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Search of human proteins with 42822891
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42822891 hypothetical protein LOC84299 [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42822891 hypothetical protein LOC84299 [Homo sapiens] 234 1e-62
gi|33186895 selenoprotein V [Homo sapiens] 42 1e-04
gi|4506887 selenoprotein W, 1 [Homo sapiens] 41 2e-04
gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens] 35 0.010
gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens] 35 0.010
gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens] 35 0.010
gi|42789380 selenoprotein T [Homo sapiens] 35 0.010
gi|31317309 phosphatidylinositol-4-phosphate 5-kinase, type I, g... 30 0.54
gi|189181750 human immunodeficiency virus type I enhancer bindin... 28 1.6
gi|116089331 human immunodeficiency virus type I enhancer bindin... 28 1.6
gi|4503385 dopamine receptor D2 isoform long [Homo sapiens] 28 2.0
gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens] 28 2.0
gi|109948265 solute carrier family 35, member A2 isoform c [Homo... 28 2.0
gi|5032211 solute carrier family 35, member A2 isoform a [Homo s... 28 2.0
gi|154937380 hypothetical protein LOC642475 [Homo sapiens] 28 2.0
gi|63054852 terminal deoxynucleotidyltransferase isoform 2 [Homo... 27 2.7
gi|63054850 terminal deoxynucleotidyltransferase isoform 1 [Homo... 27 2.7
gi|148596944 C2 calcium-dependent domain containing 3 [Homo sapi... 27 2.7
gi|148276998 zinc finger protein 628 [Homo sapiens] 27 3.5
gi|215490089 Sin3A-associated protein, 18kDa [Homo sapiens] 26 5.9
gi|134268640 tectorin alpha precursor [Homo sapiens] 26 7.7
>gi|42822891 hypothetical protein LOC84299 [Homo sapiens]
Length = 115
Score = 234 bits (597), Expect = 1e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG 60
MSGEPGQTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG
Sbjct: 1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG 60
Query: 61 GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGETLEKITNSRPPCVIL 115
GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGETLEKITNSRPPCVIL
Sbjct: 61 GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGETLEKITNSRPPCVIL 115
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 23 VRIVVEYCEPCGFEATYLELASAVKEQYPG---IEIESRLGGTGAFEIEINGQLVFSKLE 79
V I V YC + Y+ L ++++Q+P E + TG FE+ +NG+LV SK
Sbjct: 263 VLIRVTYCGLUSYSLRYILLKKSLEQQFPNHLLFEEDRAAQATGEFEVFVNGRLVHSKKR 322
Query: 80 NGGFPYEKDL 89
GF E L
Sbjct: 323 GDGFVNESRL 332
>gi|4506887 selenoprotein W, 1 [Homo sapiens]
Length = 87
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 23 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 79
VR+V YC G+++ YL+L +++++PG ++I E TG FE+ + G+L+ SK +
Sbjct: 5 VRVV--YCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
Query: 80 NGGF 83
G+
Sbjct: 63 GDGY 66
>gi|239755036 PREDICTED: similar to selenoprotein T [Homo sapiens]
Length = 137
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93
IE++ TGAFEI +N V+SKLE+G P + L++ +
Sbjct: 81 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 119
>gi|239749531 PREDICTED: similar to selenoprotein T [Homo sapiens]
Length = 137
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93
IE++ TGAFEI +N V+SKLE+G P + L++ +
Sbjct: 81 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 119
>gi|239743680 PREDICTED: similar to selenoprotein T [Homo sapiens]
Length = 137
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93
IE++ TGAFEI +N V+SKLE+G P + L++ +
Sbjct: 81 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 119
>gi|42789380 selenoprotein T [Homo sapiens]
Length = 195
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 55 IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAI 93
IE++ TGAFEI +N V+SKLE+G P + L++ +
Sbjct: 139 IENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQIL 177
>gi|31317309 phosphatidylinositol-4-phosphate 5-kinase, type I,
gamma [Homo sapiens]
