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Search of human proteins with 41327749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41327749 anaphase-promoting complex subunit 4 [Homo sapiens]
(808 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41327749 anaphase-promoting complex subunit 4 [Homo sapiens] 1607 0.0
gi|21618338 signal transducer and activator of transcription 3 i... 35 0.28
gi|47458820 signal transducer and activator of transcription 3 i... 35 0.36
gi|21618340 signal transducer and activator of transcription 3 i... 35 0.36
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 33 1.1
gi|118600967 shroom family member 4 [Homo sapiens] 33 1.4
gi|38569484 kinesin family member 21A [Homo sapiens] 33 1.4
gi|46409657 WD repeat domain 56 [Homo sapiens] 33 1.4
gi|4507943 exportin 1 [Homo sapiens] 32 1.8
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 32 1.8
gi|19913367 transducin beta-like 1Y [Homo sapiens] 32 1.8
gi|19913365 transducin beta-like 1Y [Homo sapiens] 32 1.8
gi|15150805 transducin beta-like 1Y [Homo sapiens] 32 1.8
gi|11136628 eukaryotic translation elongation factor 1 beta 2 [H... 32 1.8
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 32 1.8
gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Ho... 32 1.8
gi|83376130 eukaryotic translation elongation factor 1 beta 2 [H... 32 1.8
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 32 1.8
gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens] 32 2.4
gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens] 32 2.4
gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens] 32 2.4
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 32 2.4
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 32 2.4
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 32 3.1
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 32 3.1
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 32 3.1
gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom... 32 3.1
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 32 3.1
gi|109948292 hypothetical protein LOC57614 [Homo sapiens] 32 3.1
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 31 4.0
>gi|41327749 anaphase-promoting complex subunit 4 [Homo sapiens]
Length = 808
Score = 1607 bits (4162), Expect = 0.0
Identities = 808/808 (100%), Positives = 808/808 (100%)
Query: 1 MLRFPTCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPP 60
MLRFPTCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPP
Sbjct: 1 MLRFPTCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPP 60
Query: 61 NENTGKEVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTV 120
NENTGKEVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTV
Sbjct: 61 NENTGKEVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTV 120
Query: 121 ESSVLTSFYNAEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGG 180
ESSVLTSFYNAEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGG
Sbjct: 121 ESSVLTSFYNAEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGG 180
Query: 181 SSGFIELYAYGMFKIARVTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYFQLETNL 240
SSGFIELYAYGMFKIARVTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYFQLETNL
Sbjct: 181 SSGFIELYAYGMFKIARVTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYFQLETNL 240
Query: 241 LYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKNTTTSV 300
LYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKNTTTSV
Sbjct: 241 LYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLTKFVQEKNTTTSV 300
Query: 301 QDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLL 360
QDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLL
Sbjct: 301 QDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLL 360
Query: 361 YHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKAFFRW 420
YHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKAFFRW
Sbjct: 361 YHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKAFFRW 420
Query: 421 LYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLK 480
LYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLK
Sbjct: 421 LYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQYLK 480
Query: 481 DEDDDLVSPPNTEGNQWYDFLQNSSHLKESPLLFPYYPRKSLHFVKRRMENIIDQCLQKP 540
DEDDDLVSPPNTEGNQWYDFLQNSSHLKESPLLFPYYPRKSLHFVKRRMENIIDQCLQKP
Sbjct: 481 DEDDDLVSPPNTEGNQWYDFLQNSSHLKESPLLFPYYPRKSLHFVKRRMENIIDQCLQKP 540
Query: 541 ADVIGKSMNQAICIPLYRDTRSEDSTRRLFKFPFLWNNKTSNLHYLLFTILEDSLYKMCI 600
ADVIGKSMNQAICIPLYRDTRSEDSTRRLFKFPFLWNNKTSNLHYLLFTILEDSLYKMCI
Sbjct: 541 ADVIGKSMNQAICIPLYRDTRSEDSTRRLFKFPFLWNNKTSNLHYLLFTILEDSLYKMCI 600
Query: 601 LRRHTDISQSVSNGLIAIKFGSFTYATTEKVRRSIYSCLDAQFYDDETVTVVLKDTVGRE 660
LRRHTDISQSVSNGLIAIKFGSFTYATTEKVRRSIYSCLDAQFYDDETVTVVLKDTVGRE
Sbjct: 601 LRRHTDISQSVSNGLIAIKFGSFTYATTEKVRRSIYSCLDAQFYDDETVTVVLKDTVGRE 660
Query: 661 GRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKAQ 720
GRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKAQ
Sbjct: 661 GRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKAQ 720
Query: 721 YVAGNGFRKVSCVLSSNLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESE 780
YVAGNGFRKVSCVLSSNLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESE
Sbjct: 721 YVAGNGFRKVSCVLSSNLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESE 780
Query: 781 AENQQAGAAALAPEIVIKVEKLDPELDS 808
AENQQAGAAALAPEIVIKVEKLDPELDS
Sbjct: 781 AENQQAGAAALAPEIVIKVEKLDPELDS 808
>gi|21618338 signal transducer and activator of transcription 3
isoform 2 [Homo sapiens]
Length = 769
Score = 35.0 bits (79), Expect = 0.28
Identities = 94/424 (22%), Positives = 147/424 (34%), Gaps = 79/424 (18%)
Query: 138 LLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIAR 197
LL K P L NY K+ +++S ++ L G + NIL +E G
Sbjct: 351 LLVKFPEL--NYQLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGS----- 403
Query: 198 VTGIAGTCLALCLSSDLKSLSVVTEVSTNGAS---EVSYFQLETNLLYSFLPEVTRMARK 254
LS++ K L++ + NG + S E L +F EV K
Sbjct: 404 ------------LSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGLK 451
Query: 255 FTHISALLQYINLSLTC-MCEAWEEILMQMDSRLTKFVQEKNTTTS----VQDEFMHLLL 309
+ L + +S C M AW IL + LT + N T D+ +L
Sbjct: 452 IDLETHSLPVVVISNICQMPNAWASILWY--NMLTNNPKNVNFFTKPPIGTWDQVAEVLS 509
Query: 310 WGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSI--QKLVISHLQSGSESLLYHLSELK 367
W +S + L + QLT K LG + S I K ++ S L +
Sbjct: 510 WQFSSTTKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGKGFSFWVWLDNII 569
Query: 368 G------MASWKQKYEPLGLDAAGIEEAITAV---GSFILKANELLQVIDSSMKNFKAFF 418
+A W + Y +G + E AI + G+F+L+ +E S K F
Sbjct: 570 DLVKKYILALWNEGY-IMGFISKERERAILSTKPPGTFLLRFSE-------SSKEGGVTF 621
Query: 419 RWLYVAMLRMTEDHVLPELNKMTQKDITFVAEFLTEHFNEAPDLYNRKGKYFNVERVGQY 478
W+ + T+ + K +++F AE + +G
Sbjct: 622 TWVEKDISGKTQIQSVEPYTKQQLNNMSF-AEII----------------------MGYK 658
Query: 479 LKDEDDDLVSP--------PNTEGNQWYDFLQNSSHLKESPLLFPYYPRKSLHFVKRRME 530
+ D + LVSP P E Y ++ H + P PY K +
Sbjct: 659 IMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPGAAPYLKTKFICVTPTTCS 718
Query: 531 NIID 534
N ID
Sbjct: 719 NTID 722
>gi|47458820 signal transducer and activator of transcription 3
isoform 3 [Homo sapiens]
Length = 722
Score = 34.7 bits (78), Expect = 0.36
