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Search of human proteins with 38201663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38201663 inhibitor of growth family, member 1 isoform C
[Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38201663 inhibitor of growth family, member 1 isoform C [Homo... 488 e-138
gi|38201667 inhibitor of growth family, member 1 isoform A [Homo... 486 e-138
gi|38201661 inhibitor of growth family, member 1 isoform D [Homo... 485 e-137
gi|38201665 inhibitor of growth family, member 1 isoform B [Homo... 438 e-123
gi|4504695 inhibitor of growth family, member 2 [Homo sapiens] 282 2e-76
gi|189083830 inhibitor of growth family, member 4 isoform 5 [Hom... 150 9e-37
gi|189083821 inhibitor of growth family, member 4 isoform 9 [Hom... 150 9e-37
gi|189083826 inhibitor of growth family, member 4 isoform 3 [Hom... 149 2e-36
gi|38201670 inhibitor of growth family, member 4 isoform 1 [Homo... 149 2e-36
gi|189083828 inhibitor of growth family, member 4 isoform 4 [Hom... 148 3e-36
gi|18644730 inhibitor of growth family, member 5 [Homo sapiens] 147 1e-35
gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo... 119 2e-27
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 52 6e-07
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 51 1e-06
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 51 1e-06
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 50 2e-06
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 47 1e-05
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 47 1e-05
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 47 1e-05
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 47 1e-05
gi|189083832 inhibitor of growth family, member 4 isoform 6 [Hom... 47 2e-05
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 46 3e-05
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 45 4e-05
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 45 5e-05
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 45 5e-05
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 45 5e-05
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 44 1e-04
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 44 1e-04
>gi|38201663 inhibitor of growth family, member 1 isoform C [Homo
sapiens]
Length = 235
Score = 488 bits (1256), Expect = e-138
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MEILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTR 60
MEILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTR
Sbjct: 1 MEILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTR 60
Query: 61 QVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASS 120
QVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASS
Sbjct: 61 QVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASS 120
Query: 121 NHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMI 180
NHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMI
Sbjct: 121 NHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMI 180
Query: 181 GCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 235
GCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 181 GCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 235
>gi|38201667 inhibitor of growth family, member 1 isoform A [Homo
sapiens]
Length = 279
Score = 486 bits (1251), Expect = e-138
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 2 EILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ 61
EILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ
Sbjct: 46 EILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ 105
Query: 62 VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN 121
VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN
Sbjct: 106 VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN 165
Query: 122 HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG 181
HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG
Sbjct: 166 HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG 225
Query: 182 CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 235
CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 226 CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 279
