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Search of human proteins with 39932583
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo
sapiens]
(1164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens] 2370 0.0
gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens] 1900 0.0
gi|56090620 NFKB activating protein-like [Homo sapiens] 52 3e-06
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 49 2e-05
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 49 2e-05
gi|21361684 G patch domain containing 1 [Homo sapiens] 49 2e-05
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 47 1e-04
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 47 1e-04
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 46 2e-04
gi|168229156 NFKB activating protein [Homo sapiens] 46 2e-04
gi|27883882 P18SRP protein [Homo sapiens] 46 2e-04
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 45 4e-04
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 45 5e-04
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens] 45 5e-04
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 44 7e-04
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 44 9e-04
gi|151301228 formin binding protein 3 [Homo sapiens] 44 9e-04
gi|52426743 cisplatin resistance-associated overexpressed protei... 44 9e-04
gi|19923485 cisplatin resistance-associated overexpressed protei... 44 9e-04
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 43 0.002
gi|13236559 hypothetical protein LOC79169 [Homo sapiens] 43 0.002
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 42 0.003
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 42 0.003
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 42 0.003
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 42 0.003
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 42 0.003
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens] 42 0.003
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 42 0.004
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 42 0.004
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 42 0.004
>gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens]
Length = 1164
Score = 2370 bits (6143), Expect = 0.0
Identities = 1164/1164 (100%), Positives = 1164/1164 (100%)
Query: 1 MALFPAFAGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSH 60
MALFPAFAGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSH
Sbjct: 1 MALFPAFAGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSH 60
Query: 61 LKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDK 120
LKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDK
Sbjct: 61 LKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDK 120
Query: 121 PSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLY 180
PSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLY
Sbjct: 121 PSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLY 180
Query: 181 RGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAIS 240
RGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAIS
Sbjct: 181 RGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAIS 240
Query: 241 SKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQP 300
SKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQP
Sbjct: 241 SKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQP 300
Query: 301 DSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLK 360
DSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLK
Sbjct: 301 DSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLK 360
Query: 361 LILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQK 420
LILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQK
Sbjct: 361 LILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQK 420
Query: 421 YLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFL 480
YLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFL
Sbjct: 421 YLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFL 480
Query: 481 RQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKA 540
RQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKA
Sbjct: 481 RQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKA 540
Query: 541 WMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKT 600
WMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKT
Sbjct: 541 WMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKT 600
Query: 601 KKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLA 660
KKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLA
Sbjct: 601 KKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLA 660
Query: 661 MDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEEFIRNVFHLV 720
MDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEEFIRNVFHLV
Sbjct: 661 MDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEEFIRNVFHLV 720
Query: 721 MPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNF 780
MPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNF
Sbjct: 721 MPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNF 780
Query: 781 CLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRR 840
CLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRR
Sbjct: 781 CLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRR 840
Query: 841 AATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSNPAPTDSC 900
AATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSNPAPTDSC
Sbjct: 841 AATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSNPAPTDSC 900
Query: 901 SRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASSQSWTSVLEA 960
SRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASSQSWTSVLEA
Sbjct: 901 SRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASSQSWTSVLEA 960
Query: 961 ITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRF 1020
ITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRF
Sbjct: 961 ITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRF 1020
Query: 1021 FDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAM 1080
FDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAM
Sbjct: 1021 FDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAM 1080
Query: 1081 RSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEI 1140
RSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEI
Sbjct: 1081 RSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEI 1140
Query: 1141 LDLMTEKELRVRLPLEELELLLED 1164
LDLMTEKELRVRLPLEELELLLED
Sbjct: 1141 LDLMTEKELRVRLPLEELELLLED 1164
>gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens]
Length = 933
Score = 1900 bits (4923), Expect = 0.0
Identities = 933/933 (100%), Positives = 933/933 (100%)
Query: 232 MNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQ 291
MNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQ
Sbjct: 1 MNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQ 60
Query: 292 ESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGE 351
ESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGE
Sbjct: 61 ESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGE 120
Query: 352 QEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLH 411
QEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLH
Sbjct: 121 QEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLH 180
Query: 412 PNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFA 471
PNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFA
Sbjct: 181 PNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFA 240
Query: 472 LFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAG 531
LFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAG
Sbjct: 241 LFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAG 300
Query: 532 EKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRH 591
EKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRH
Sbjct: 301 EKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRH 360
Query: 592 WRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFT 651
WRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFT
Sbjct: 361 WRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFT 420
Query: 652 PPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEE 711
PPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEE
Sbjct: 421 PPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEE 480
Query: 712 FIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLL 771
FIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLL
Sbjct: 481 FIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLL 540
Query: 772 KEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELE 831
KEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELE
Sbjct: 541 KEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELE 600
Query: 832 VELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCV 891
VELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCV
Sbjct: 601 VELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCV 660
Query: 892 SNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASS 951
SNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASS
Sbjct: 661 SNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASS 720
Query: 952 QSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKS 1011
QSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKS
Sbjct: 721 QSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKS 780
Query: 1012 HSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHR 1071
HSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHR
Sbjct: 781 HSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHR 840
Query: 1072 IQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVE 1131
IQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVE
Sbjct: 841 IQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVE 900
Query: 1132 YFPDEMQEILDLMTEKELRVRLPLEELELLLED 1164
YFPDEMQEILDLMTEKELRVRLPLEELELLLED
Sbjct: 901 YFPDEMQEILDLMTEKELRVRLPLEELELLLED 933
>gi|56090620 NFKB activating protein-like [Homo sapiens]
Length = 402
Score = 52.0 bits (123), Expect = 3e-06
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 59 SHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEK 118
+H KS SSD + + K+TSR + K KKRK++ K+ RK+ S S+ SE+DT+S+
Sbjct: 161 THQKSSSSDSNSEEHRKKKTSRSRNK---KKRKNKSSKRKHRKYSDSDSN-SESDTNSDS 216
Query: 119 DKPSRGVGGSKKESEEPNQ 137
D + V KK+ ++ ++
Sbjct: 217 DDDKKRVKAKKKKKKKKHK 235
Score = 46.6 bits (109), Expect = 1e-04
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 58 RSHLKSESSDESDTNK-----KLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSET 112
R + S+S+ ESDTN K + ++KKKK+KK K K + +KKTK++ SS SE
Sbjct: 199 RKYSDSDSNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKKTKKESSDSSCKDSEE 258
Query: 113 D 113
D
Sbjct: 259 D 259
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 49.3 bits (116), Expect = 2e-05
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKK-RKHQHHKKTKRKHGPSSSSRSETDTD 115
TRSH S SS ES +KK KKKK++KKK +KH+ HKK K KH + ++
Sbjct: 1677 TRSHSSSASSAESQDSKK------KKKKKEKKKHKKHKKHKKHK-KHAGTEVELEKSQKH 1729
Query: 116 SEKDKPSRGVGGSKKESEEPNQ 137
K K S+ +KE E+ +Q
Sbjct: 1730 KHKKKKSKKNKDKEKEKEKDDQ 1751
Score = 47.4 bits (111), Expect = 8e-05
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 34 GSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQ 93
G+ SLSQ ++ A S+ TR+ SS++ T + K+T ++ KR+ +
Sbjct: 1404 GNFKSLSQSSKEA--RTSDKHDSTRA-----SSNKDFTPNRDKKTDYDTREYSSSKRRDE 1456
Query: 94 HHKKTKRKHGPS----SSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRF 149
++ T+RK PS S+S + E+D P +G G SKK + P++ H
Sbjct: 1457 KNELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRKP-----HDH 1511
Query: 150 VWLEDIQAVTGETFRTDKKP 169
D + ET DK P
Sbjct: 1512 KATYDTKRPNEETKSVDKNP 1531
Score = 39.7 bits (91), Expect = 0.017
Identities = 58/291 (19%), Positives = 114/291 (39%), Gaps = 29/291 (9%)
Query: 52 EGLPLTRSHLKSES-SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRS 110
+ P+ + +ES + +S + K ++ + K K K KRK+ +K+++ +
Sbjct: 948 DATPVRDEPMDAESITFKSVSEKDKRERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKGP 1007
Query: 111 ETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPD 170
+ D E+++ R KK EE + +N + + + + +TG + K
Sbjct: 1008 QEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSS-----QKDEKITGTPRKAHSKSA 1062
Query: 171 PANWEYKSL--------YRGDIARYK--RKGDSCLGINPKKQCISWEGTSTEKKHSRKQV 220
+ E K + Y D+ K K + N K + + +G ++K K V
Sbjct: 1063 KEHQETKPVKEEKVKKDYSKDVKSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGV 1122
Query: 221 ERYFTKKSVGLMNIDGVAI----SSKTEPPSSEPISFIPVKD-LEDAAPVTTWLNPLGIY 275
++ F S+ + ++ I + P +E + P KD + +AP I
Sbjct: 1123 DKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTPEKDKISLSAPAKK------IK 1176
Query: 276 DQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQ 326
T G +K+P + +S S+ K K E+ +VR T+
Sbjct: 1177 LNRETGKKIGSTENISNTKEPSEKLESTSS--KVKQEKVKGKVRRKVTGTE 1225
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 49.3 bits (116), Expect = 2e-05
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKK-RKHQHHKKTKRKHGPSSSSRSETDTD 115
TRSH S SS ES +KK KKKK++KKK +KH+ HKK K KH + ++
Sbjct: 1711 TRSHSSSASSAESQDSKK------KKKKKEKKKHKKHKKHKKHK-KHAGTEVELEKSQKH 1763
Query: 116 SEKDKPSRGVGGSKKESEEPNQ 137
K K S+ +KE E+ +Q
Sbjct: 1764 KHKKKKSKKNKDKEKEKEKDDQ 1785
Score = 47.4 bits (111), Expect = 8e-05
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 34 GSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQ 93
G+ SLSQ ++ A S+ TR+ SS++ T + K+T ++ KR+ +
Sbjct: 1438 GNFKSLSQSSKEA--RTSDKHDSTRA-----SSNKDFTPNRDKKTDYDTREYSSSKRRDE 1490
Query: 94 HHKKTKRKHGPS----SSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRF 149
++ T+RK PS S+S + E+D P +G G SKK + P++ H
Sbjct: 1491 KNELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRKP-----HDH 1545
Query: 150 VWLEDIQAVTGETFRTDKKP 169