Identities = 77/332 (23%), Positives = 122/332 (36%), Gaps = 53/332 (15%)
Query: 138 LLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIAR 197
LL K P L NY K+ +++S ++ L G + NIL +E G
Sbjct: 351 LLVKFPEL--NYQLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGS----- 403
Query: 198 VTGIAGTCLALCLSSDLKSLSVVTEVSTNGAS---EVSYFQLETNLLYSFLPEVTRMARK 254
LS++ K L++ + NG + S E L +F EV K
Sbjct: 404 ------------LSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGLK 451
Query: 255 FTHISALLQYINLSLTC-MCEAWEEILMQMDSRLTKFVQEKNTTTS----VQDEFMHLLL 309
+ L + +S C M AW IL + LT + N T D+ +L
Sbjct: 452 IDLETHSLPVVVISNICQMPNAWASILWY--NMLTNNPKNVNFFTKPPIGTWDQVAEVLS 509
Query: 310 WGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSI--QKLVISHLQSGSESLLYHLSELK 367
W +S + L + QLT K LG + S I K ++ S L +
Sbjct: 510 WQFSSTTKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGKGFSFWVWLDNII 569
Query: 368 G------MASWKQKYEPLGLDAAGIEEAITAV---GSFILKANELLQVIDSSMKNFKAFF 418
+A W + Y +G + E AI + G+F+L+ +E S K F
Sbjct: 570 DLVKKYILALWNEGY-IMGFISKERERAILSTKPPGTFLLRFSE-------SSKEGGVTF 621
Query: 419 RWLY-----VAMLRMTEDHVLPELNKMTQKDI 445
W+ ++ E + +LN M+ +I
Sbjct: 622 TWVEKDISGKTQIQSVEPYTKQQLNNMSFAEI 653
>gi|21618340 signal transducer and activator of transcription 3
isoform 1 [Homo sapiens]
Length = 770
Score = 34.7 bits (78), Expect = 0.36
Identities = 77/332 (23%), Positives = 122/332 (36%), Gaps = 53/332 (15%)
Query: 138 LLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIAR 197
LL K P L NY K+ +++S ++ L G + NIL +E G
Sbjct: 351 LLVKFPEL--NYQLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGS----- 403
Query: 198 VTGIAGTCLALCLSSDLKSLSVVTEVSTNGAS---EVSYFQLETNLLYSFLPEVTRMARK 254
LS++ K L++ + NG + S E L +F EV K
Sbjct: 404 ------------LSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGLK 451
Query: 255 FTHISALLQYINLSLTC-MCEAWEEILMQMDSRLTKFVQEKNTTTS----VQDEFMHLLL 309
+ L + +S C M AW IL + LT + N T D+ +L
Sbjct: 452 IDLETHSLPVVVISNICQMPNAWASILWY--NMLTNNPKNVNFFTKPPIGTWDQVAEVLS 509
Query: 310 WGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSI--QKLVISHLQSGSESLLYHLSELK 367
W +S + L + QLT K LG + S I K ++ S L +
Sbjct: 510 WQFSSTTKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGKGFSFWVWLDNII 569
Query: 368 G------MASWKQKYEPLGLDAAGIEEAITAV---GSFILKANELLQVIDSSMKNFKAFF 418
+A W + Y +G + E AI + G+F+L+ +E S K F
Sbjct: 570 DLVKKYILALWNEGY-IMGFISKERERAILSTKPPGTFLLRFSE-------SSKEGGVTF 621
Query: 419 RWLY-----VAMLRMTEDHVLPELNKMTQKDI 445
W+ ++ E + +LN M+ +I
Sbjct: 622 TWVEKDISGKTQIQSVEPYTKQQLNNMSFAEI 653
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 749 DDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIV 796
++E E DE +EE+E + + +EE E E E ++A AA E++
Sbjct: 735 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVL 782
Score = 30.0 bits (66), Expect = 9.0
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 749 DDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALA 792
++E E ++ +EEE+ + + +EE E E E ++ AAA+A
Sbjct: 734 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVA 777
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 32.7 bits (73), Expect = 1.4
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 749 DDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIK 798
++E E +E +EEEE + + +EE L ++ +G+ AL PE V++
Sbjct: 1132 EEEEEEEEEEEEEEEEEEEEAEEEEEELPPQYFSSETSGSCALNPEEVLE 1181
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 745 EMDIDDEWELDESSDEEEEASNKPVKI-----KEEVLSES-EAENQQAGAAALAPEIVIK 798
E+++++ E+ + DEEEE + I +E SES E N QA A + EI IK
Sbjct: 585 ELEVEESQEVSDHEDEEEEEEEEEDDIDGGESSDESDSESDEKANYQADLANITCEIAIK 644
Query: 799 VEKLDPELDS 808
+KL EL++
