| Name: RPAP1 | Sequence: fasta or formatted (1393aa) | NCBI GI: 24430139 | |
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Description: RNA polymerase II associated protein 1
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Referenced in: RNA Polymerase and General Transcription Factors
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 10.3 143 3 C cysteine 1.9 27 1 D aspartate 3.8 53 2 E glutamate 6.5 91 3 F phenylalanine 2.9 40 1 G glycine 5.3 74 3 H histidine 2.9 40 3 I isoleucine 1.9 27 2 K lysine 1.9 27 2 L leucine 16.8 234 3 M methionine 1.4 19 1 N asparagine 1.5 21 1 P proline 8.9 124 3 Q glutamine 5.7 80 2 R arginine 6.7 93 2 S serine 7.8 109 2 T threonine 4.9 68 1 V valine 5.8 81 2 W tryptophan 1.2 17 1 Y tyrosine 1.8 25 2 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 RNA polymerase II associated protein 1 TTN 0.005 titin isoform N2-A SHROOM3 0.005 shroom family member 3 protein DET1 0.005 de-etiolated 1 isoform 1 DET1 0.005 de-etiolated 1 isoform 2 SHANK3 0.004 SH3 and multiple ankyrin repeat domains 3 ACIN1 0.004 apoptotic chromatin condensation inducer 1 CEP250 0.004 centrosomal protein 2 AMOT 0.004 angiomotin isoform 1 TCHH 0.004 trichohyalin SCARF2 0.004 scavenger receptor class F, member 2 isoform 1 [Homo... SCARF2 0.004 scavenger receptor class F, member 2 isoform 2 [Homo... KIAA0754 0.004 hypothetical protein LOC643314 TNXB 0.004 tenascin XB isoform 2 TNXB 0.004 tenascin XB isoform 1 precursor CAND2 0.003 TBP-interacting protein isoform 1 CAND2 0.003 TBP-interacting protein isoform 2 SIPA1 0.003 signal-induced proliferation-associated protein 1 [... SIPA1 0.003 signal-induced proliferation-associated protein 1 [... CEP110 0.003 centrosomal protein 110kDa DAXX 0.003 death-domain associated protein isoform a DAXX 0.003 death-domain associated protein isoform a DAXX 0.003 death-domain associated protein isoform b LOC100128719 0.003 PREDICTED: hypothetical protein, partial LOC100128719 0.003 PREDICTED: hypothetical protein, partial TMEM176B 0.003 transmembrane protein 176B isoform b LOC390638 0.003 PREDICTED: similar to hCG32587 BCL7C 0.003 B-cell CLL/lymphoma 7C SCN5A 0.003 voltage-gated sodium channel type V alpha isoform a ... SCN5A 0.003 voltage-gated sodium channel type V alpha isoform d...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