Length = 668
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 2 SGEPGQTSVAPPPEE--------VEPGSGVRIVVEYCEPCGFEATYLELASAVK 47
SG+ G+ PP EE VEP V IVV E G EA+ ++AV+
Sbjct: 556 SGQDGRPQEEPPAEEDLQQITVQVEPACSVEIVVPKEEDAGVEASPAGASAAVE 609
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 4 EPGQTSVAPPPEEVEPGSGVRIVVEYCEPCG---FEATYLELASAVKEQYPGIEIESRLG 60
EP ++ +PP V+PG G+ + PCG + + L L +E P + S+L
Sbjct: 2002 EPQASAPSPPGLHVDPGRGMGAL-----PCGSPRLQLSPLTLCPLGRELAPRAHVLSKLE 2056
Query: 61 GT 62
GT
Sbjct: 2057 GT 2058
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 4 EPGQTSVAPPPEEVEPGSGVRIVVEYCEPCG---FEATYLELASAVKEQYPGIEIESRLG 60
EP ++ +PP V+PG G+ + PCG + + L L +E P + S+L
Sbjct: 2002 EPQASAPSPPGLHVDPGRGMGAL-----PCGSPRLQLSPLTLCPLGRELAPRAHVLSKLE 2056
Query: 61 GT 62
GT
Sbjct: 2057 GT 2058
>gi|4503385 dopamine receptor D2 isoform long [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 80 NGGFPYEKDLIEAIRRASNGETLEKITNSRPP 111
NG FP + +EA RRA E +E ++++ PP
Sbjct: 260 NGSFPVNRRRVEAARRAQELE-MEMLSSTSPP 290
>gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens]
Length = 292
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 40 LELASAVKEQYPGIEIESRLGGTGAFEIEINGQLV--FSKLENGGFPYEKD 88
L++ S V+ QYPG+ I + + A +I +LV S LEN F + K+
Sbjct: 68 LQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKE 118
>gi|109948265 solute carrier family 35, member A2 isoform c [Homo
sapiens]
Length = 393
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 12 PPPEEVEPGSGVRIVVEYCEPCGFEATYLE 41
P P + PG+G+ VV C GF Y E
Sbjct: 192 PRPLDQNPGAGLAAVVASCLSSGFAGVYFE 221
>gi|5032211 solute carrier family 35, member A2 isoform a [Homo
sapiens]
Length = 396
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 12 PPPEEVEPGSGVRIVVEYCEPCGFEATYLE 41
P P + PG+G+ VV C GF Y E
Sbjct: 192 PRPLDQNPGAGLAAVVASCLSSGFAGVYFE 221
>gi|154937380 hypothetical protein LOC642475 [Homo sapiens]
Length = 719
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 7 QTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYP 51
QT P E EPG G + EPC + LE A Q P
Sbjct: 57 QTQALTAPSEAEPGRGATVPEAGSEPCSLNSA-LEPAPEGPHQVP 100
>gi|63054852 terminal deoxynucleotidyltransferase isoform 2 [Homo
sapiens]
Length = 508
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 58 RLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRA 96
R+G ++ + L F++++ GF Y +DL+ + RA
Sbjct: 268 RMGFRTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRA 306
>gi|63054850 terminal deoxynucleotidyltransferase isoform 1 [Homo
sapiens]
Length = 509
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 58 RLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRA 96
R+G ++ + L F++++ GF Y +DL+ + RA
Sbjct: 268 RMGFRTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRA 306
>gi|148596944 C2 calcium-dependent domain containing 3 [Homo
sapiens]
Length = 1963
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 5 PGQTSVAPPPEEVEPGSGVRIVVEYCEPCGFEATYLELASAVKE 48
PG+ S A PP +V VEY P GF + L + + E
Sbjct: 559 PGKKSYAGPPPKVTTAKKRTFFVEYHFPVGFSESGLGKTALITE 602
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 5 PGQTSVAPPPEEVEPG 20
PG S APPP+ EPG
Sbjct: 228 PGTASAAPPPQSREPG 243
>gi|215490089 Sin3A-associated protein, 18kDa [Homo sapiens]
Length = 172
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 36 EATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGF 83
+AT EL S VKE YP E+R GT N +VF+ ++ G+
Sbjct: 82 DATLKELTSLVKEVYP----EARKKGT-----HFNFAIVFTDVKRPGY 120
>gi|134268640 tectorin alpha precursor [Homo sapiens]
Length = 2155
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 56 ESRLGGTGAFEIEINGQLV 74
E ++GG GA E+++NGQ V
Sbjct: 777 EVKIGGIGASEVKLNGQEV 795
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,420,783
Number of Sequences: 37866
Number of extensions: 226754
Number of successful extensions: 508
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 22
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.