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Search of human proteins with 4504989
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504989 luteinizing hormone beta subunit precursor [Homo sapi... 304 1e-83
gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo... 248 9e-67
gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor... 248 9e-67
gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor... 248 9e-67
gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor... 246 4e-66
gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo sa... 242 6e-65
gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo sa... 239 5e-64
gi|115430099 thyroid stimulating hormone, beta precursor [Homo s... 100 7e-22
gi|66528995 follicle stimulating hormone, beta polypeptide precu... 91 2e-19
gi|4503791 follicle stimulating hormone, beta polypeptide precur... 91 2e-19
gi|134031945 SCO-spondin [Homo sapiens] 33 0.060
gi|14917117 keratin 33A [Homo sapiens] 31 0.39
gi|15431318 keratin 38 [Homo sapiens] 30 0.66
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 29 1.5
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 29 1.5
gi|108773804 Fraser syndrome 1 [Homo sapiens] 28 2.5
gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens] 28 2.5
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 28 3.3
gi|214010149 gamma-glutamyl carboxylase isoform 2 [Homo sapiens] 27 4.3
gi|21361163 gamma-glutamyl carboxylase isoform 1 [Homo sapiens] 27 4.3
gi|161019170 mucin 5AC [Homo sapiens] 27 5.6
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 27 5.6
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 27 5.6
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 27 5.6
gi|10863911 serine protease inhibitor, Kazal type 2 (acrosin-try... 27 5.6
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 26 9.5
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 26 9.5
gi|28466969 prostaglandin D2 receptor [Homo sapiens] 26 9.5
>gi|4504989 luteinizing hormone beta subunit precursor [Homo
sapiens]
Length = 141
Score = 304 bits (779), Expect = 1e-83
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC
Sbjct: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
Query: 121 GGPKDHPLTCDHPQLSGLLFL 141
GGPKDHPLTCDHPQLSGLLFL
Sbjct: 121 GGPKDHPLTCDHPQLSGLLFL 141
>gi|4502789 chorionic gonadotropin beta 3 subunit precursor [Homo
sapiens]
Length = 165
Score = 248 bits (634), Expect = 9e-67
Identities = 115/134 (85%), Positives = 121/134 (90%)
Query: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDHPQ 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDDPR 134
>gi|15451748 chorionic gonadotropin, beta polypeptide 5 precursor
[Homo sapiens]
Length = 165
Score = 248 bits (634), Expect = 9e-67
Identities = 115/134 (85%), Positives = 121/134 (90%)
Query: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDHPQ 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDDPR 134
>gi|15426252 chorionic gonadotropin, beta polypeptide 8 precursor
[Homo sapiens]
Length = 165
Score = 248 bits (634), Expect = 9e-67
Identities = 115/134 (85%), Positives = 121/134 (90%)
Query: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDHPQ 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDDPR 134
>gi|15451750 chorionic gonadotropin, beta polypeptide 7 precursor
[Homo sapiens]
Length = 165
Score = 246 bits (628), Expect = 4e-66
Identities = 115/134 (85%), Positives = 120/134 (89%)
Query: 1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT 60
MEM QGLLLLLLLSMGG WASRE LRP C PINA LAVEKEGCPVCITVNTTICAGYCPT
Sbjct: 1 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT 60
Query: 61 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
M RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DC
Sbjct: 61 MTRVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC 120
Query: 121 GGPKDHPLTCDHPQ 134
GGPKDHPLTCD P+
Sbjct: 121 GGPKDHPLTCDDPR 134
>gi|132566538 chorionic gonadotropin, beta polypeptide 2 [Homo
sapiens]
Length = 163
Score = 242 bits (618), Expect = 6e-65
Identities = 112/132 (84%), Positives = 119/132 (90%)
Query: 3 MLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMM 62
M +GLLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPTM
Sbjct: 1 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGG 122
RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDHPQ 134
PKDHPLTCD P+
Sbjct: 121 PKDHPLTCDDPR 132
>gi|132566537 chorionic gonadotropin, beta polypeptide 1 [Homo
sapiens]
Length = 155
Score = 239 bits (610), Expect = 5e-64
Identities = 111/132 (84%), Positives = 118/132 (89%)
Query: 3 MLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMM 62
M + LLLLLLLSMGG WAS+EPLRP C PINA LAVEKEGCPVCITVNTTICAGYCPTM
Sbjct: 1 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT 60