Sbjct: 645 -QKLIDELEN 653
>gi|46409657 WD repeat domain 56 [Homo sapiens]
Length = 777
Score = 32.7 bits (73), Expect = 1.4
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 17/107 (15%)
Query: 9 PSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRL-ASFHR-VWSFPPNENTGK 66
P+ +V+ K I+ + W+ DLI +AGE +++ S+ R +++ P+E+
Sbjct: 177 PNAKVLQWKAHDGIILKVDWNSVNDLIL---SAGEDCKYKVWDSYGRPLYNSQPHEHP-- 231
Query: 67 EVTCLAWRPDGKLLAFALADTKKIVLCD-------VEKPESLHSFSV 106
+T +AW PDG+L FA+ + LCD +EKP + F++
Sbjct: 232 -ITSVAWAPDGEL--FAVGSFHTLRLCDKTGWSYALEKPNTGSIFNI 275
>gi|4507943 exportin 1 [Homo sapiens]
Length = 1071
Score = 32.3 bits (72), Expect = 1.8
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 39/177 (22%)
Query: 7 CFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTGK 66
CFP+F + Q + ++W+ K + +A+T ++L L +N +
Sbjct: 859 CFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL------------QNVAQ 906
Query: 67 EVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLT 126
E A + CD+ + H FSV S H +T+ +S+L
Sbjct: 907 EEA-------------AAQSFYQTYFCDILQ----HIFSVVTDTS--HTAGLTMHASILA 947
Query: 127 SFYNAEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKL----LGDVRLNILVLG 179
+N +E + P P N ++IF +E ++K L D ++ + V G
Sbjct: 948 YMFNLVEEGKISTSLNPGNPVN----NQIFLQEYVANLLKSAFPHLQDAQVKLFVTG 1000
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 32.3 bits (72), Expect = 1.8
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 750 DEWELDESSDEE--EEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKV--EKLDPE 805
+E +E+++EE EEA+ +P K EE +E E+ + A A APE V K EK D E
Sbjct: 210 EEKPTEEAAEEELAEEAAEEPAK--EEPAAEEESAEEPATEEAAAPEEVTKYQHEKWDEE 267
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 29/85 (34%)
Query: 22 EIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTG---------------- 65
E+ W+P DL LA+ +G+ S R+W+ N N G
Sbjct: 181 EVFICAWNPVSDL--LASGSGD-------STARIWNLNENSNGGSTQLVLRHCIREGGHD 231
Query: 66 ----KEVTCLAWRPDGKLLAFALAD 86
K+VT L W DG LLA D
Sbjct: 232 VPSNKDVTSLDWNSDGTLLAMGSYD 256
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 29/85 (34%)
Query: 22 EIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTG---------------- 65
E+ W+P DL LA+ +G+ S R+W+ N N G
Sbjct: 181 EVFICAWNPVSDL--LASGSGD-------STARIWNLNENSNGGSTQLVLRHCIREGGHD 231
Query: 66 ----KEVTCLAWRPDGKLLAFALAD 86
K+VT L W DG LLA D
Sbjct: 232 VPSNKDVTSLDWNSDGTLLAMGSYD 256
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 29/85 (34%)
Query: 22 EIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTG---------------- 65
E+ W+P DL LA+ +G+ S R+W+ N N G
Sbjct: 181 EVFICAWNPVSDL--LASGSGD-------STARIWNLNENSNGGSTQLVLRHCIREGGHD 231
Query: 66 ----KEVTCLAWRPDGKLLAFALAD 86
K+VT L W DG LLA D
Sbjct: 232 VPSNKDVTSLDWNSDGTLLAMGSYD 256
>gi|11136628 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 747 DIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPEL 806
D D+ ++D ++EE S + +++EE L++ E++ + A I++ V+ D E
Sbjct: 94 DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDET 153
Query: 807 D 807
D
Sbjct: 154 D 154
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 32.3 bits (72), Expect = 1.8
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 344 IQKLVISHLQSGSESLLYHLSELKG----MASWKQKYEPLGLDAAGIEEAITAVGSFILK 399
I+ L+ + + + L+ LSELK +A+W QK GLD A G+F +
Sbjct: 874 IRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSFGLD---------ATGTFFSR 924
Query: 400 ANELLQVIDSSMKNFKAFFRWLYVAMLRMTEDHVLPELNK-MTQKDITFVAEFLTEHFNE 458
L+++D S+ F + Y L E L ++ + K+ + L EH ++
Sbjct: 925 YGASLKLLDFSIMTF--LWNEKYGHKLDSIEGKQLDYFSEPASLKEARCLIWLLEEHRDK 982
Query: 459 APDLYNRKGKYFNV 472
P L++ ++F++
