGSGY---GYGYGYGYGYGGY 131
GY YGG G G YG GY G GYG GYGGY
Sbjct: 10 GYGYGGLGCG-YGCGYRGYGCGYG---GYGGY 37
Score = 31.6 bits (70), Expect = 1.8
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 92 GYGTSLLG-----GSVGYPYGGSGFGSYGSGY----GYGYGYGYGY 128
GYG LG G GY G G+G YG+GY YG + YG+
Sbjct: 10 GYGYGGLGCGYGCGYRGYGCGYGGYGGYGNGYYCPSCYGRYWSYGF 55
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 43.1 bits (100), Expect = 6e-04
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 89 WDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY-GYGYGYGYGGYTDPRAAKG 139
W++GY G Y Y G+G YG GY Y GY YGYG Y++ ++ G
Sbjct: 290 WNQGYSNYWNQGYGNYGYNSQGYGGYG-GYDYTGYNNYYGYGDYSNQQSGYG 340
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 43.1 bits (100), Expect = 6e-04
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 89 WDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGY-GYGYGYGYGGYTDPRAAKG 139
W++GY G Y Y G+G YG GY Y GY YGYG Y++ ++ G
Sbjct: 271 WNQGYSNYWNQGYGNYGYNSQGYGGYG-GYDYTGYNNYYGYGDYSNQQSGYG 321
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 42.7 bits (99), Expect = 8e-04
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGY----GYGYGYGGYTD 133
GYG GG GY GG G+G+ G GYG GY G YG G Y D
Sbjct: 261 GYG----GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYND 302
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYG-YGYGYGYGYGGY 131
G G GGS GY G G+G G GYG G GYG GY Y
Sbjct: 250 GPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 290
Score = 38.1 bits (87), Expect = 0.020
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
G+G S GG P GS F GYG G G+G GY GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 37.0 bits (84), Expect = 0.044
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 92 GYGTSLLGGSVGYPYG---GSGFGSYGSGYGYGY-----GYGYGYGGY 131
G G++ GGS GY G G G+ YG G G G GYG G GGY
Sbjct: 222 GPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGY 269
Score = 30.4 bits (67), Expect = 4.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 99 GGS--VGYPYGGSGFGSYGSGYGYGYG 123
GGS +G PYGG +G GSG GYG
Sbjct: 322 GGSRNMGGPYGGGNYGPGGSGGSGGYG 348
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 42.7 bits (99), Expect = 8e-04
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGY----GYGYGYGGYTD 133
GYG GG GY GG G+G+ G GYG GY G YG G Y D
Sbjct: 249 GYG----GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYND 290
Score = 39.7 bits (91), Expect = 0.007
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYG-YGYGYGYGYGGY 131
G G GGS GY G G+G G GYG G GYG GY Y
Sbjct: 238 GPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNY 278
Score = 38.1 bits (87), Expect = 0.020
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
G+G S GG P GS F GYG G G+G GY GY
Sbjct: 196 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
Score = 37.0 bits (84), Expect = 0.044
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 92 GYGTSLLGGSVGYPYG---GSGFGSYGSGYGYGY-----GYGYGYGGY 131
G G++ GGS GY G G G+ YG G G G GYG G GGY
Sbjct: 210 GPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGY 257
Score = 30.4 bits (67), Expect = 4.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 99 GGS--VGYPYGGSGFGSYGSGYGYGYG 123
GGS +G PYGG +G GSG GYG
Sbjct: 310 GGSRNMGGPYGGGNYGPGGSGGSGGYG 336
>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 92 GYGTSL-LGGSVGYPYG-GSGFG-SYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFC 148