>gi|38201661 inhibitor of growth family, member 1 isoform D [Homo
sapiens]
Length = 422
Score = 485 bits (1248), Expect = e-137
Identities = 233/234 (99%), Positives = 234/234 (100%)
Query: 2 EILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ 61
+ILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ
Sbjct: 189 QILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ 248
Query: 62 VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN 121
VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN
Sbjct: 249 VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN 308
Query: 122 HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG 181
HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG
Sbjct: 309 HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG 368
Query: 182 CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 235
CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 369 CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKERAYNR 422
>gi|38201665 inhibitor of growth family, member 1 isoform B [Homo
sapiens]
Length = 210
Score = 438 bits (1126), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 26 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 85
MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA
Sbjct: 1 MLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKA 60
Query: 86 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 145
GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR
Sbjct: 61 GADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKR 120
Query: 146 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 205
SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG
Sbjct: 121 SKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 180
Query: 206 KWYCPKCRGENEKTMDKALEKSKKERAYNR 235
KWYCPKCRGENEKTMDKALEKSKKERAYNR
Sbjct: 181 KWYCPKCRGENEKTMDKALEKSKKERAYNR 210
>gi|4504695 inhibitor of growth family, member 2 [Homo sapiens]
Length = 280
Score = 282 bits (721), Expect = 2e-76
Identities = 136/230 (59%), Positives = 173/230 (75%), Gaps = 10/230 (4%)
Query: 2 EILKELDECYERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQ 61
E LKE+D+ YE++ +E D QK+R+ +QRALI SQELGDEKIQIV+QM+ELVENR RQ
Sbjct: 58 ETLKEIDDVYEKYKKEDDLNQKKRLQQLLQRALINSQELGDEKIQIVTQMLELVENRARQ 117
Query: 62 VDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSN 121
++ H + F+ E + A + K + +P+ +S+R RRQR +E+R+
Sbjct: 118 MELHSQCFQDPAE-SERASDKAKMDSSQPER---------SSRRPRRQRTSESRDLCHMA 167
Query: 122 HDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIG 181
+ +D PKEKK+K++KKKKRSKAK EREASP + IDPNEPTYCLCNQVSYGEMIG
Sbjct: 168 NGIEDCDDQPPKEKKSKSAKKKKRSKAKQEREASPVEFAIDPNEPTYCLCNQVSYGEMIG 227
Query: 182 CDNDECPIEWFHFSCVGLNHKPKGKWYCPKCRGENEKTMDKALEKSKKER 231
CDN++CPIEWFHFSCV L +KPKGKWYCPKCRG+NEKTMDK+ EK+KK+R
Sbjct: 228 CDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDNEKTMDKSTEKTKKDR 277
>gi|189083830 inhibitor of growth family, member 4 isoform 5 [Homo
sapiens]
Length = 225
Score = 150 bits (379), Expect = 9e-37
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 12/210 (5%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 25 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 84
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASG 130
A +L + S + KG+ + K K++ R R+ N D + +
Sbjct: 85 A--DLKEKQIESSDYDSSSSKGKKKGRTQK--EKKAARARSK------GKNSDEEAPKTA 134
Query: 131 TPKEKKAKTSKKKKRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECP 188
K K +TS + + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C
Sbjct: 135 QKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS 194
Query: 189 IEWFHFSCVGLNHKPKGKWYCPKCRGENEK 218
IEWFHF+CVGL KP+GKW+CP+C E +K
Sbjct: 195 IEWFHFACVGLTTKPRGKWFCPRCSQERKK 224
>gi|189083821 inhibitor of growth family, member 4 isoform 9 [Homo
sapiens]
Length = 249
Score = 150 bits (379), Expect = 9e-37
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 12/210 (5%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 49 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 108
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASG 130
A +L + S + KG+ + K K++ R R+ N D + +