D + ET DK P
Sbjct: 1546 KATYDTKRPNEETKSVDKNP 1565
Score = 39.7 bits (91), Expect = 0.017
Identities = 58/291 (19%), Positives = 114/291 (39%), Gaps = 29/291 (9%)
Query: 52 EGLPLTRSHLKSES-SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRS 110
+ P+ + +ES + +S + K ++ + K K K KRK+ +K+++ +
Sbjct: 982 DATPVRDEPMDAESITFKSVSEKDKRERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKGP 1041
Query: 111 ETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPD 170
+ D E+++ R KK EE + +N + + + + +TG + K
Sbjct: 1042 QEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSS-----QKDEKITGTPRKAHSKSA 1096
Query: 171 PANWEYKSL--------YRGDIARYK--RKGDSCLGINPKKQCISWEGTSTEKKHSRKQV 220
+ E K + Y D+ K K + N K + + +G ++K K V
Sbjct: 1097 KEHQETKPVKEEKVKKDYSKDVKSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGV 1156
Query: 221 ERYFTKKSVGLMNIDGVAI----SSKTEPPSSEPISFIPVKD-LEDAAPVTTWLNPLGIY 275
++ F S+ + ++ I + P +E + P KD + +AP I
Sbjct: 1157 DKDFESSSMKISKLEVTEIVKPSPKRKMEPDTEKMDRTPEKDKISLSAPAKK------IK 1210
Query: 276 DQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQ 326
T G +K+P + +S S+ K K E+ +VR T+
Sbjct: 1211 LNRETGKKIGSTENISNTKEPSEKLESTSS--KVKQEKVKGKVRRKVTGTE 1259
>gi|21361684 G patch domain containing 1 [Homo sapiens]
Length = 931
Score = 49.3 bits (116), Expect = 2e-05
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 29 PSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNK---KLKQTSRKKKKE 85
PSF + + + ++ E P P R L+ ++ NK K K+ R+KK++
Sbjct: 815 PSFPIQKM-QIDEREEFGPRLPPVFCPNARQTLEVPQKEKHKKNKDKHKAKKEHRRKKEK 873
Query: 86 KKKKRKHQHHKKTK-RKHGPSSSSRSETDTDSEKDKPSRGV 125
KKK RKH+H K K +K SSSS S +DS+ D+ + V
Sbjct: 874 KKKHRKHKHKGKQKNKKPEKSSSSESSDSSDSQSDEETADV 914
Score = 35.8 bits (81), Expect = 0.24
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 9 GLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESS-- 66
G SE GS E ++ S+ +G +S++ AP P+ + +
Sbjct: 774 GDSEDDQAGSG--EANFQSSQDTDLGETSSVAHALVPAPQEPPPSFPIQKMQIDEREEFG 831
Query: 67 ---------DESDTNKKLKQTSRKKKKEKKK-KRKHQHHKKTKRKHGPSSSSRSETDTDS 116
+ T + ++ KK K+K K K++H+ K+ K+KH + +
Sbjct: 832 PRLPPVFCPNARQTLEVPQKEKHKKNKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKP 891
Query: 117 EKDKPSRGVGGSKKESEE 134
EK S S +S+E
Sbjct: 892 EKSSSSESSDSSDSQSDE 909
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 58 RSHLKSESSDE-SDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
+S +S S D+ DT +K+K+ R K+K+++K+R+ + ++ +++ G + E + D
Sbjct: 366 KSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDR 425
Query: 117 EKDKPSRGVGGSKKESEE 134
EKDK +KE E+
Sbjct: 426 EKDKEKDREREREKEHEK 443
Score = 35.8 bits (81), Expect = 0.24
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 8 AGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSD 67
+G S GG SR S S S S++ + H S RSH +S S
Sbjct: 297 SGKSNERKGGRSRSHTRSKSR-----SSSKSHSRRKRSQSKHRS------RSHNRSRSRQ 345
Query: 68 ESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGG 127
+ K R K +E++K R H + KRK E + +++K
Sbjct: 346 KDRRRSKSPHKKRSKSRERRKSRSRSH-SRDKRKDTREKIKEKERVKEKDREKERE---R 401
Query: 128 SKKESEEPNQGNNAAAD 144
K+ +E +G N D
Sbjct: 402 EKEREKEKERGKNKDRD 418
Score = 33.5 bits (75), Expect = 1.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 58 RSHLKSESSDESD-TNKKLKQTSRKK-------KKEKKKKRKHQHHKKTKRKHGPSSSSR 109
R +S SS S T+K +K+ S + KK+KK++++ H + + + +S +
Sbjct: 497 RRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRK 556
Query: 110 SETDTDSEKDKPSRGVGGSKKE-SEEPNQGNNAAAD 144
S D D ++ +KE ++EP+ + D
Sbjct: 557 SSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVD 592
Score = 30.8 bits (68), Expect = 7.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 57 TRSHLKS-ESSDESDTNKKL-KQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
TR +K E E D K+ ++ R+K+KE+ K + ++ R+ E +
Sbjct: 380 TREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREK 439
Query: 115 DSEKDKPSRGVGGSKKESE 133
+ EKD+ KE E
Sbjct: 440 EHEKDRDKEKEKEQDKEKE 458
Score = 30.8 bits (68), Expect = 7.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 68 ESDTNK-KLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
E D K K K R+++KE +K R + K+ ++ E D +KDK SR
Sbjct: 422 EKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSR 478
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 58 RSHLKSESSDE-SDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
+S +S S D+ DT +K+K+ R K+K+++K+R+ + ++ +++ G + E + D
Sbjct: 250 KSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDR 309
Query: 117 EKDKPSRGVGGSKKESEE 134
EKDK +KE E+
Sbjct: 310 EKDKEKDREREREKEHEK 327
Score = 35.8 bits (81), Expect = 0.24
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 8 AGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSD 67
+G S GG SR S S S S++ + H S RSH +S S
Sbjct: 181 SGKSNERKGGRSRSHTRSKSR-----SSSKSHSRRKRSQSKHRS------RSHNRSRSRQ 229
Query: 68 ESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGG 127
+ K R K +E++K R H + KRK E + +++K
Sbjct: 230 KDRRRSKSPHKKRSKSRERRKSRSRSH-SRDKRKDTREKIKEKERVKEKDREKERE---R 285
Query: 128 SKKESEEPNQGNNAAAD 144
K+ +E +G N D
Sbjct: 286 EKEREKEKERGKNKDRD 302
Score = 33.5 bits (75), Expect = 1.2
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 58 RSHLKSESSDESD-TNKKLKQTSRKK-------KKEKKKKRKHQHHKKTKRKHGPSSSSR 109
R +S SS S T+K +K+ S + KK+KK++++ H + + + +S +
Sbjct: 381 RRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRK 440
Query: 110 SETDTDSEKDKPSRGVGGSKKE-SEEPNQGNNAAAD 144
S D D ++ +KE ++EP+ + D
Sbjct: 441 SSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVD 476
Score = 30.8 bits (68), Expect = 7.8
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 57 TRSHLKS-ESSDESDTNKKL-KQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
TR +K E E D K+ ++ R+K+KE+ K + ++ R+ E +
Sbjct: 264 TREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREK 323
Query: 115 DSEKDKPSRGVGGSKKESE 133
+ EKD+ KE E
Sbjct: 324 EHEKDRDKEKEKEQDKEKE 342
Score = 30.8 bits (68), Expect = 7.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 68 ESDTNK-KLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
E D K K K R+++KE +K R + K+ ++ E D +KDK SR
Sbjct: 306 EKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSR 362
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 45.8 bits (107), Expect = 2e-04
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 64 ESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
E+ D S N ++ + ++ +EK+K+++ + ++ + GP+ S+ S+ +++SE D S
Sbjct: 647 EAPDPSVRNVEVPEWTKCSNREKRKEKEKPFYSDSEGESGPTESADSDPESESESDSKSS 706
Query: 124 GVGGS-KKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRG 182
GS + SE N+ + + G E Q+ +T KK E S G
Sbjct: 707 SESGSGESSSESDNEDQDEDEEKGR---GSESEQSEEDGKRKTKKKVPERKGEASSSDEG 763
Query: 183 DIARYKRKGDSCLGINPKKQC--ISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAIS 240
+ + ++Q SW + S K + L++++