GYG+S G GY G GSG G YG+GYG GYG GYG G + G+ FC
Sbjct: 27 GYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGY-CGYRPFC 85
Query: 149 F 149
F
Sbjct: 86 F 86
Score = 37.4 bits (85), Expect = 0.034
Identities = 23/42 (54%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 93 YGTSL-LGGSVGYPYG---GSGFGS-YGSGYGYGYGYGYGYG 129
YG S G S G YG G G+GS YG GYG GY GYG G
Sbjct: 6 YGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSG 47
Score = 37.0 bits (84), Expect = 0.044
Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYG 129
GYG G S G YG YGSG G GYG GYG G
Sbjct: 23 GYGCGY-GSSYGCGYGTGYSCGYGSGSGCGYGTGYGCG 59
Score = 35.8 bits (81), Expect = 0.098
Identities = 24/54 (44%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 92 GYGTSL---LGGSVGYPYGGSGFGSYGSGY----------GYGYGYGYGYG-GY 131
GYG S G G YG S YG+GY GYG GYG GYG GY
Sbjct: 11 GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGY 64
>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 92 GYGTSL-LGGSVGYPYG-GSGFG-SYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFC 148
GYG+S G GY G GSG G YG+GYG GYG GYG G + G+ FC
Sbjct: 27 GYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGY-CGYRPFC 85
Query: 149 F 149
F
Sbjct: 86 F 86
Score = 37.4 bits (85), Expect = 0.034
Identities = 23/42 (54%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 93 YGTSL-LGGSVGYPYG---GSGFGS-YGSGYGYGYGYGYGYG 129
YG S G S G YG G G+GS YG GYG GY GYG G
Sbjct: 6 YGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSG 47
Score = 37.0 bits (84), Expect = 0.044
Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYG 129
GYG G S G YG YGSG G GYG GYG G
Sbjct: 23 GYGCGY-GSSYGCGYGTGYSCGYGSGSGCGYGTGYGCG 59
Score = 35.8 bits (81), Expect = 0.098
Identities = 24/54 (44%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 92 GYGTSL---LGGSVGYPYGGSGFGSYGSGY----------GYGYGYGYGYG-GY 131
GYG S G G YG S YG+GY GYG GYG GYG GY
Sbjct: 11 GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGY 64
>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 92 GYGTSL-LGGSVGYPYG-GSGFG-SYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFC 148
GYG+S G GY G GSG G YG+GYG GYG GYG G + G+ FC
Sbjct: 57 GYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGYGTGYGCGCGSGSGY-CGYRPFC 115
Query: 149 F 149
F
Sbjct: 116 F 116
Score = 37.4 bits (85), Expect = 0.034
Identities = 23/42 (54%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 93 YGTSL-LGGSVGYPYG---GSGFGS-YGSGYGYGYGYGYGYG 129
YG S G S G YG G G+GS YG GYG GY GYG G
Sbjct: 36 YGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSG 77
Score = 37.0 bits (84), Expect = 0.044
Identities = 20/38 (52%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYG 129
GYG G S G YG YGSG G GYG GYG G
Sbjct: 53 GYGCGY-GSSYGCGYGTGYSCGYGSGSGCGYGTGYGCG 89
Score = 35.8 bits (81), Expect = 0.098
Identities = 24/54 (44%), Positives = 25/54 (46%), Gaps = 14/54 (25%)
Query: 92 GYGTSL---LGGSVGYPYGGSGFGSYGSGY----------GYGYGYGYGYG-GY 131
GYG S G G YG S YG+GY GYG GYG GYG GY
Sbjct: 41 GYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCGY 94
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYG-------YGYGYGYGYGG 130
G G GGS GY GG G+G+ GSGYG Y G G G+GG
Sbjct: 255 GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
Score = 35.8 bits (81), Expect = 0.098
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 91 RGYGTSLLG-GSVGYPYGGSG-FGSYGSGYGYGYGYGYG--YGG 130
RGYG+ G G+ G YGGSG + SY +G G G+G G G +GG
