Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645969 Sequence: fasta or formatted (137aa) NCBI GI: 239749531
Description:

PREDICTED: similar to selenoprotein T

Not currently referenced in the text

Other entries for this name:
alt mRNA {137aa} PREDICTED: similar to selenoprotein T
alt mRNA {137aa} PREDICTED: similar to selenoprotein T
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          5           1
 C cysteine            1.5          2           1
 D aspartate           3.6          5           1
 E glutamate           5.1          7           1
 F phenylalanine       5.8          8           2
 G glycine             5.8          8           1
 H histidine           3.6          5           2
 I isoleucine          8.0         11           2
 K lysine              3.6          5           1
 L leucine             8.8         12           1
 M methionine          7.3         10           2
 N asparagine          5.1          7           1
 P proline             5.8          8           1
 Q glutamine           6.6          9           2
 R arginine            2.2          3           1
 S serine              8.0         11           1
 T threonine           2.2          3           1
 V valine              7.3         10           1
 W tryptophan          2.9          4           1
 Y tyrosine            2.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to selenoprotein T 
LOC645969             1.000   PREDICTED: similar to selenoprotein T 
LOC645969             1.000   PREDICTED: similar to selenoprotein T 
SELT                  0.954   selenoprotein T 
C17orf37              0.038   hypothetical protein LOC84299 
ZNF347                0.011   zinc finger protein 347 
INSRR                 0.008   insulin receptor-related receptor precursor 
PALLD                 0.008   palladin 
TRIM65                0.008   tripartite motif-containing 65 
SGK493                0.008   protein kinase-like protein SgK493 
DDX60L                0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom...
KCNG4                 0.004   potassium voltage-gated channel, subfamily G, member...
B4GALT7               0.004   xylosylprotein beta 1,4-galactosyltransferase 7 [Homo...
C19orf46              0.004   hypothetical protein LOC163183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press