Sbjct: 764 SDSSSSSSESEMTSESEEEQLEPASWSRKTPPSSKSAP------ATKEISLLDLEDFT-- 815
Query: 241 SKTEPPSSEPISFIPV------KDLE-----DAAPVTTWLNPL-GIYDQSTTHWLQGQG 287
PPS +P+S + DLE D+ V + L+P+ G+ Q H + G+G
Sbjct: 816 ----PPSVQPVSPPAIVSTSLAADLEGLTLTDSTLVPSLLSPVSGVGRQELLHRVAGEG 870
Score = 32.0 bits (71), Expect = 3.5
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 44 EAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHH-------- 95
E+ P ++ P + S S+SS ES + + ++ + + E ++K +
Sbjct: 684 ESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSESEQSEEDGK 743
Query: 96 KKTKRK----HGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEP 135
+KTK+K G +SSS +D+ S + S S++E EP
Sbjct: 744 RKTKKKVPERKGEASSSDEGSDSSSSSSE-SEMTSESEEEQLEP 786
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 52 EGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSE 111
E P+ K ++ S + ++ K+ S + K+ KK+RK + K+ +K+ S S S+
Sbjct: 159 EHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSD 218
Query: 112 TDTD-SEKDKPSRGVGGSKKESEEPNQ 137
++TD S++D R KKE ++ ++
Sbjct: 219 SETDSSDEDNKRRAKKAKKKEKKKKHR 245
Score = 41.6 bits (96), Expect = 0.004
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 58 RSHLK----SESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETD 113
R H K S+S +S+T+ + R+ KK KKK++K +H K K K S SR E+
Sbjct: 204 RKHKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSK-KYKKKRSKKSRKESS 262
Query: 114 TDSEKDKPSRGVGGSKKE---SEEPN 136
S K+ + K+ +EEP+
Sbjct: 263 DSSSKESQEEFLENPWKDRTKAEEPS 288
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 45.8 bits (107), Expect = 2e-04
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKK---RKHQHHKKTKRKHGPSSSSRSETDT 114
R S SS E DT+K+ KQ +KK+K+K+KK +K +HHKK K+K S T
Sbjct: 91 RKRSYSSSSTEEDTSKQKKQKYQKKEKKKEKKSKSKKGKHHKKEKKKR--KKEKHSSTPN 148
Query: 115 DSE 117
SE
Sbjct: 149 SSE 151
Score = 37.0 bits (84), Expect = 0.11
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 59 SHLKSESSDESDTNKKLKQTSRKKK---KEKKKKRKHQHHKKTKRKHGPS-SSSRSETDT 114
S SE SDE + Q ++K+ +E+KKK K + K K+K S SSS +E DT
Sbjct: 45 SSTSSEDSDEENEELNKLQALQEKRINEEEEKKKEKSKEKIKLKKKRKRSYSSSSTEEDT 104
Query: 115 DSEKDKPSRGVGGSKKESEEPNQGNN 140
+K + + K++ + +G +
Sbjct: 105 SKQKKQKYQKKEKKKEKKSKSKKGKH 130
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 45.1 bits (105), Expect = 4e-04
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 61 LKSESSDE----SDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
L+ +SDE S +++ ++ +KKKKEK KKRK + KK KRKH SS+S +DS
Sbjct: 164 LEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKH---KSSKSNEGSDS 220
Query: 117 E 117
E
Sbjct: 221 E 221
Score = 40.0 bits (92), Expect = 0.013
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSS 106
RS S E KK K+ +K+KKEKKKK+K + HK +K G S
Sbjct: 173 RSSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRK-HKSSKSNEGSDS 220
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 44.7 bits (104), Expect = 5e-04
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 73 KKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSS----RSETDTDSEKDKPSRGVGGS 128
KK K+ RKKKK +K + KH+ HK + SSSS SE+ ++SE + + +
Sbjct: 233 KKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRK 292
Query: 129 KKESEEPNQGNNAAAD 144
K++ + + NN+ ++
Sbjct: 293 KRKKNKCSGHNNSDSE 308
Score = 41.6 bits (96), Expect = 0.004
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 73 KKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKES 132
+KL + +KKKK+ +KK+K Q + +KH SSSS S + + S S S ES
Sbjct: 226 RKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSS-----STETSESSSES 280
Query: 133 EEPNQ 137
E N+
Sbjct: 281 ESNNK 285
Score = 40.0 bits (92), Expect = 0.013
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 63 SESSDESDTNKKLKQTSRKKK---------------KEKKKKRK------HQHHKKTKRK 101
SESS ES++N K K+ RKK+ K+K KKRK HH + K K
Sbjct: 274 SESSSESESNNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAK 333
Query: 102 HGP----SSSSRSETD-TDSEKDKPSRGVGGS-KKESEEPNQGNN 140
P SSR ++ + S+ DK SR S +K E +G++
Sbjct: 334 EKPRFLKHESSREDSKWSHSDSDKKSRTHKHSPEKRGSERKEGSS 378
Score = 39.3 bits (90), Expect = 0.022
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 73 KKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKES 132
K L++ R +KK+KKK RK + +K++ KH SS S + + S S+ ES
Sbjct: 223 KLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESES 282
Score = 35.8 bits (81), Expect = 0.24
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 61 LKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDK 120
LKS ++ + + KKKK+K +K+K ++K K SSSS S + + S +
Sbjct: 213 LKSLTTKQKQKLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTE 272
Query: 121 PSRGVGGSKKESEE 134
S S+ ++E
Sbjct: 273 TSESSSESESNNKE 286
Score = 32.0 bits (71), Expect = 3.5
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 63 SESSDESDTNKKLK--------QTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
+ S+E D +KK K +R+K KEK + KH+ ++ + S +S T
Sbjct: 304 NSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHESSREDSKWSHSDSDKKSRTHK 363
Query: 115 DS-EKDKPSRGVGGSKKESEEPNQGNNAAADTG 146
S EK R G S+ E + + G
Sbjct: 364 HSPEKRGSERKEGSSRSHGREERSRRSRSRSPG 396
>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 44.7 bits (104), Expect = 5e-04
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 64 ESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
E E + KK K+ +KKKK+KKKK+K + KK K+K + + +K K
Sbjct: 103 EEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKT 162
Query: 124 GVGGSK 129
G G+K
Sbjct: 163 GNEGAK 168
Score = 42.4 bits (98), Expect = 0.003
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 54 LPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETD 113
LPL + E ++ KK K+ +KKKK+KKKK+K + KK K++ R
Sbjct: 94 LPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKK 153
Query: 114 TDSEKDKPSRGVG 126
+K K + G
Sbjct: 154 KRKKKKKKTGNEG 166
Score = 38.9 bits (89), Expect = 0.029
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 60 HLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKD 119
HL + + K+ ++ +KKKK+KKKK+K + KK K+K + + K
Sbjct: 93 HLPLHGLPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKK-----KKKKKKRKRKRKR 147
Query: 120 KPSRGVGGSKKESEEPNQG 138
K R KK+ + N+G
Sbjct: 148 KRKRKKKRKKKKKKTGNEG 166
Score = 37.7 bits (86), Expect = 0.064
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 75 LKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEE 134
L Q KK+KEK+KK+K + KK K+K + + K K R KK ++
Sbjct: 99 LPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKK 158
Query: 135 PNQGNNAAA 143
+ N A
Sbjct: 159 KKKTGNEGA 167
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 44.3 bits (103), Expect = 7e-04
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 47 PAHVSEGLPLTRS-HLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPS 105
P SE LP+ + + ++ S E D K++ + KKKEKK K K + +K K K
Sbjct: 809 PLADSEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKK 868