Sbjct: 265 RGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGG 308
Score = 33.9 bits (76), Expect = 0.37
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 92 GYGTSLLG-GSVGYPYGGSGFGSYGSGY-GYGYGYGYGYGGYTDPRAAKGF 140
G G + G G G GG G+G G GY G+G GYG GG ++G+
Sbjct: 217 GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGY 267
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG----SYGSGYGYGYG-YGYGYGG 130
G G + G GY GG G+ YGSG G GYG G GYGG
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSG-GQGYGNQGSGYGG 283
>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 92 GYGTSL---LGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYG 129
GYG+S G GY YG S YG+GY GYG GYG G
Sbjct: 11 GYGSSYGCGYGSGYGYGYGSSYGCGYGTGYSCGYGCGYGSG 51
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/44 (56%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 92 GYGTSLLGGSVGYPYG-GSGFG-----SYGSGYGYGYGYGYGYG 129
GYGT G S GY G GSG+G SYG GYG GY GYG G
Sbjct: 35 GYGT---GYSCGYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSG 75
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 92 GYGTSL-LGGSVGYPYG-GSGFG-SYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFC 148
GYGT G GY G GSG G YG+G+G GYG GYG G + G+ FC
Sbjct: 63 GYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGY-CGYRPFC 121
Query: 149 F 149
F
Sbjct: 122 F 122
Score = 33.9 bits (76), Expect = 0.37
Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 106 YGGS-GFGSYGSGYGYGYGYGYGYG 129
YG S G+GS G GYG GYGYGYG
Sbjct: 6 YGNSCGYGS-SYGCGYGSGYGYGYG 29
>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
Length = 83
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Query: 92 GYGTSLLGGSVGYPYG---GSGFGS---YGSGYGYGYGYGYGYG 129
GYG+ G S G YG G G+GS YGSGYG G GYG GYG
Sbjct: 14 GYGS---GWSSGCGYGCGYGCGYGSGCRYGSGYGTGCGYGCGYG 54
Score = 37.7 bits (86), Expect = 0.026
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 89 WDRGYGTSLLGGSVGYPYG---GSGFGSYGSGYGYGYGYGYGYG-GYT 132
W G G G GY G GSG+G+ G GYG GYG G GYG GY+
Sbjct: 19 WSSGCGYGC-GYGCGYGSGCRYGSGYGT-GCGYGCGYGSGCGYGCGYS 64
Score = 35.0 bits (79), Expect = 0.17
Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 100 GSVGYPYGGSGFGSYGSGYGYGYG----YGYGYG 129
G GY G S YG GYG GYG YG GYG
Sbjct: 11 GGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYG 44
Score = 33.5 bits (75), Expect = 0.49
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 92 GYGTSLLGGSVGYPYG-GSGFG-SYGSGYGYGYGYGYGYGGY 131
GYG+ G G YG G G+G YGSG GYG GY GY
Sbjct: 32 GYGS---GCRYGSGYGTGCGYGCGYGSGCGYGCGYSSSCCGY 70
Score = 30.0 bits (66), Expect = 5.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 107 GGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGF 140
GG G+GS G G GYG GYG G + R G+
Sbjct: 11 GGCGYGS-GWSSGCGYGCGYGCGYGSGCRYGSGY 43
>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
Length = 79
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/45 (55%), Positives = 26/45 (57%), Gaps = 11/45 (24%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGS-----YGSGYGYGYGYGYGYGGY 131
GYGT G GY G GFGS YG+GYG GYG G GY GY
Sbjct: 29 GYGT---GYGCGY---GCGFGSHYGCGYGTGYGCGYGSGSGYCGY 67
Score = 36.2 bits (82), Expect = 0.075
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 92 GYGTSLLGGSVGYPYG---GSGFG-SYGSGYGYGYGYGYGYG 129
GYG+ G G YG G G+G +GS YG GYG GYG G
Sbjct: 19 GYGS---GSGCGCGYGTGYGCGYGCGFGSHYGCGYGTGYGCG 57
Score = 34.3 bits (77), Expect = 0.28
