Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC647262 Sequence: fasta or formatted (129aa) NCBI GI: 239744833
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           15.5         20           2
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       2.3          3           1
 G glycine            37.2         48           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             0.0          0           0
 M methionine          0.8          1           1
 N asparagine          1.6          2           1
 P proline             0.8          1           1
 Q glutamine           0.0          0           0
 R arginine            2.3          3           2
 S serine             14.7         19           2
 T threonine           3.1          4           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine           21.7         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC731932             0.626   PREDICTED: hypothetical protein 
LOC731932             0.626   PREDICTED: hypothetical protein 
LOC731932             0.609   PREDICTED: hypothetical protein 
KRTAP21-1             0.405   keratin associated protein 21-1 
KRTAP21-2             0.347   keratin associated protein 21-2 
KRTAP6-3              0.252   keratin associated protein 6-3 
KRT9                  0.201   keratin 9 
KRTAP19-1             0.197   keratin associated protein 19-1 
LOR                   0.184   loricrin 
KRT10                 0.177   keratin 10 
KRTAP6-1              0.177   keratin associated protein 6-1 
KRTAP19-3             0.167   keratin associated protein 19-3 
TAF15                 0.160   TBP-associated factor 15 isoform 2 
TAF15                 0.160   TBP-associated factor 15 isoform 1 
KRT1                  0.156   keratin 1 
KRTAP5-1              0.156   keratin associated protein 5-1 
KRT13                 0.150   keratin 13 isoform b 
KRT13                 0.150   keratin 13 isoform a 
TRO                   0.146   trophinin isoform 5 
KRT16                 0.146   keratin 16 
KRT3                  0.146   keratin 3 
KRT2                  0.143   keratin 2 
KRTAP6-2              0.139   keratin associated protein 6-2 
KRTAP20-2             0.133   keratin associated protein 20-2 
KRTAP5-5              0.133   keratin associated protein 5-5 
KRTAP5-4              0.129   keratin associated protein 5-4 
HNRNPA2B1             0.126   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.126   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KRTAP5-2              0.126   keratin associated protein 5-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press