Sbjct: 983 FPALHSALDEFFDI 996
>gi|4503477 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 747 DIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPEL 806
D D+ ++D ++EE S + +++EE L++ E++ + A I++ V+ D E
Sbjct: 94 DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDET 153
Query: 807 D 807
D
Sbjct: 154 D 154
>gi|83376130 eukaryotic translation elongation factor 1 beta 2 [Homo
sapiens]
Length = 225
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 747 DIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPEL 806
D D+ ++D ++EE S + +++EE L++ E++ + A I++ V+ D E
Sbjct: 94 DSKDDDDIDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDET 153
Query: 807 D 807
D
Sbjct: 154 D 154
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 32.3 bits (72), Expect = 1.8
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 344 IQKLVISHLQSGSESLLYHLSELKG----MASWKQKYEPLGLDAAGIEEAITAVGSFILK 399
I+ L+ + + + L+ LSELK +A+W QK GLD A G+F +
Sbjct: 874 IRHLIQENNRVKTRIFLHVLSELKEVEPKLAAWIQKLNSFGLD---------ATGTFFSR 924
Query: 400 ANELLQVIDSSMKNFKAFFRWLYVAMLRMTEDHVLPELNK-MTQKDITFVAEFLTEHFNE 458
L+++D S+ F + Y L E L ++ + K+ + L EH ++
Sbjct: 925 YGASLKLLDFSIMTF--LWNEKYGHKLDSIEGKQLDYFSEPASLKEARCLIWLLEEHRDK 982
Query: 459 APDLYNRKGKYFNV 472
P L++ ++F++
Sbjct: 983 FPALHSALDEFFDI 996
>gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 32.0 bits (71), Expect = 2.4
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 67 EVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLT 126
EVTCLA+ P ++LA D + L D KP + +F + E+ +L
Sbjct: 175 EVTCLAFHPTEQILASGSRD-YTLKLFDYSKPSAKRAF------------KYIQEAEMLR 221
Query: 127 SF-YNAEDESNLLLPKLPTLPKNYSNTSKIF-----SEENSDEIIKLLGDVRLNILVLGG 180
S ++ + L+ + PTL NT + F ++++D I + + N+ V G
Sbjct: 222 SISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGS 281
Query: 181 SSGFIELY 188
G I+L+
Sbjct: 282 KDGCIKLW 289
>gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 32.0 bits (71), Expect = 2.4
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 67 EVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLT 126
EVTCLA+ P ++LA D + L D KP + +F + E+ +L
Sbjct: 175 EVTCLAFHPTEQILASGSRD-YTLKLFDYSKPSAKRAF------------KYIQEAEMLR 221
Query: 127 SF-YNAEDESNLLLPKLPTLPKNYSNTSKIF-----SEENSDEIIKLLGDVRLNILVLGG 180
S ++ + L+ + PTL NT + F ++++D I + + N+ V G
Sbjct: 222 SISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGS 281
Query: 181 SSGFIELY 188
G I+L+
Sbjct: 282 KDGCIKLW 289
>gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 32.0 bits (71), Expect = 2.4
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 67 EVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLT 126
EVTCLA+ P ++LA D + L D KP + +F + E+ +L
Sbjct: 175 EVTCLAFHPTEQILASGSRD-YTLKLFDYSKPSAKRAF------------KYIQEAEMLR 221
Query: 127 SF-YNAEDESNLLLPKLPTLPKNYSNTSKIF-----SEENSDEIIKLLGDVRLNILVLGG 180
S ++ + L+ + PTL NT + F ++++D I + + N+ V G
Sbjct: 222 SISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGS 281
Query: 181 SSGFIELY 188
G I+L+
Sbjct: 282 KDGCIKLW 289
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 745 EMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDP 804
E ++E E DE +EEEE + + +EE E E EN Q+ L + +++ P
Sbjct: 1067 ESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTKPQSVAIKRKRP 1126
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 32.0 bits (71), Expect = 2.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 752 WELDESSDEEEEASNKPVKIKEEVL----SESEAENQQAGAAAL 791
W L+E DEE EA P + +VL +E AE+Q AG A+
Sbjct: 398 WVLEEEGDEEREAEVSPFPKQPQVLGTERTEEAAESQTAGREAV 441
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 31.6 bits (70), Expect = 3.1