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 99 GGSVGYPYG-GSGFGS-----YGSGYGYGYGYGYGYGGY 131
G S GY G G G+GS G G GYG GYG G+G +
Sbjct: 7 GNSCGYGSGCGCGYGSGSGCGCGYGTGYGCGYGCGFGSH 45
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 77 IAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRA 136
I+I S+ A G G S G + GY GG GSYG G+G G G G G+GG
Sbjct: 67 ISISVAAGSSRAGGFGGGRSSCGFAGGY--GGGFGGSYGGGFGGGRGVGSGFGGAGGFGG 124
Query: 137 AKGF 140
A GF
Sbjct: 125 AGGF 128
Score = 34.3 bits (77), Expect = 0.28
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 75 MCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGS---GYGYGYGYGYGYGG 130
+CI++ + V ST + G + GG G GG GS S GYG G G GYGG
Sbjct: 504 VCISVVSNVTST-SGSSGSSRGVFGGVSGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGG 561
Score = 30.0 bits (66), Expect = 5.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 85 STLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDP 134
S+ + GYG GGS G +GG GSG+G G+G G GG+ P
Sbjct: 86 SSCGFAGGYGGGF-GGSYGGGFGGG--RGVGSGFGGAGGFG-GAGGFGGP 131
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKG 139
G G GGS G GGSG G+YG G G G G G GYGG + R G
Sbjct: 537 GSGGGHSGGSGGGHSGGSG-GNYGGGSGSGGGSGGGYGGGSGSRGGSG 583
Score = 40.4 bits (93), Expect = 0.004
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 84 ASTLAWDRGYGTSLLGGSVGYPYG-----GSGFGSYGSGYGYGYGYGYGYGGY 131
AS+L G G+ GG+ G Y G GFG GSG G+G GYG G+GG+
Sbjct: 83 ASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGG-GSGGGFGGGYGSGFGGF 134
Score = 36.6 bits (83), Expect = 0.057
Identities = 22/45 (48%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 92 GYGTSLLGGSVGYPYGGSGF------GSYGSGYGYGYGYGYGYGG 130
G G S GG G YGG GSYG G G G G G GYGG
Sbjct: 492 GSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGG 536
Score = 35.8 bits (81), Expect = 0.098
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
GY +S G G +GG G +G GYG G+G G+GG
Sbjct: 104 GYSSS---GGFGGGFGGGSGGGFGGGYGSGFGGFGGFGG 139
Score = 35.8 bits (81), Expect = 0.098
Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
G G+ GGS G GGSG G GSG GYG G G G+ G
Sbjct: 507 GGGSGSRGGSGGSYGGGSGSGG-GSGGGYGGGSGGGHSG 544
Score = 33.9 bits (76), Expect = 0.37
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 93 YGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
YG GGS G GG G YG G G G G YGG
Sbjct: 485 YGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGG 522
Score = 33.9 bits (76), Expect = 0.37
Identities = 23/46 (50%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG-----SYGSG---YGYGYGYGYGYG 129
G G+ GGS G GGSGFG SYG G G G GYG G G
Sbjct: 573 GGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSG 618
Score = 33.1 bits (74), Expect = 0.63
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 99 GGSVGYPY-GGSGFGSYGSGYGYGYGYG-YGYGG 130
GGS GY Y GGSG G S G G+G G G+GG
Sbjct: 66 GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGG 99
Score = 32.3 bits (72), Expect = 1.1
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG-SYGSGYGYGYGYGYGYGG 130
G G+ GGS G GGSG G S GSG G+ G G YGG
Sbjct: 521 GGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGG 560
Score = 31.2 bits (69), Expect = 2.4
Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGF 140
G G GGS G GGSG G GSG GYG G G G GF
Sbjct: 545 GSGGGHSGGSGGNYGGGSGSGG-GSGGGYGGGSGSRGGSGGSHGGGSGF 592
Score = 30.8 bits (68), Expect = 3.1