Query: 63 RVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGG 122
RVLQ VLP LPQVVC YRDVRFESIRLPGCPRGV+PVVS+ VALSC+C CRRST+DCGG
Sbjct: 61 RVLQGVLPALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGG 120
Query: 123 PKDHPLTCDHPQ 134
PKDHPLTCD P+
Sbjct: 121 PKDHPLTCDDPR 132
>gi|115430099 thyroid stimulating hormone, beta precursor [Homo
sapiens]
Length = 138
Score = 99.8 bits (247), Expect = 7e-22
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 28 WCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPP--LPQVVCTYRDVRFE 85
+C P + +E+ C C+T+NTTICAGYC T + LP L Q VCTYRD +
Sbjct: 21 FCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYR 80
Query: 86 SIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLL 139
++ +PGCP V P S+PVALSC+CG C SDC C PQ S L+
Sbjct: 81 TVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYLV 134
>gi|66528995 follicle stimulating hormone, beta polypeptide
precursor [Homo sapiens]
Length = 129
Score = 91.3 bits (225), Expect = 2e-19
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 29 CHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIR 88
C N +A+EKE C CI++NTT CAGYC T V + P Q CT++++ +E++R
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFKELVYETVR 80
Query: 89 LPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
+PGC D + ++PVA C CG C ++DC
Sbjct: 81 VPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|4503791 follicle stimulating hormone, beta polypeptide precursor
[Homo sapiens]
Length = 129
Score = 91.3 bits (225), Expect = 2e-19
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 29 CHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIR 88
C N +A+EKE C CI++NTT CAGYC T V + P Q CT++++ +E++R
Sbjct: 21 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFKELVYETVR 80
Query: 89 LPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC 120
+PGC D + ++PVA C CG C ++DC
Sbjct: 81 VPGCAHHADSLYTYPVATQCHCGKCDSDSTDC 112
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 33.5 bits (75), Expect = 0.060
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 49 VNTTICAGYCPTMMRVLQAVLPPLPQV-----VCTYR-----DVRFESIRLPGCPRGVDP 98
V + C+GYCP+ V+P P + C+YR VR ++R C G
Sbjct: 5072 VEVSYCSGYCPSSTH----VMPEEPYLQSQCDCCSYRLDPESPVRILNLR---CLGGHTE 5124
Query: 99 VVSFPVALSCRCGPCR 114
V PV SC+C C+
Sbjct: 5125 PVVLPVIHSCQCSSCQ 5140
Score = 27.3 bits (59), Expect = 4.3
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 25 LRPWCHPINAILAVEKEGCPVCITVNTTI---CAGYCPTMMRVLQAVL--PPLPQVVCTY 79
LRP C +++GC C+ ++ C+ C + + L PPLP C
Sbjct: 2485 LRPDCQD-----GSDEDGCVDCVLAPWSVWSSCSRSCGLGLTFQRQELLRPPLPGGSCPR 2539
Query: 80 RDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHP 133
R +S + CP V+ A+ GPC S S GG + +C P
Sbjct: 2540 DRFRSQSCFVQACP------VAGAWAMWEAWGPC--SVSCGGGHQSRQRSCVDP 2585
Score = 26.2 bits (56), Expect = 9.5
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 69 LPPLPQVVCTYRDVRFESIRLPGCPR--GVDPVVSFPVALSCRCGPCRRSTSDCGGP-KD 125
LP P +C+ + E L GC R G P GP + CGG +
Sbjct: 3226 LPATPTPLCSGPEAEEEPCLLQGCDRAGGWGP-----------WGPWSHCSRSCGGGLRS 3274
Query: 126 HPLTCDHPQLSGL 138
CD P GL
Sbjct: 3275 RTRACDQPPPQGL 3287
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 0.39
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 63 RVLQAVLPPLPQVVCTYRDV-RFESIRLPG--------CPRGVDPVVSFPVALSCRCGPC 113
+VL V L + TYR + E +LP C + P +S P L RCGPC
Sbjct: 340 QVLLDVRARLECEINTYRSLLESEDCKLPSNPCATTNACDKSTGPCISNPCGLRARCGPC 399
>gi|15431318 keratin 38 [Homo sapiens]
Length = 456
Score = 30.0 bits (66), Expect = 0.66
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 63 RVLQAVLPPLPQVVCTYRDV-RFESIRLPGCPRGVDP-VVSFPVALSCRCGPCRRSTSDC 120
+VL V L + TYR++ E +LP P P V+ P A CGPC C
Sbjct: 388 QVLLDVKTRLENEIATYRNLLESEDCKLPCNPCSTSPSCVTAPCAPRPSCGPCTTCGPTC 447
Query: 121 G 121
G
Sbjct: 448 G 448
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 28.9 bits (63), Expect = 1.5
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 40 KEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPV 99
+E CP +C +CP M Q + CT + + CPRG
Sbjct: 302 QENCPERHVAVKGVCK-HCPEMC---QDCIHEKTCKECTPEFFLHDDMCHQSCPRGF--- 354
Query: 100 VSFPVALSCRCGPCRRSTSDCGGPK 124
A S C PC + +C GPK
Sbjct: 355 ----YADSRHCVPCHKDCLECSGPK 375
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 28.9 bits (63), Expect = 1.5
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 40 KEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPV 99
+E CP +C +CP M Q + CT + + CPRG
Sbjct: 302 QENCPERHVAVKGVCK-HCPEMC---QDCIHEKTCKECTPEFFLHDDMCHQSCPRGF--- 354
Query: 100 VSFPVALSCRCGPCRRSTSDCGGPK 124
A S C PC + +C GPK
Sbjct: 355 ----YADSRHCVPCHKDCLECSGPK 375
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 28.1 bits (61), Expect = 2.5