Sbjct: 109 A--DLKEKQIESSDYDSSSSKGKKKGRTQK--EKKAARARSK------GKNSDEEAPKTA 158
Query: 131 TPKEKKAKTSKKKKRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECP 188
K K +TS + + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C
Sbjct: 159 QKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS 218
Query: 189 IEWFHFSCVGLNHKPKGKWYCPKCRGENEK 218
IEWFHF+CVGL KP+GKW+CP+C E +K
Sbjct: 219 IEWFHFACVGLTTKPRGKWFCPRCSQERKK 248
>gi|189083826 inhibitor of growth family, member 4 isoform 3 [Homo
sapiens]
Length = 246
Score = 149 bits (377), Expect = 2e-36
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 19/212 (8%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 49 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 108
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASG 130
A + K ++ D +SK R Q+ + S + D+ A
Sbjct: 109 ADL---------------KEKQIESSDYDSSSSKEGRTQKEKKAARARSKGKNSDEEAPK 153
Query: 131 TPKEKK--AKTSKKKKRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDE 186
T ++K +TS + + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +
Sbjct: 154 TAQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPD 213
Query: 187 CPIEWFHFSCVGLNHKPKGKWYCPKCRGENEK 218
C IEWFHF+CVGL KP+GKW+CP+C E +K
Sbjct: 214 CSIEWFHFACVGLTTKPRGKWFCPRCSQERKK 245
>gi|38201670 inhibitor of growth family, member 4 isoform 1 [Homo
sapiens]
Length = 248
Score = 149 bits (377), Expect = 2e-36
Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 49 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 108
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASG 130
A +L + S + KG+ + R+++++ + N D + +
Sbjct: 109 A--DLKEKQIESSDYDSSSSKGKKS---------RTQKEKKAARARSKGKNSDEEAPKTA 157
Query: 131 TPKEKKAKTSKKKKRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECP 188
K K +TS + + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C
Sbjct: 158 QKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCS 217
Query: 189 IEWFHFSCVGLNHKPKGKWYCPKCRGENEK 218
IEWFHF+CVGL KP+GKW+CP+C E +K
Sbjct: 218 IEWFHFACVGLTTKPRGKWFCPRCSQERKK 247
>gi|189083828 inhibitor of growth family, member 4 isoform 4 [Homo
sapiens]
Length = 245
Score = 148 bits (374), Expect = 3e-36
Identities = 75/211 (35%), Positives = 115/211 (54%), Gaps = 18/211 (8%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 49 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 108
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSK-RSRRQRNNENRENASSNHDHDDGAS 129
A + K ++ D +SK R+++++ + N D + +
Sbjct: 109 ADL---------------KEKQIESSDYDSSSSKGRTQKEKKAARARSKGKNSDEEAPKT 153
Query: 130 GTPKEKKAKTSKKKKRSKAK--AEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDEC 187
K K +TS + + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +C
Sbjct: 154 AQKKLKLVRTSPEYGMPSVTFGSVHPSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDC 213
Query: 188 PIEWFHFSCVGLNHKPKGKWYCPKCRGENEK 218
IEWFHF+CVGL KP+GKW+CP+C E +K
Sbjct: 214 SIEWFHFACVGLTTKPRGKWFCPRCSQERKK 244
>gi|18644730 inhibitor of growth family, member 5 [Homo sapiens]
Length = 240
Score = 147 bits (370), Expect = 1e-35
Identities = 77/200 (38%), Positives = 110/200 (55%), Gaps = 24/200 (12%)
Query: 22 QKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFEAQQE---LGDT 78
Q+ L +Q A + +E D+K+Q+ Q E+V+ R++D+ + FEA + G
Sbjct: 60 QRVERLQKIQNAYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFEADLKDKMEGSD 119
Query: 79 AGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAK 138
+SG G + +G+ + +R + R +S D TPK+KK K
Sbjct: 120 FESSGGRGLKKGRGQ-------------KEKRGSRGRGRRTSEED-------TPKKKKHK 159
Query: 139 TSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVG 198
+ + + D+P+DPNEPTYCLC+QVSYGEMIGCDN +CPIEWFHF+CV
Sbjct: 160 GGSEFTDTILSVH-PSDVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVD 218
Query: 199 LNHKPKGKWYCPKCRGENEK 218
L KPKGKW+CP+C E K
Sbjct: 219 LTTKPKGKWFCPRCVQEKRK 238
>gi|38201655 inhibitor of growth family, member 3 isoform 1 [Homo
sapiens]
Length = 418
Score = 119 bits (298), Expect = 2e-27
Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 43 EKIQIVSQMVELVENRTRQVDSHVELFEAQQ-ELG-------DTAGNSGKAGADRPKGEA 94
+ +Q +QM E RT + + E F+ +LG +T G S + +
Sbjct: 231 QAVQATAQMKE--GRRTSSLKASYEAFKNNDFQLGKEFSMARETVGYSSSSALMTTLTQN 288