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
G G S GY G S G G +GY YG G GG
Sbjct: 41 GGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGG 79
Score = 29.6 bits (65), Expect = 7.0
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 94 GTSLLGGSVGYPYG------GSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKG 139
G S GG G YG G GS+G G G+G G YGG + + G
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGG 611
Score = 29.3 bits (64), Expect = 9.2
Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSG--------YGYGYGYGYGYGGYTDPRAAKG 139
G G LGG GGSG GSYG G YG G G G GYGG + R G
Sbjct: 469 GAGKIGLGGR-----GGSG-GSYGRGSRGGSGGSYG-GGGSGGGYGGGSGSRGGSG 517
>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
Length = 72
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 15/46 (32%)
Query: 100 GSVGYPYGG---SGFG-----------SYGSGYGYGYGYGYGYGGY 131
G +GY YGG G+G YG GYG GYGYG G+GGY
Sbjct: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG-GYGYGSGFGGY 53
Score = 35.8 bits (81), Expect = 0.098
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 90 DRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYG------YGGY 131
D GYG GS G G+G YG G G+G GYGY YGGY
Sbjct: 20 DLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFG-GYGYRSCRPSCYGGY 66
Score = 31.2 bits (69), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 16/42 (38%)
Query: 106 YGGSGFGSYGSGY------GYGY----------GYGYGYGGY 131
Y G+ +G G GY GYGY GYG GYGGY
Sbjct: 3 YYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY 44
>gi|155969697 keratin 6C [Homo sapiens]
Length = 564
Score = 39.3 bits (90), Expect = 0.009
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 GYGTSLLGGSVGYPYGGS-GFGSYGSGYGYGYGYGYGYG 129
G G+ + G G GGS GFG GSG+G+G G G G+G
Sbjct: 73 GGGSCAISGGYGSRAGGSYGFGGAGSGFGFGGGAGIGFG 111
Score = 34.3 bits (77), Expect = 0.28
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG-----SYGSGYGYGYGYGYGYGG 130
GYG S GGS G+ GSGFG G G G G G G+GG
Sbjct: 82 GYG-SRAGGSYGFGGAGSGFGFGGGAGIGFGLGGGAGLAGGFGG 124
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 442 EYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCK 501
+ ++ + E+ EIN+ + RL E+D +++ AA + + +G K KN +
Sbjct: 373 DLRNTKQEIAEINRMIQRLRSEIDHVKKQCASLQAAIAD----AEQRGEMALKDAKNKLE 428
Query: 502 QLKSKLSHIKK 512
L+ L K+
Sbjct: 429 GLEDALQKAKQ 439
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 96 SLLGGSVGYPYGG-SGFGS---YGSGYGYGYGYGYGYGG 130
S++ ++ YGG SG GS G G Y YG G G GG
Sbjct: 487 SVVQSTISSGYGGASGVGSGLGLGGGSSYSYGSGLGIGG 525
>gi|5031839 keratin 6A [Homo sapiens]
Length = 564
Score = 39.3 bits (90), Expect = 0.009
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 GYGTSLLGGSVGYPYGGS-GFGSYGSGYGYGYGYGYGYG 129
G G+ + G G GGS GFG GSG+G+G G G G+G
Sbjct: 73 GGGSCAISGGYGSRAGGSYGFGGAGSGFGFGGGAGIGFG 111
Score = 34.3 bits (77), Expect = 0.28
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG-----SYGSGYGYGYGYGYGYGG 130
GYG S GGS G+ GSGFG G G G G G G+GG
Sbjct: 82 GYG-SRAGGSYGFGGAGSGFGFGGGAGIGFGLGGGAGLAGGFGG 124
Score = 30.0 bits (66), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 96 SLLGGSVGYPYGG-SGFGS---YGSGYGYGYGYGYGYGG 130
S++ +V YGG SG GS G G Y YG G G GG
Sbjct: 487 SVVQSTVSSGYGGASGVGSGLGLGGGSSYSYGSGLGVGG 525
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 442 EYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCK 501
+ ++ + E+ EIN+ + RL E+D +++ AA + + +G K KN +
