Guide to the Human Genome
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Name: C1orf35 Sequence: fasta or formatted (263aa) NCBI GI: 13236559
Description:

hypothetical protein LOC79169

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         22           2
 C cysteine            1.9          5           2
 D aspartate           5.3         14           1
 E glutamate           9.5         25           3
 F phenylalanine       1.5          4           1
 G glycine             9.9         26           2
 H histidine           4.2         11           4
 I isoleucine          0.0          0           0
 K lysine             12.2         32           6
 L leucine             4.9         13           2
 M methionine          1.1          3           1
 N asparagine          1.9          5           1
 P proline             4.9         13           1
 Q glutamine           2.3          6           1
 R arginine           11.8         31           2
 S serine             10.3         27           2
 T threonine           3.0          8           1
 V valine              4.2         11           1
 W tryptophan          1.5          4           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79169 
KIAA1853              0.048   KIAA1853 protein 
LOC100133599          0.048   PREDICTED: hypothetical protein 
SCAF1                 0.048   SR-related CTD-associated factor 1 
LOC100133599          0.046   PREDICTED: hypothetical protein 
LOC100294364          0.046   PREDICTED: hypothetical protein 
C19orf29              0.046   chromosome 19 open reading frame 29 
C19orf29              0.046   chromosome 19 open reading frame 29 
RBBP6                 0.046   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.046   retinoblastoma-binding protein 6 isoform 1 
FLJ37078              0.046   hypothetical protein LOC222183 
PRPF40A               0.044   formin binding protein 3 
PPIG                  0.042   peptidylprolyl isomerase G 
CIR1                  0.041   CBF1 interacting corepressor 
LOC100133698          0.041   PREDICTED: hypothetical protein 
RP9                   0.039   retinitis pigmentosa 9 
SRRM2                 0.039   splicing coactivator subunit SRm300 
CROP                  0.039   cisplatin resistance-associated overexpressed protei...
CROP                  0.039   cisplatin resistance-associated overexpressed protei...
SFRS2                 0.037   splicing factor, arginine/serine-rich 2 
SON                   0.037   SON DNA-binding protein isoform F 
SON                   0.037   SON DNA-binding protein isoform B 
GPATCH8               0.037   G patch domain containing 8 
AP3D1                 0.037   adaptor-related protein complex 3, delta 1 subunit ...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.037   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ATAD2                 0.037   ATPase family, AAA domain containing 2 
TCOF1                 0.037   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.037   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.037   Treacher Collins-Franceschetti syndrome 1 isoform d...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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