Query: 106 SSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAA 143
S + EK++ ++G KK+S++ G+ AA
Sbjct: 869 SPKPKKKKHRKEKEERTKG----KKKSKKQPPGSEEAA 902
Score = 35.4 bits (80), Expect = 0.32
Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 49/237 (20%)
Query: 61 LKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTD----- 115
LK SD KL++ R ++K +K KR+ + +K K+ SS +E+D D
Sbjct: 713 LKVPGLPMSDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQ 772
Query: 116 ----SEKDKPSRGVGGSKKESEEPNQGNNAA-ADTGHRFVWLEDIQAVTGETFRTDKKPD 170
++ P + S ++ ++PN A D E + T K P+
Sbjct: 773 QVDIVTEEMPENAL-PSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPE 831
Query: 171 ------------PANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRK 218
P E K + K++ + PKK KKH ++
Sbjct: 832 KDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKK-----------KKHRKE 880
Query: 219 QVERYFTKKSVGLMNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIY 275
+ ER KK SK +PP SE + PV ++ AP L P Y
Sbjct: 881 KEERTKGKK------------KSKKQPPGSEEAAGEPV---QNGAPEEEQLPPESSY 922
Score = 34.3 bits (77), Expect = 0.71
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKP 121
K E + K K+ ++KKK K K+K +K +R G S + ++ +P
Sbjct: 846 KKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGSEEAAGEP 905
Query: 122 SRGVGGSKKESEEPNQGNNAAADTGH 147
+ G ++E P + A+ +
Sbjct: 906 VQN-GAPEEEQLPPESSYSLLAENSY 930
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 43.9 bits (102), Expect = 9e-04
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 65 SSDESDTNKKLKQTSRK-KKKEKKKKRKHQHHKKTKRKHGPSSSSRSETD 113
SSD SD+ ++ S+K KKK +K RKH+ KK ++K S+SS SE +
Sbjct: 213 SSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAE 262
Score = 37.4 bits (85), Expect = 0.084
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 32 CVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRK 91
C I + E H S + S SSD ++ S ++K KK+K+K
Sbjct: 174 CGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKK 233
Query: 92 H----QHHKKTKRKHGPS-SSSRSETDTDSEKDKPSRGV 125
H + HKK K+K S S+ SE++ ++ + +P V
Sbjct: 234 HRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTV 272
Score = 36.2 bits (82), Expect = 0.19
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 59 SHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEK 118
S S+S SD+ + + E+K K++ + H+K RKH R ++ +
Sbjct: 198 SSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASS 257
Query: 119 DKPSRGVGGSKKESEEPNQ 137
+ + + + + P +
Sbjct: 258 ESEAENLEAQPQSTVRPEE 276
Score = 35.0 bits (79), Expect = 0.42
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 62 KSESSDESDTNK-----KLKQTSRKKKKEKKKKRKHQHHK-KTKRKHGPSSSSRSETDTD 115
++ D+ NK K K S+ K+K K K+R +H++ + KR S E +
Sbjct: 440 RNSEKDDKYKNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKE 499
Query: 116 SEKDKPSRGVGGSKKESEEPNQ 137
EK S+G + S+E ++
Sbjct: 500 KEKQSDSKGKDQERSRSKEKSK 521
Score = 31.6 bits (70), Expect = 4.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 64 ESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPS 122
E +SD+ K ++ SR K+K K+ + K H +K K + + D K K S
Sbjct: 499 EKEKQSDSKGKDQERSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHS 557
>gi|151301228 formin binding protein 3 [Homo sapiens]
Length = 930
Score = 43.9 bits (102), Expect = 9e-04
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSE 117
R +S S+ E ++ + +++ +K KK KKK +K +H + + E D +SE
Sbjct: 818 RQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESE 877
Query: 118 KDKPSRGVGGSKKESEEPNQGNNA 141
KD+ +R SK +S + G ++
Sbjct: 878 KDR-TRQRSESKHKSPKKKTGKDS 900
Score = 40.0 bits (92), Expect = 0.013
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKK---------KKEKKKKRKHQHHKKTKRKHGPSSS 107
+RS S+S D+ +KK +Q S + + E+ K+ +H KK+K++ S S
Sbjct: 799 SRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDS 858
Query: 108 SRSETDTDSEKDKPSRGVGGSKKESEEPNQGNN 140
E+D + EKDK + K + + ++ +
Sbjct: 859 --PESDAEREKDKKEKDRESEKDRTRQRSESKH 889
Score = 33.5 bits (75), Expect = 1.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSS 108
R H +++ K K+ R+ +K++ ++R HK K+K G S +
Sbjct: 852 RRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGN 902
Score = 31.2 bits (69), Expect = 6.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 81 KKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNN 140
K KK KK +KH H+K R S S S++D D K R S+ SE + +
Sbjct: 783 KNKKHSKKSKKH--HRKRSR-----SRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAES 835
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 43.9 bits (102), Expect = 9e-04
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKK--KEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
+RSH +SE S + + + SR +K K + K R + +K+K K S + +
Sbjct: 333 SRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVK 392
Query: 115 DSEKDKPSRGVGGSKKESEEPNQGNNAAAD 144
++K S KES+ N+ N + D
Sbjct: 393 SGSREKQSEDTNTESKESDTKNEVNGTSED 422
Score = 33.9 bits (76), Expect = 0.93
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 14/180 (7%)
Query: 61 LKSESSD----ESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
LK E + E + ++ ++ RK+++E++++ K + + +RK S S S +D
Sbjct: 247 LKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDR 306
Query: 117 EKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEY 176
+ SR + S E + + E R K D ++++
Sbjct: 307 ---RCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKH 363
Query: 177 KSLYRGDIARYKRKGDSCLGINPKKQCI-------SWEGTSTEKKHSRKQVERYFTKKSV 229
+S R K K G + KK + E T+TE K S + E T + +
Sbjct: 364 RSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDI 423
Score = 32.7 bits (73), Expect = 2.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRK--KKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
+R +S+S D + K R+ +K ++K+KR KK+ K G +T+T
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKR-GSDDKKSSVKSGSREKQSEDTNT 405
Query: 115 DSEKDKPSRGVGGSKKE--SEEPNQGN 139
+S++ V G+ ++ SE Q N
Sbjct: 406 ESKESDTKNEVNGTSEDIKSEGDTQSN 432
Score = 31.6 bits (70), Expect = 4.6
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 66 SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
++E D +++LK+ +++++E++K+R+ + ++ +++ E D E+ K SR
Sbjct: 238 TEEPDRDERLKK-EKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSR 294
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 43.9 bits (102), Expect = 9e-04
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKK--KEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
+RSH +SE S + + + SR +K K + K R + +K+K K S + +
Sbjct: 333 SRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVK 392
Query: 115 DSEKDKPSRGVGGSKKESEEPNQGNNAAAD 144
++K S KES+ N+ N + D
Sbjct: 393 SGSREKQSEDTNTESKESDTKNEVNGTSED 422
Score = 33.9 bits (76), Expect = 0.93
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 14/180 (7%)
Query: 61 LKSESSD----ESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