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 749 DDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPELD 807
D E EL+ SDEEEE + EE SE E EN A+ + K+ K LD
Sbjct: 554 DLEEELESFSDEEEEEQEQQRDDAEESSSEPEEENVGNDTKAVIKALDEKIAKYQKFLD 612
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 31.6 bits (70), Expect = 3.1
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 678 EDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKA-QYVAGNGFRKVSCVLSS 736
ED + Q R Q S+I + E+ LLE ++A + ++ G K+ C L +
Sbjct: 1621 EDQEQLQEEIKRLNRQLAQRSSIDNENLVSERERVLLEELEALKQLSLAGREKLCCELRN 1680
Query: 737 NLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIV 796
+ + +++ E++E + +E+E KP + E+LS Q+A L +I+
Sbjct: 1681 SSTQT---QNGNENQGEVEEQTFKEKELDRKPEDVPPEILSNERYALQKANNRLL--KIL 1735
Query: 797 IKVEK 801
++V K
Sbjct: 1736 LEVVK 1740
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 31.6 bits (70), Expect = 3.1
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 678 EDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKA-QYVAGNGFRKVSCVLSS 736
ED + Q R Q S+I + E+ LLE ++A + ++ G K+ C L +
Sbjct: 1621 EDQEQLQEEIKRLNRQLAQRSSIDNENLVSERERVLLEELEALKQLSLAGREKLCCELRN 1680
Query: 737 NLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIV 796
+ + +++ E++E + +E+E KP + E+LS Q+A L +I+
Sbjct: 1681 SSTQT---QNGNENQGEVEEQTFKEKELDRKPEDVPPEILSNERYALQKANNRLL--KIL 1735
Query: 797 IKVEK 801
++V K
Sbjct: 1736 LEVVK 1740
>gi|7657381 PRP19/PSO4 pre-mRNA processing factor 19 homolog [Homo
sapiens]
Length = 504
Score = 31.6 bits (70), Expect = 3.1
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 54 RVWSFPPNENTGKEVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSF-SVEAPVSC 112
RV + +E +G +TC + PDG + D+ +I + D+++ ++ +F P++
Sbjct: 339 RVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDS-QIKIWDLKERTNVANFPGHSGPITS 397
Query: 113 MHWMEVTVESSVLTSFY--NAEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGD 170
+ + E +Y A D+S++ L L L KN+ K +N+ E+ L+ D
Sbjct: 398 IAFSE--------NGYYLATAADDSSVKLWDLRKL-KNF----KTLQLDNNFEVKSLIFD 444
Query: 171 VRLNILVLGGSSGFIELY 188
L LGG+ +++Y
Sbjct: 445 QSGTYLALGGTD--VQIY 460
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 31.6 bits (70), Expect = 3.1
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 737 NLRHVRVFEMDIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQ 785
N+ V D +DE E +E +EEEEA + + +EE E E E ++
Sbjct: 349 NMAKVLASLSDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEE 397
>gi|109948292 hypothetical protein LOC57614 [Homo sapiens]
Length = 1216
Score = 31.6 bits (70), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 145 LPKNYSNTSKIFSEENSDEIIKLLGDVRLNI 175
L NY TS FS+EN D+ +L DV LNI
Sbjct: 268 LKNNYKLTSITFSDENDDQDFELWDDVGLNI 298
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 31.2 bits (69), Expect = 4.0
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 749 DDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPELDS 808
++E E++E EEE+ ++ + KEE E E E ++ G ++ EK++ E+D+
Sbjct: 125 EEEEEVEEEEKEEEKEEDEEEEEKEEEKEEDEEEEEKEGKK-------MEEEKVEEEIDT 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,907,550
Number of Sequences: 37866
Number of extensions: 1247035
Number of successful extensions: 5346
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 5174
Number of HSP's gapped (non-prelim): 122
length of query: 808
length of database: 18,247,518
effective HSP length: 110
effective length of query: 698
effective length of database: 14,082,258
effective search space: 9829416084
effective search space used: 9829416084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.