ELL 33345

Name: ELL	Sequence: fasta or formatted (621aa)		NCBI GI: 5729812
Description: elongation factor RNA polymerase II		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.3 58 3 C cysteine 2.1 13 1 D aspartate 6.4 40 2 E glutamate 4.5 28 3 F phenylalanine 1.9 12 1 G glycine 6.4 40 2 H histidine 2.7 17 1 I isoleucine 3.2 20 1 K lysine 6.4 40 3 L leucine 9.0 56 3 M methionine 0.6 4 1 N asparagine 2.1 13 1 P proline 7.9 49 2 Q glutamine 6.6 41 2 R arginine 8.2 51 2 S serine 10.1 63 3 T threonine 5.0 31 2 V valine 3.9 24 1 W tryptophan 0.3 2 1 Y tyrosine 3.1 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 elongation factor RNA polymerase II ELL2 0.430 elongation factor, RNA polymerase II, 2 ELL3 0.082 elongation factor RNA polymerase II-like 3 MARVELD2 0.052 MARVEL domain containing 2 isoform 1 OCLN 0.048 occludin OCEL1 0.029 occludin/ELL domain containing 1 COL3A1 0.021 collagen type III alpha 1 preproprotein NACA 0.020 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.015 PREDICTED: hypothetical protein FLJ22184 LOC100293055 0.014 PREDICTED: similar to COL22A1 protein FLJ22184 0.012 PREDICTED: hypothetical protein FLJ22184 CPSF6 0.012 cleavage and polyadenylation specific factor 6, 68 ... FLJ22184 0.012 PREDICTED: hypothetical protein LOC80164 COL23A1 0.012 collagen, type XXIII, alpha 1 MLL2 0.011 myeloid/lymphoid or mixed-lineage leukemia 2 C15orf42 0.011 leucine-rich repeat kinase 1 LOC100131880 0.011 PREDICTED: hypothetical protein WIPF1 0.011 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.011 WAS/WASL interacting protein family, member 1 NFIC 0.011 nuclear factor I/C isoform 2 COL12A1 0.011 collagen, type XII, alpha 1 short isoform precursor ... COL12A1 0.011 collagen, type XII, alpha 1 long isoform precursor [... WIPF3 0.011 WAS/WASL interacting protein family, member 3 [Homo... CXXC1 0.011 CXXC finger 1 (PHD domain) isoform 2 CCDC102B 0.011 coiled-coil domain containing 102B CCDC102B 0.011 coiled-coil domain containing 102B C10orf47 0.011 hypothetical protein LOC254427 COL15A1 0.011 alpha 1 type XV collagen precursor LOC100133756 0.011 PREDICTED: hypothetical protein, partial TBC1D10B 0.011 TBC1 domain family, member 10B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.