Query: 95 AAQADKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREA 154
A+ + + + + NN++ SS+ S ++ +
Sbjct: 289 ASSSAADSRSGRKSKNNNKSSSQQSSSSSSSSSLSSCSSSSTVVQEISQQTTVVPESDSN 348
Query: 155 SPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 212
S D DPNEP YC+CNQVSYGEM+GCDN +CPIEWFH+ CVGL PKGKWYCP+C
Sbjct: 349 SQVDWTYDPNEPRYCICNQVSYGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 406
Score = 35.8 bits (81), Expect = 0.033
Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 1 MEILKELDECYERFSRETDGAQKRR------MLHCVQRALIRSQELGDEKIQIVSQMVEL 54
+++ +D+ +R S A+K + + +++ ++ E DEK+Q+ +Q+ +L
Sbjct: 30 LQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYDL 89
Query: 55 VENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNEN 114
V+ R++D + F+ + E D AG + +R E + N+ + E
Sbjct: 90 VDRHLRKLDQELAKFKMELE-ADNAGIT--EILERRSLELDTPSQPVNNHHAHSHTPVEK 146
Query: 115 RE-NASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAERE 153
R+ N +S+H D EKK K+ + A +E
Sbjct: 147 RKYNPTSHHTTTDHI----PEKKFKSEALLSTLTSDASKE 182
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 51.6 bits (122), Expect = 6e-07
Identities = 53/199 (26%), Positives = 80/199 (40%), Gaps = 43/199 (21%)
Query: 45 IQIVSQMVELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRPKGEAAA-QADKPNS 103
+ +V MV E V + +A+ + G G +PKG A KP
Sbjct: 234 VAVVESMVTATEVAPPPPPVEVPIRKAKTKEG-----KGPNARRKPKGSPRVPDAKKPKP 288
Query: 104 KR------------SRRQRNNENRENASSNHDHDDGA------------SGTPKEKKAKT 139
K+ S+R+R++ ++ D DD + + KK +T
Sbjct: 289 KKVAPLKIKLGGFGSKRKRSSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRT 348
Query: 140 SKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG 198
+KKKK K E E + D + + YC +C Q GE+I CD CP +H C+
Sbjct: 349 TKKKK----KGEEEVTAVD-GYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHMVCLD 398
Query: 199 --LNHKPKGKWYCPKCRGE 215
+ P+GKW CP C E
Sbjct: 399 PDMEKAPEGKWSCPHCEKE 417
Score = 32.7 bits (73), Expect = 0.28
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 177 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 212
GE++ CD CP +H C+ L P G+W CP+C
Sbjct: 459 GELLCCDT--CPSS-YHIHCLNPPLPEIPNGEWLCPRC 493
Score = 31.2 bits (69), Expect = 0.81
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 101 PNSKRSRRQRNNENRENASSNHD---------------HDDGASGTPKEKKAKT--SKKK 143
P SKR +++R R+ S+ + +G+ TP +KK K KK+
Sbjct: 66 PKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKE 125
Query: 144 KRSKAKAEREASPADLPIDPNEP 166
K+SK+K + E D D EP
Sbjct: 126 KKSKSKRKEEEEEEDDDDDSKEP 148
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 164 NEPTYCLCNQVSYG-EMIGCDNDECPIEWFHFSCVGLNHKPKG---KWYCPKCRGENEKT 219
N P YC+C + MIGCDN EWFH C+ + K +WYC +CR ++ K
Sbjct: 24 NAPIYCICRKPDINCFMIGCDNCN---EWFHGDCIRITEKMAKAIREWYCRECREKDPKL 80
Query: 220 MDKALEKSKKERAYN 234
+ K +ER N
Sbjct: 81 EIRYRHKKSRERDGN 95
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 164 NEPTYCLCNQVSYG-EMIGCDNDECPIEWFHFSCVGLNHKPKG---KWYCPKCRGENEKT 219
N P YC+C + MIGCDN EWFH C+ + K +WYC +CR ++ K
Sbjct: 24 NAPIYCICRKPDINCFMIGCDNCN---EWFHGDCIRITEKMAKAIREWYCRECREKDPKL 80
Query: 220 MDKALEKSKKERAYN 234
+ K +ER N
Sbjct: 81 EIRYRHKKSRERDGN 95
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 49.7 bits (117), Expect = 2e-06
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 128 ASGTPKEKKAKTSK-KKKRSKAKAEREASPADLPIDPNEPTYCL-CNQVSYGEMIGCDND 185
A + E+KAK +K K+KR K K E + D YC C GE++ CD
Sbjct: 1291 ACASTNEEKAKNAKLKQKRRKIKTEPKQMHED---------YCFQCGDG--GELVMCDKK 1339
Query: 186 ECPIEWFHFSCVGLNHKPKGKWYCP 210
+CP + +H C+ L P GKW CP
Sbjct: 1340 DCP-KAYHLLCLNLTQPPYGKWECP 1363
Score = 35.8 bits (81), Expect = 0.033
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 100 KPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADL 159
KP KRSR + E +S+ D D S + + K+ A A+ + S
Sbjct: 628 KPLKKRSRASTDVEM--TSSAYRDTSDSDSRGLSDLQVGFGKQVDSPSATADADVSDVQ- 684
Query: 160 PIDPN----------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYC 209
+D + + T C + S +I C+ + C + FH C+GL P K+ C
Sbjct: 685 SMDSSLSRRGTGMSKKDTVCQICESSGDSLIPCEGECC--KHFHLECLGLASLPDSKFIC 742
Query: 210 PKCR 213
+C+
Sbjct: 743 MECK 746