LK E + E + ++ ++ RK+++E++++ K + + +RK S S S +D
Sbjct: 247 LKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDR 306
Query: 117 EKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEY 176
+ SR + S E + + E R K D ++++
Sbjct: 307 ---RCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKH 363
Query: 177 KSLYRGDIARYKRKGDSCLGINPKKQCI-------SWEGTSTEKKHSRKQVERYFTKKSV 229
+S R K K G + KK + E T+TE K S + E T + +
Sbjct: 364 RSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDI 423
Score = 32.7 bits (73), Expect = 2.1
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRK--KKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDT 114
+R +S+S D + K R+ +K ++K+KR KK+ K G +T+T
Sbjct: 347 SRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKR-GSDDKKSSVKSGSREKQSEDTNT 405
Query: 115 DSEKDKPSRGVGGSKKE--SEEPNQGN 139
+S++ V G+ ++ SE Q N
Sbjct: 406 ESKESDTKNEVNGTSEDIKSEGDTQSN 432
Score = 31.6 bits (70), Expect = 4.6
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 66 SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSR 123
++E D +++LK+ +++++E++K+R+ + ++ +++ E D E+ K SR
Sbjct: 238 TEEPDRDERLKK-EKQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSR 294
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 43.1 bits (100), Expect = 0.002
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 50 VSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEK--KKKRKHQHHKK--TKRKHGPS 105
+ +G+ + + H+ +E +K K T +KKKK+ KKK+K KK TK K +
Sbjct: 4 LDKGVAMEKVHVITEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTT 63
Query: 106 SSSRSETDTDSEKDKPSRGVGGSKKESEEPNQ 137
++ ++ T T EK+K +KE E+ +
Sbjct: 64 TTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKE 95
Score = 35.0 bits (79), Expect = 0.42
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKH----GPSSSSRSET 112
T + K + ++ +K K+ ++K+KEKKKK+K + KK K+ + G +S SE
Sbjct: 69 TTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCGLEIASWSEM 128
Query: 113 DTDSEKDKPSRG 124
T + + +G
Sbjct: 129 TTAAAGEGEEQG 140
Score = 34.7 bits (78), Expect = 0.54
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 71 TNKKLKQTSRKKKKEKKKKRKHQHHKK----TKRKHGPSSSSRSETDTDSEKDKPSRGVG 126
T KK K+T+ KKK K K++ KK T ++ E + + EK+K
Sbjct: 41 TMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKK 100
Query: 127 GSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGE 161
KK+ ++ + NA W E A GE
Sbjct: 101 KKKKKKKKKKKKLNAKVCGLEIASWSEMTTAAAGE 135
Score = 33.1 bits (74), Expect = 1.6
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 63 SESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPS 122
++ ++ +K K+ ++K+KEK+KK+K + KK K+K + E + SE +
Sbjct: 73 TKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCGLEIASWSEMTTAA 132
Query: 123 RGVG 126
G G
Sbjct: 133 AGEG 136
Score = 32.0 bits (71), Expect = 3.5
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRK 101
T+ + + ++ +K K+ ++K+KEK+K++K + KK K+K
Sbjct: 65 TKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109
Score = 32.0 bits (71), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRK 101
T + E E + K+ ++ K+K+++KKK+K + KK K+K
Sbjct: 68 TTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKK 112
Score = 31.6 bits (70), Expect = 4.6
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
T+ +++ + T KK T+ K+K+++K+K K + +K K K + +
Sbjct: 50 TKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKK 109
Query: 117 EK 118
+K
Sbjct: 110 KK 111
>gi|13236559 hypothetical protein LOC79169 [Homo sapiens]
Length = 263
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 7 FAGLSEAPDGGSSRKELD---WLSNPSFCVGSITSLSQQTEAAPA--------HVSEGLP 55
FA + + G K +D L + S VG + + EAA V G P
Sbjct: 99 FAEVCKREGGDPEEKGVDRLLGLGSASGSVGRVAMSREDKEAAKLGLSVFTHHRVESGGP 158
Query: 56 LTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTD 115
T + D + ++ RK KKEKKKK+K +H K+ K+K T +
Sbjct: 159 GTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRRPAEATSSP 218
Query: 116 SEKDKP 121
+ ++P
Sbjct: 219 TSPERP 224
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 42.4 bits (98), Expect = 0.003
Identities = 63/306 (20%), Positives = 112/306 (36%), Gaps = 63/306 (20%)
Query: 63 SESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPS 122
SE E+ T + KKKK+KKKK+ + K+ ++K GPS ++ K K
Sbjct: 295 SEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEE 354
Query: 123 RGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRG 182
K+E EE R LE+++A E R +++ +
Sbjct: 355 E--ERQKREEEE-------------RIKRLEELEAKRKEEERLEQE------------KR 387
Query: 183 DIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAISSK 242
+ + K K +K+ + EG K + T K L+ GV + SK
Sbjct: 388 ERKKQKEK--------ERKERLKKEGKLLTKSQREARARAEATLK---LLQAQGVEVPSK 436
Query: 243 TEPPSSEPI----------SFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQE 292
P PI + K++ ++ + + + QG PE+E
Sbjct: 437 DSLPKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVE------------VMEQGVPEKE 484
Query: 293 SKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQ 352
P +P+ E A ++++ + + + EV ++P EE E+
Sbjct: 485 ETPPPVEPEEEEDTEDAGLDDWEAMASDEETEK---VEGNKVHIEVKENPEEEEEEEEEE 541
Query: 353 EKRKRS 358
E+ + S
Sbjct: 542 EEDEES 547
Score = 37.0 bits (84), Expect = 0.11
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 21/164 (12%)
Query: 66 SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGV 125
+++ D + K+K ++KK ++K+++RK + +K K + D K K
Sbjct: 216 NEDDDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKE---- 271
Query: 126 GGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVT-------GETFRTDKKPDPANWEYKS 178
S+++ EE + DTG E + T G+ + DKK E K
Sbjct: 272 --SQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKE 329
Query: 179 LYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVER 222
+ K+KG S + ++ ++ + E++ R++ ER
Sbjct: 330 -------KEKKKGPSKATVKAMQEALA-KLKEEEERQKREEEER 365
Score = 32.3 bits (72), Expect = 2.7
Identities = 68/315 (21%), Positives = 116/315 (36%), Gaps = 62/315 (19%)
Query: 63 SESSDESDTNKKLKQTSRKKKKEKKK----KRKHQHHKKTKRKHGPSSSSRSETDTDSEK 118
S S D+ D NK K+ K +K KK + + KK K + +SS S ++D E
Sbjct: 135 SGSDDDDDFNKLPKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESD-EF 193
Query: 119 DKPSRGVGGSKKESEEPN-QGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYK 177
+ +G ++K PN + N D + + +A E R KK D + +
Sbjct: 194 LQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKE--RERKKRDEEKAKLR 251
Query: 178 SLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGV 237
L K++ + + +++K S+++ E K V +D
Sbjct: 252 KL------------------KEKEELETGKKDQSKQKESQRKFEEETVKSKV---TVDTG 290
Query: 238 AISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPD 297
I P+SE + P +D D+ + +G E++ K+
Sbjct: 291 VI------PASEEKAETPTAAEDDNEG-----------DKKKKDKKKKKGEKEEKEKEKK 333
Query: 298 AQPDS------ESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGE 351
P + A K K EE ++ E R +L ++E E E