Sbjct: 373 DLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIAD----AEQRGEMALKDAKNKLE 428
Query: 502 QLKSKLSHIKK 512
L+ L K+
Sbjct: 429 GLEDALQKAKQ 439
>gi|119703753 keratin 6B [Homo sapiens]
Length = 564
Score = 39.3 bits (90), Expect = 0.009
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 92 GYGTSLLGGSVGYPYGGS-GFGSYGSGYGYGYGYGYGYG 129
G G+ + G G GGS GFG GSG+G+G G G G+G
Sbjct: 73 GGGSCAISGGYGSRAGGSYGFGGAGSGFGFGGGAGIGFG 111
Score = 34.3 bits (77), Expect = 0.28
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 92 GYGTSLLGGSVGYPYGGSGFG-----SYGSGYGYGYGYGYGYGG 130
GYG S GGS G+ GSGFG G G G G G G+GG
Sbjct: 82 GYG-SRAGGSYGFGGAGSGFGFGGGAGIGFGLGGGAGLAGGFGG 124
Score = 30.0 bits (66), Expect = 5.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 96 SLLGGSVGYPYGG-SGFGS---YGSGYGYGYGYGYGYGG 130
S++ +V YGG SG GS G G Y YG G G GG
Sbjct: 487 SVVQSTVSSGYGGASGVGSGLGLGGGSSYSYGSGLGVGG 525
Score = 29.6 bits (65), Expect = 7.0
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 442 EYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCK 501
+ ++ + E+ EIN+ + RL E+D +++ AA + + +G K KN +
Sbjct: 373 DLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIAD----AEQRGEMALKDAKNKLE 428
Query: 502 QLKSKLSHIKK 512
L+ L K+
Sbjct: 429 GLEDALQKAKQ 439
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 38.9 bits (89), Expect = 0.012
Identities = 20/38 (52%), Positives = 21/38 (55%)
Query: 94 GTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
G S GG GY GGS +GS G YG G G G G G Y
Sbjct: 515 GGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSY 552
Score = 37.4 bits (85), Expect = 0.034
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 93 YGTSLLGGSVGYPYGGSGFGSYGSGY---GYGYGYGYGYGGYTDPRAAKG 139
YG+ GGS G GG G GSYGSG GY G G G GG + R + G
Sbjct: 559 YGSG--GGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGG 606
Score = 37.0 bits (84), Expect = 0.044
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 99 GGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
GG G GG GFG +GSG G G G+G GGY
Sbjct: 107 GGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGY 139
Score = 35.0 bits (79), Expect = 0.17
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 99 GGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGF 140
GG Y GGS +GS G YG G G G G+G Y ++ G+
Sbjct: 547 GGRGSYGSGGSSYGSGGGSYGSG-GGGGGHGSYGSGSSSGGY 587
Score = 34.7 bits (78), Expect = 0.22
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 83 VASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
++ ++A G G+ GG G +GG GFG G G+G G G G+GG+
Sbjct: 76 ISISVARGGGRGSGFGGGYGGGGFGGGGFG--GGGFGGGGIGGGGFGGF 122
Score = 33.9 bits (76), Expect = 0.37
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
GYG GG G +GG GFG G G G G+G G GG+
Sbjct: 93 GYGG---GGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGF 129
Score = 33.5 bits (75), Expect = 0.49
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYG-YGYGYGYGGY 131
G G+ GGS Y GG +GS G G G+G YG G GGY
Sbjct: 548 GRGSYGSGGS-SYGSGGGSYGSGGGGGGHGSYGSGSSSGGY 587
Score = 33.1 bits (74), Expect = 0.63
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKG 139
G+G +GG G GFGS G G+G G G GYGG P G
Sbjct: 108 GFGGGGIGGG-----GFGGFGSGGGGFGGGGFGGGGYGGGYGPVCPPG 150
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 93 YGTSLLGGSVGYPYGGSG----FGSYGSGYGYGYG-YGYGYGG 130
YG+ GGS G GG G +GS GS YG G G YG G GG
Sbjct: 532 YGSG--GGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGG 572