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 56 GYCPTMMRVLQAVLPPLPQ-VVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCR 114
G C + + P P+ + CT + V + + CP G + + RC C
Sbjct: 556 GTCSACDQSCDSCGPSSPRCLTCTEKTVLHDGKCMSECPGG------YYADATGRCKVCH 609
Query: 115 RSTSDCGGP-KDHPLTCDHPQ 134
S + C GP H C P+
Sbjct: 610 NSCASCSGPTPSHCTACSPPK 630
>gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]
Length = 1393
Score = 28.1 bits (61), Expect = 2.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 1 MEMLQGLLLLLLLS---MGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGY 57
M+ L LLL LLS +G W S C+P++ + A+E P +++ C+G
Sbjct: 824 MQRLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAP--PSLVSLG---CSGG 878
Query: 58 CPTM 61
CP +
Sbjct: 879 CPRL 882
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.7 bits (60), Expect = 3.3
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 29 CHPINAILAVEK--EGCPVCITVNTTI-----CAGYCPTMMRVLQAV-LPPLPQVVCTYR 80
CH N +A+E + P C ++ + G PT +++ LPP P+ R
Sbjct: 206 CHSYNECVALEYRCDRRPDCRDMSDELNCEEPVLGISPTFSLLVETTSLPPRPETTIM-R 264
Query: 81 DVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKD 125
P P V P+ P +CR G C C G +D
Sbjct: 265 QPPVTHAPQPLLPGSVRPLPCGPQEAACRNGHCIPRDYLCDGQED 309
>gi|214010149 gamma-glutamyl carboxylase isoform 2 [Homo sapiens]
Length = 701
Score = 27.3 bits (59), Expect = 4.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 57 YCPTMMRVLQAVLP----PLPQVVCTYRDVRFESIRLPG 91
YCP R LQ +LP P P V C Y+ R +S + PG
Sbjct: 265 YCP---RRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPG 300
>gi|21361163 gamma-glutamyl carboxylase isoform 1 [Homo sapiens]
Length = 758
Score = 27.3 bits (59), Expect = 4.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 57 YCPTMMRVLQAVLP----PLPQVVCTYRDVRFESIRLPG 91
YCP R LQ +LP P P V C Y+ R +S + PG
Sbjct: 322 YCP---RRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPG 357
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 26.9 bits (58), Expect = 5.6
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 41 EGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTY-RDVRFESIRLPGCPRGVDPV 99
+GC VN T C G CP + Q C R V E++ L CP G +
Sbjct: 6007 QGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL-HCPNGSAIL 6063
Query: 100 VSFPVALSCRCG 111
++ A+ CG
Sbjct: 6064 HTYTHAVQVLCG 6075
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 26.9 bits (58), Expect = 5.6
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 27 PWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQV 75
P C ++ + ++ C VC IC CP L + PPL ++
Sbjct: 86 PVCMGVSCLCQKNEDECAVCRDGGELICCDGCPRAFH-LACLSPPLREI 133
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 26.9 bits (58), Expect = 5.6
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 92 CPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPK 124
CPRG A S C PC + +C GPK
Sbjct: 350 CPRGF-------YADSHHCVPCHKDCLECSGPK 375
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 26.9 bits (58), Expect = 5.6
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 41 EGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTY-RDVRFESIRLPGCPRGVDPV 99
+GC VN T C G CP + Q C R V E++ L CP G +
Sbjct: 5673 QGCET--EVNITFCEGSCPGASKYSAEAQAMQHQCTCCQERRVHEETVPL-HCPNGSAIL 5729
Query: 100 VSFPVALSCRCGP 112
++ C C P
Sbjct: 5730 HTYTHVDECGCTP 5742
>gi|10863911 serine protease inhibitor, Kazal type 2
(acrosin-trypsin inhibitor) [Homo sapiens]
Length = 84
Score = 26.9 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 79 YRDVRFESIRLPGCPRGVDPV 99
YR RLPGCPR +PV
Sbjct: 31 YRTPNCSQYRLPGCPRHFNPV 51
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 26.2 bits (56), Expect = 9.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 29 CHPINAILAVEKEGCPVCITVNTTICAGYC 58
CH N++ +K CP+ N T+ G C
Sbjct: 339 CHCQNSVTICKKVSCPIMPCSNATVPDGEC 368
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 26.2 bits (56), Expect = 9.5
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 46 CITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFP-- 103
C T C G C + R+ Q P+ C V + +P C RG+ P ++ P
Sbjct: 2296 CPTAKAPTC-GLCE-VARLRQNADQCCPEYECVCDPVSCDLPPVPHCERGLQPTLTNPGE 2353
Query: 104 ----VALSCRCGPCRR 115
+CR C+R
Sbjct: 2354 CRPNFTCACRKEECKR 2369
>gi|28466969 prostaglandin D2 receptor [Homo sapiens]
Length = 359
Score = 26.2 bits (56), Expect = 9.5
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 3 MLQGLLLLLLLSMGG-AWASREPLRP 27
+L LL L LL+ G W SR PLRP
Sbjct: 31 LLGNLLALGLLARSGLGWCSRRPLRP 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.144 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,560,390
Number of Sequences: 37866
Number of extensions: 303581
Number of successful extensions: 966
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 37
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.