Guide to the Human Genome
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Name: C17orf37 Sequence: fasta or formatted (115aa) NCBI GI: 42822891
Description:

hypothetical protein LOC84299

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          7           1
 C cysteine            2.6          3           1
 D aspartate           0.9          1           1
 E glutamate          15.7         18           2
 F phenylalanine       3.5          4           1
 G glycine            11.3         13           2
 H histidine           0.0          0           0
 I isoleucine          7.8          9           1
 K lysine              3.5          4           1
 L leucine             7.0          8           1
 M methionine          0.9          1           1
 N asparagine          3.5          4           1
 P proline             8.7         10           3
 Q glutamine           2.6          3           1
 R arginine            4.3          5           2
 S serine              7.0          8           1
 T threonine           4.3          5           1
 V valine              7.0          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84299 
SELV                  0.081   selenoprotein V 
SEPW1                 0.077   selenoprotein W, 1 
LOC645969             0.048   PREDICTED: similar to selenoprotein T 
LOC645969             0.048   PREDICTED: similar to selenoprotein T 
LOC645969             0.048   PREDICTED: similar to selenoprotein T 
SELT                  0.048   selenoprotein T 
PIP5K1C               0.024   phosphatidylinositol-4-phosphate 5-kinase, type I, g...
HIVEP3                0.014   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.014   human immunodeficiency virus type I enhancer bindin...
DRD2                  0.014   dopamine receptor D2 isoform long 
HNMT                  0.014   histamine N-methyltransferase isoform 1 
SLC35A2               0.014   solute carrier family 35, member A2 isoform c [Homo...
SLC35A2               0.014   solute carrier family 35, member A2 isoform a 
C8orf73               0.014   hypothetical protein LOC642475 
DNTT                  0.010   terminal deoxynucleotidyltransferase isoform 2 [Homo...
DNTT                  0.010   terminal deoxynucleotidyltransferase isoform 1 [Homo...
C2CD3                 0.010   C2 calcium-dependent domain containing 3 
ZNF628                0.010   zinc finger protein 628 
SAP18                 0.005   Sin3A-associated protein, 18kDa 
TECTA                 0.005   tectorin alpha precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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