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 133 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 192
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 193 HFSCVGLNHKPKGKWYCP 210
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 53 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 107
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 108 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 167
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 168 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 212
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 133 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 192
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 193 HFSCVGLNHKPKGKWYCP 210
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 53 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 107
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 108 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 167
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 168 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 212
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 133 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 192
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 193 HFSCVGLNHKPKGKWYCP 210
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 53 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 107
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 108 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 167
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 168 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 212
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 47.0 bits (110), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 133 KEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWF 192
+EK KT KK +R +AK E + D E C G+++ CD C + +
Sbjct: 1215 EEKGKKTKKKTRRRRAKGEGKRQSED------ECFRC----GDGGQLVLCDRKFCT-KAY 1263
Query: 193 HFSCVGLNHKPKGKWYCP 210
H SC+GL +P GKW CP
Sbjct: 1264 HLSCLGLGKRPFGKWECP 1281
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 53 ELVENRTRQVDSHVELFEAQQELGDTAGNSGKAGADRP-----KGEAAAQADKPNSKRSR 107
+ + ++T + S+ + EA L A + A +P + AA + SK S
Sbjct: 560 DTITDKTARTSSY-KAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFSKSSS 618
Query: 108 RQRNNENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPT 167
+ E + S D S +P E +T + S K+ER + E
Sbjct: 619 PSASLTENEVSDSPGDEP---SESPYESADETQTEVSVSSKKSERGVTAK------KEYV 669
Query: 168 YCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKC 212
LC + G ++ C+ C FH +C+GL+ +P+G++ C +C
Sbjct: 670 CQLCEKP--GSLLLCEGPCCGA--FHLACLGLSRRPEGRFTCSEC 710
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ C++ CP FH C+ + P G W+C CR
Sbjct: 841 GSLLCCES--CPAA-FHPDCLNIE-MPDGSWFCNDCR 873
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 47.0 bits (110), Expect = 1e-05
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 99 DKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAK---TSKKKKRSKA------- 148
D +++R+ ++R + ++S+ H D ++ K+KK S K++S+
Sbjct: 29 DPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYY 88
Query: 149 -KAEREASPADL-PIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 205
K P D+ P D YC +C++ G+++ C+ CP +H C+ L +P+G
Sbjct: 89 MKQPLTTDPVDVVPQDGRNDFYCWVCHRE--GQVLCCEL--CP-RVYHAKCLRLTSEPEG 143
Query: 206 KWYCPKCR----GENEKTMDKAL 224
W+CP+C E +T KA+
Sbjct: 144 DWFCPECEKITVAECIETQSKAM 166
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 47.0 bits (110), Expect = 1e-05
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 99 DKPNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAK---TSKKKKRSKA------- 148
D +++R+ ++R + ++S+ H D ++ K+KK S K++S+
Sbjct: 29 DPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYY 88
Query: 149 -KAEREASPADL-PIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKG 205
K P D+ P D YC +C++ G+++ C+ CP +H C+ L +P+G
Sbjct: 89 MKQPLTTDPVDVVPQDGRNDFYCWVCHRE--GQVLCCEL--CP-RVYHAKCLRLTSEPEG 143
Query: 206 KWYCPKCR----GENEKTMDKAL 224
W+CP+C E +T KA+
Sbjct: 144 DWFCPECEKITVAECIETQSKAM 166
>gi|189083832 inhibitor of growth family, member 4 isoform 6 [Homo
sapiens]
Length = 179