Sbjct: 334 KGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEE----------ERLE 383
Query: 352 QEKRKRSLKLILEKK 366
QEKR+R + E+K
Sbjct: 384 QEKRERKKQKEKERK 398
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 42.0 bits (97), Expect = 0.003
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKP 121
++E +E + +K K+ ++K+KEKKKK K +K K + + + + E+ +
Sbjct: 18 ETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREE 77
Query: 122 SRGVGGSKKESEEPNQG 138
+KE EE +G
Sbjct: 78 EEEEEEEEKEEEEKEEG 94
Score = 41.6 bits (96), Expect = 0.004
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSE 117
R + E E + KK K+T ++K+KE+++K++ + KK K + E + + E
Sbjct: 29 RKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEE---EEREEEEEEEEEE 85
Query: 118 KDKPSRGVGGSKKESEE 134
K++ + G +K+ ++
Sbjct: 86 KEEEEKEEGRRRKKKKK 102
Score = 39.7 bits (91), Expect = 0.017
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKE--KKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKD 119
K + E++ ++ ++T +++KE +K+KRK + +K K+K + R E + + +K
Sbjct: 3 KKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKR 62
Query: 120 KPSRGVGGSKKESEE 134
K R KKE EE
Sbjct: 63 KRKR---KKKKEEEE 74
Score = 35.0 bits (79), Expect = 0.42
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRK 101
+ E +E + ++ K+ R++KK+KK++RK + +K K++
Sbjct: 77 EEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKR 116
Score = 32.7 bits (73), Expect = 2.1
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 58 RSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRK 101
R + E +E + +K + RKKKK++++K + + KK +R+
Sbjct: 75 REEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRR 118
Score = 32.0 bits (71), Expect = 3.5
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRK 101
K E E +K K+ R+K++E++KK+K + +KTK+K
Sbjct: 86 KEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRR--RKTKKK 123
Score = 31.2 bits (69), Expect = 6.0
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 80 RKKKKEKKKKRKHQHHKKT---KRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEE 134
+KKKK+KK+ + + ++T + K G R E + EK K ++ K++ EE
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEE 58
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 42.0 bits (97), Expect = 0.003
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 12 EAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDT 71
++ DG +E+D++S+ GS +S + A A E P E SD S+
Sbjct: 260 DSDDGDFEGQEVDYMSD-----GSSSSQEEPESKAKAPQQEEGPKG----VDEQSDSSEE 310
Query: 72 NKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSE 117
+++ K K++E++KK KK ++ S S E+D DSE
Sbjct: 311 SEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSE 356
Score = 31.2 bits (69), Expect = 6.0
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 65 SSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRG 124
SSD SD + + + R K +KK KK K+K + D D E +
Sbjct: 217 SSDASDASGE--EGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYM 274
Query: 125 VGGSKKESEEPNQGNNA-AADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGD 183
GS EEP A + G + V D Q+ + E +K P+ E +
Sbjct: 275 SDGSSSSQEEPESKAKAPQQEEGPKGV---DEQSDSSEESEEEKPPEEDKEEEEEKKAPT 331
Query: 184 IARYKRKGDS 193
KR+ DS
Sbjct: 332 PQEKKRRKDS 341
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 42.0 bits (97), Expect = 0.003
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Query: 35 SITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDES----DTNKKLKQTSRKKKKEKKKKR 90
SI + ++ P H + S SESS ES + +++ K R K K KK+R
Sbjct: 180 SIKDVFEKKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRR 239
Query: 91 KH-QHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRF 149
K ++ + KH + SE +EK R V S K + + +RF
Sbjct: 240 KEASSSEEPRNKHAMNPKGHSERSDTNEK----RSVDSSAKREKPVVRPEEIPPVPENRF 295
Query: 150 VWLEDIQAVTGETFRTDKKPDPA 172
+ D+ VT E K PD A
Sbjct: 296 LLRRDMPVVTAEP--EPKIPDVA 316
Score = 36.6 bits (83), Expect = 0.14
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 19 SRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQT 78
SR LD+ S+ S S Q T++A +G + R+H K E + + +K ++
Sbjct: 801 SRSSLDYSSD------SEQSSVQATQSAQEKEKQG-QMERTHNKQEKNRGEEKSKSEREC 853
Query: 79 SRKKKKEKKKKRKH--QHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEPN 136
KK+ K+ ++ K KRK+ S SE++++ + K S+ + EE
Sbjct: 854 PHSKKRTLKENLSDHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKEEGE 913
Query: 137 QGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWE 175
+++ ++ + ++ T + T D W+
Sbjct: 914 ATSDSESEVSEIHI---KVKPTTKSSTNTSLPDDNGAWK 949
Score = 33.5 bits (75), Expect = 1.2
Identities = 53/257 (20%), Positives = 91/257 (35%), Gaps = 16/257 (6%)
Query: 14 PDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNK 73
P G + D LS+P SLSQ++ + + T H K
Sbjct: 377 PPSGEKWSKGDKLSDPCSSRWDERSLSQRSRSWSYNGYYSDLSTARH-------SGHHKK 429
Query: 74 KLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESE 133
+ K+ K KK+ KK++ + HK+TK++ R +D E K S S + E
Sbjct: 430 RRKEKKVKHKKKGKKQKHCRRHKQTKKR-------RILIPSDIESSKSSTRRMKSSCDRE 482
Query: 134 EPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDI-ARYKRKGD 192
++ ++ ++ + W + + V + + + +S RG +R K
Sbjct: 483 RSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSS 542
Query: 193 SCLGINPKKQCISWEG-TSTEKKHSRKQVERYFTKKSVGLMNIDGVAISSKTEPPSSEPI 251
S K + S G K RK + K V + ++
Sbjct: 543 SHSRSRSKSRSSSKSGHRKRASKSPRKTASQLSENKPVKTEPLRATMAQNENVVVQPVVA 602
Query: 252 SFIPVKDLEDAAPVTTW 268
IPV L D+ P + W
Sbjct: 603 ENIPVIPLSDSPPPSRW 619
Score = 33.5 bits (75), Expect = 1.2
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 38 SLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRK-HQHHK 96
S ++ A +H P +RSH +++ SD S ++ TS ++ KR+ K
Sbjct: 705 SYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGK 764
Query: 97 KTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKES 132
K H SSS SEK S+ V G + S
Sbjct: 765 KNSVSHKKHSSS-------SEKTLHSKYVKGRDRSS 793
Score = 31.6 bits (70), Expect = 4.6
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 71 TNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKK 130
+ + LK+ KK KEK K +K + HK KRK E + E++ + V K
Sbjct: 981 SKENLKREHTKKVKEKLKGKKDKKHKAPKRKQAFHWQPPLEFGEEEEEEIDDKQVTQESK 1040
Query: 131 ESE 133
E +
Sbjct: 1041 EKK 1043
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 42.0 bits (97), Expect = 0.003
Identities = 21/94 (22%), Positives = 40/94 (42%)
Query: 53 GLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSET 112
G P +S+ +SD + ++ S ++ + + + + H +S +E+
Sbjct: 1071 GSPRRPRRQRSDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAES 1130
Query: 113 DTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTG 146
D +SE+ + G G EP NN A+D G
Sbjct: 1131 DHESERGSDNEGSGQGSGNESEPEGSNNEASDRG 1164
Score = 32.3 bits (72), Expect = 2.7
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 63 SESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPS 122
S S+ +SD +++ RKK + +K P R +D DS+ D+PS