Score = 30.8 bits (68), Expect = 3.1
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 99 GGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
GG G GSG SYGSG G YG G G GG+
Sbjct: 544 GGGGGRGSYGSGGSSYGSG-GGSYGSGGGGGGH 575
Score = 29.6 bits (65), Expect = 7.0
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 98 LGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
LGGS + G GSG+G GYG G G+GG
Sbjct: 70 LGGSKSISISVARGGGRGSGFGGGYG-GGGFGG 101
Score = 29.6 bits (65), Expect = 7.0
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYG----YGYG---YGYGYGGY 131
GYG+ GGS Y GG +GS G G G YG G YG G G Y
Sbjct: 524 GYGS---GGS-SYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSY 566
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 38.9 bits (89), Expect = 0.012
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 93 YGTSLLGGSVGYPYGGSGF--GSYGSGY---------GYGYGYGYGYGG 130
YG+S GGS G +GG F GS+G G G+G G+G G+GG
Sbjct: 89 YGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGG 137
Score = 36.2 bits (82), Expect = 0.075
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 99 GGSVGYPYGG--SGFGSYGSGYGYGYG--YGYGYGGYTDPRAAKG 139
GGS G YGG SG GS G G+G G+G G GYGG + + G
Sbjct: 466 GGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSG 510
Score = 34.3 bits (77), Expect = 0.28
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYG 129
GYG GGS +GGS G YG G G G GYG G
Sbjct: 512 GYG----GGSSSGGHGGSSSGGYGGGSSGGGGGGYGGG 545
Score = 33.5 bits (75), Expect = 0.49
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
G G+S GG G +GGS G YG G G G GYGG
Sbjct: 479 GGGSS--GGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGG 515
Score = 33.1 bits (74), Expect = 0.63
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 99 GGSVGYPYGG--SGFGSYGSGYGYGYGYGYGYGG 130
GGS G YGG SG GS G GYG G G G+GG
Sbjct: 492 GGSSGGGYGGGSSGGGSSGGGYGGGSSSG-GHGG 524
Score = 32.3 bits (72), Expect = 1.1
Identities = 18/39 (46%), Positives = 19/39 (48%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGG 130
G+G S GG G GG G G G G G G GYGG
Sbjct: 521 GHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGG 559
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 96 SLLGGSVGYPYGGSGFGSYGSGYG--------YGYGYGYGYGG 130
SLL G GG G GS+G GYG G G+G G+GG
Sbjct: 451 SLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGG 493
Score = 30.8 bits (68), Expect = 3.1
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 92 GYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGY 131
GYG GG G GGS G GS G GYG G GG+
Sbjct: 529 GYGGGSSGGGGGGYGGGSSGG--GSSSGGGYGGGSSSGGH 566
Score = 29.6 bits (65), Expect = 7.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 99 GGSVGYPYGGSGF-GSYGSGYGYGYGYGYGYGG 130
GGS YG S F GSYG +G G G +GG
Sbjct: 82 GGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGG 114
Score = 29.6 bits (65), Expect = 7.0
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 92 GYGT-SLLGGSVGYPYGG-SGFGSYGSGYGYGYGYGYGYGG 130
GYG S GGS G YGG S G +G GYG G GG
Sbjct: 498 GYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGG 538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,992,930
Number of Sequences: 37866
Number of extensions: 1112689
Number of successful extensions: 7678
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 5658
Number of HSP's gapped (non-prelim): 1378
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.