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 11 YERFSRETDGAQKRRMLHCVQRALIRSQELGDEKIQIVSQMVELVENRTRQVDSHVELFE 70
Y +R +K +L +Q A + +E GD+K+Q+ Q E+V+ R++D+ + FE
Sbjct: 49 YMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFE 108
Query: 71 AQQELGDTAGNSGKAGADRPKGEAAAQADKPNSKRSRRQRNNENRE 116
A + + + + + K + Q +K + R+R + N + E
Sbjct: 109 ADLKEKQIESSDYDSSSSKGKKKGRTQKEK-KAARARSKGKNSDEE 153
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 45.8 bits (107), Expect = 3e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 10/66 (15%)
Query: 171 CNQVSYGE-MIGCDNDECPIEWFHFSCVGLNHKP--KGKWYCPKCRGENEKTMDKALEKS 227
CN+ G MIGCD+ + +W+H+ CVG+ P + +W+CPKC K DK K
Sbjct: 871 CNKPDDGSPMIGCDDCD---DWYHWPCVGIMTAPPEEMQWFCPKCA---NKKKDKK-HKK 923
Query: 228 KKERAY 233
+K RA+
Sbjct: 924 RKHRAH 929
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 113 ENRENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAERE 153
E +E D K++K K K+K+R K K ERE
Sbjct: 691 EEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKRERE 731
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 45.4 bits (106), Expect = 4e-05
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 61 QVDSHVELFEAQQELGDTAG-----NSGKAGADRPKGEAAAQAD-KPNSKRSRRQRNNEN 114
QV V + +A+ + G G K G + KG+ A + ++R++ + +
Sbjct: 232 QVPQPVPIRKAKTKEGKGPGVRKKIKGSKDGKKKGKGKKTAGLKFRFGGISNKRKKGSSS 291
Query: 115 RENASSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQ 173
E+ D D + + + ++ K+SK + +++ + + YC +C Q
Sbjct: 292 EEDEREESDFDSASIHSASVRSECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQ 351
Query: 174 VSYGEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKCRGE 215
GE+I CD CP +H C+ L P+GKW CP C E
Sbjct: 352 G--GEIILCDT--CP-RAYHLVCLDPELEKAPEGKWSCPHCEKE 390
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 90 PKGEAAAQADKPNSKRSRRQRNNENRENASSNHD-----HDDGASGTPKEKKAKTSKKKK 144
PK + + + K R+++ N E + + D +G+ +P +KK K K KK
Sbjct: 48 PKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKK 107
Query: 145 RSKAKAEREASPAD 158
KAK +++ D
Sbjct: 108 EKKAKRKKKDEDED 121
Score = 32.3 bits (72), Expect = 0.36
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 177 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 212
GE++ CD CP +H C+ L P G+W CP+C
Sbjct: 426 GELLCCD--ACPSS-YHLHCLNPPLPEIPNGEWLCPRC 460
Score = 28.1 bits (61), Expect = 6.8
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 99 DKPNSKRSRRQRNN----ENRENAS--SNHDHDDGASGTPKEKKAKTSKKKKRSKAKAER 152
+K KR +++ +N EN E+ S + D + K+KK K K+KK + K +
Sbjct: 59 NKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDE 118
Query: 153 EASPAD 158
+ D
Sbjct: 119 DEDDND 124
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 45.1 bits (105), Expect = 5e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 83 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 140
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 297 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 353
Query: 141 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 198
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 354 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 408
Query: 199 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 230
L+ P+GKW CP C E + K E+ +E
Sbjct: 409 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 441
Score = 31.6 bits (70), Expect = 0.62
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 119 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 177
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 466
Query: 178 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 212
E++ CD I +H C+ L P G+W CP+C
Sbjct: 467 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 45.1 bits (105), Expect = 5e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 83 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 140
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 297 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 353
Query: 141 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 198
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 354 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 408