Sbjct: 1037 SNSNSDSDEDEQ-----RKKCASSESDSDENQNKSGSEAGSPRRPRRQRSDQDSDSDQPS 1091
Query: 123 RGVGGSKKESEEPNQGNNAAADTG 146
R K+ Q +N + +G
Sbjct: 1092 R-----KRRPSGSEQSDNESVQSG 1110
>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
Length = 241
Score = 42.0 bits (97), Expect = 0.003
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 58 RSHLKSESSD-ESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTK 99
R S+SSD ESDT K+ + TS+ K KKKK+K +H KK K
Sbjct: 198 RKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK 240
Score = 38.5 bits (88), Expect = 0.038
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 54 LPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETD 113
+P + S E + + SRK+KKEKKKK K RK S SS SE+D
Sbjct: 158 IPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKK------KHRDRKSSDSDSSDSESD 211
Query: 114 TDSEKDKPSRGVGGSKKESEE 134
T S+ +KK+ ++
Sbjct: 212 TGKRARHTSKDSKAAKKKKKK 232
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 41.6 bits (96), Expect = 0.004
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKK----TKRKHGPSSSSRSET 112
T+ + K S ES+ +K K+ S+K KK KK K + KK T + G S R +T
Sbjct: 288 TKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERKDT 347
Query: 113 DTDSEKDKPSRGVGGSKKESEEPNQGNNAAAD 144
D +K K +KK E + + A D
Sbjct: 348 KKDKKKLKKDDKKKDTKKYPESTDTESGDAKD 379
Score = 41.2 bits (95), Expect = 0.006
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 62 KSESSDE--SDTNKKLKQTSRK-KKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEK 118
KS +DE +D + + K S+K KK EKK K+ + K K + S+ E+D + +K
Sbjct: 435 KSVKNDEESTDADSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKK 494
Query: 119 DKP-SRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWE-Y 176
DK S+ GSKK+ ++ + + + D D + TG F+T K ++ E
Sbjct: 495 DKKHSKEKKGSKKDIKKDARKDTESTDAEF------DESSKTG--FKTSTKIKGSDTESE 546
Query: 177 KSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKS-VGLMNID 235
+SLY+ KK+ +GTS K + +R F S N
Sbjct: 547 ESLYKP---------------GAKKKIDESDGTSANSKMEGLESKRGFRMSSKKTTFNEK 591
Query: 236 GVAISSKTEPPSSE 249
G S+ PPS E
Sbjct: 592 GEKASTGRVPPSRE 605
Score = 37.0 bits (84), Expect = 0.11
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 16/255 (6%)
Query: 61 LKSESSDES-DTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKD 119
L +S DES + + L+ S+ K K K TK+ SS + SE D++KD
Sbjct: 250 LVGQSDDESINFDAWLRNYSQNNSKNYSLKYTKYTKKDTKKNAKKSSDAESEDSKDAKKD 309
Query: 120 --KPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYK 177
K + V K+ + + A++G +D + + + DKK D +
Sbjct: 310 SKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPES 369
Query: 178 SLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGV 237
+ A+ R N KK + +KK K++ F+ S +
Sbjct: 370 TDTESGDAKDARNDSR----NLKK-----ASKNDDKKKDAKKIT--FSTDSESELESKES 418
Query: 238 AISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPD 297
K + S+ + VK+ E++ + P G + +G+ +++ K+ D
Sbjct: 419 QKDEKKDKKDSKTDNKKSVKNDEESTDADS--EPKGDSKKGKKDEKKGKKDSKKDDKKKD 476
Query: 298 AQPDSESAALKAKVE 312
A+ ++ES +++ +E
Sbjct: 477 AKKNAESTEMESDLE 491
Score = 36.6 bits (83), Expect = 0.14
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 63 SESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSE-------TDTD 115
+ES D D K K+ +K KK+ KKK ++ + T + G + +R++ + D
Sbjct: 335 AESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKND 394
Query: 116 SEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWE 175
+K + + ESE ++ + + ++ ++V + TD +P
Sbjct: 395 DKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDADSEP---- 450
Query: 176 YKSLYRGDIARYK---RKGDSCLGINPKKQCISWEGTSTE-------KKHSRKQVERYFT 225
+GD + K +KG + KK+ STE KK + E+ +
Sbjct: 451 -----KGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKHSKEKKGS 505
Query: 226 KKSV 229
KK +
Sbjct: 506 KKDI 509
Score = 32.7 bits (73), Expect = 2.1
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
T+ K + SD + + ++K K+ KK K KK +K S+ + S D
Sbjct: 284 TKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDE 343
Query: 117 EKD--KPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPD 170
KD K + + K+ + + ++G D + + + DKK D
Sbjct: 344 RKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDDKKKD 399
Score = 30.8 bits (68), Expect = 7.8
Identities = 42/187 (22%), Positives = 62/187 (33%), Gaps = 36/187 (19%)
Query: 62 KSESSDESDTNKKLKQTSRKKKKEK----------------------KKKRKHQHHKKTK 99
K E D KKLK+ +KK +K KK K+ KK
Sbjct: 341 KDERKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRNLKKASKNDDKKKDA 400
Query: 100 RKHGPSSSSRSETDT-----DSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLED 154
+K S+ S SE ++ D +KDK K + + + G +D
Sbjct: 401 KKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDADSEPKGDSKKGKKD 460
Query: 155 IQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKK 214
+ ++ + DKK D + D+ K K S KK KK
Sbjct: 461 EKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKHSKEKKGSKKDI---------KK 511
Query: 215 HSRKQVE 221
+RK E
Sbjct: 512 DARKDTE 518
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 41.6 bits (96), Expect = 0.004
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 66 SDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRG 124
SDE ++++LK+ RKK++EK+K+R + K ++H SS S+ DS+ +G
Sbjct: 94 SDEEKSHRRLKR-KRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKG 151
Score = 33.5 bits (75), Expect = 1.2
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 56 LTRSHLKSESSDESDTNKKLKQTSRKKKKEK--KKKRKHQHHKKTKRKHGPSSSSRSETD 113
L L+ + ++E+ + SRK+K EK + + H++ KRK
Sbjct: 59 LEEGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLKRKRKKEREKEKRRS 118
Query: 114 TDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHR 148
K K R S S+ + + + ++ GHR
Sbjct: 119 KKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHR 153
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 41.6 bits (96), Expect = 0.004
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 57 TRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDS 116
T S SESS++ KK K+ ++KKK+KK+K K + ++ S ++ + D
Sbjct: 140 TPSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDD 199
Query: 117 EKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEY 176
K + + EP +G ED++ R KK P + E+
Sbjct: 200 TGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLE-------RELKKEKPKH-EH 251
Query: 177 KSLYRGDIARYKRK 190
KS R + K +
Sbjct: 252 KSSSRREAREEKTR 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,687,189
Number of Sequences: 37866
Number of extensions: 2282416
Number of successful extensions: 17840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 12774
Number of HSP's gapped (non-prelim): 3256
length of query: 1164
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1051
effective length of database: 13,968,660
effective search space: 14681061660
effective search space used: 14681061660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.