Query: 199 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 230
L+ P+GKW CP C E + K E+ +E
Sbjct: 409 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 441
Score = 31.6 bits (70), Expect = 0.62
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 119 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 177
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 419 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 466
Query: 178 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 212
E++ CD I +H C+ L P G+W CP+C
Sbjct: 467 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 500
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 45.1 bits (105), Expect = 5e-05
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 83 GKAGADRPKGEAAA-QADK-PNSKRSRRQRNNENRENASSNHDHDDGASGTPKEKKAKTS 140
G G R KG + Q+D+ P + ++ + +AS DG T K K+ +
Sbjct: 356 GLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGR---PDGPVRTKKLKRGRPG 412
Query: 141 KKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYGEMIGCDNDECPIEWFHFSCVG- 198
+KKK+ + + YC +C Q GE+I CD CP +H C+
Sbjct: 413 RKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQG--GEIILCDT--CP-RAYHLVCLDP 467
Query: 199 -LNHKPKGKWYCPKCRGENEKTMDKALEKSKKE 230
L+ P+GKW CP C E + K E+ +E
Sbjct: 468 ELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEE 500
Score = 31.6 bits (70), Expect = 0.62
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 119 SSNHDHDDGASGTPKEKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYC-LCNQVSYG 177
S H +G KE++ + ++ + K E + + YC +C G
Sbjct: 478 SCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEED----------DHMEYCRVCKDG--G 525
Query: 178 EMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 212
E++ CD I +H C+ L P G+W CP+C
Sbjct: 526 ELLCCD---ACISSYHIHCLNPPLPDIPNGEWLCPRC 559
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 134 EKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFH 193
E+K+K KKK++ K + + E + E C G+++ C CP + +H
Sbjct: 1824 EEKSKKFKKKQQGKRRTQGEITKE------REDECFSCGDA--GQLVSCKKPGCP-KVYH 1874
Query: 194 FSCVGLNHKPKGKWYCP 210
C+ L +P GKW CP
Sbjct: 1875 ADCLNLTKRPAGKWECP 1891
Score = 38.5 bits (88), Expect = 0.005
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 99 DKPNSKRSRRQRNNENRENASSNHDHDD---GASGTPKEKKAKTSKKKKRSKAKAEREAS 155
DKP ++ +R + + N D G+ G + TS K+ +
Sbjct: 1197 DKPRKRKRQRHAAAKMQCKKVKNDDSSKEIPGSEGELMPHRTATSPKETVEEGVEHDPGM 1256
Query: 156 PADLPIDPN-------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY 208
PA + + C N GE++ C+ C FH C+GL P+GK+
Sbjct: 1257 PASKKMQGERGGGAALKENVCQ-NCEKLGELLLCEAQCCGA--FHLECLGLTEMPRGKFI 1313
Query: 209 CPKCR 213
C +CR
Sbjct: 1314 CNECR 1318
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ CD+ CP FH C+ ++ P+G WYC C+
Sbjct: 1448 GSLLCCDS--CPAA-FHRECLNIDI-PEGNWYCNDCK 1480
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 43.9 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 134 EKKAKTSKKKKRSKAKAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFH 193
E+K+K KKK++ K + + E + E C G+++ C CP + +H
Sbjct: 2093 EEKSKKFKKKQQGKRRTQGEITKE------REDECFSCGDA--GQLVSCKKPGCP-KVYH 2143
Query: 194 FSCVGLNHKPKGKWYCP 210
C+ L +P GKW CP
Sbjct: 2144 ADCLNLTKRPAGKWECP 2160
Score = 38.5 bits (88), Expect = 0.005
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 99 DKPNSKRSRRQRNNENRENASSNHDHDD---GASGTPKEKKAKTSKKKKRSKAKAEREAS 155
DKP ++ +R + + N D G+ G + TS K+ +
Sbjct: 1466 DKPRKRKRQRHAAAKMQCKKVKNDDSSKEIPGSEGELMPHRTATSPKETVEEGVEHDPGM 1525
Query: 156 PADLPIDPN-------EPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY 208
PA + + C N GE++ C+ C FH C+GL P+GK+
Sbjct: 1526 PASKKMQGERGGGAALKENVCQ-NCEKLGELLLCEAQCCGA--FHLECLGLTEMPRGKFI 1582
Query: 209 CPKCR 213
C +CR
Sbjct: 1583 CNECR 1587
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 177 GEMIGCDNDECPIEWFHFSCVGLNHKPKGKWYCPKCR 213
G ++ CD+ CP FH C+ ++ P+G WYC C+
Sbjct: 1717 GSLLCCDS--CPAA-FHRECLNIDI-PEGNWYCNDCK 1749
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,366,723
Number of Sequences: 37866
Number of extensions: 445875
Number of successful extensions: 4383
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 1281
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.