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Search of human proteins with 34808710
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
(591 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34808710 solute carrier family 19 member 1 [Homo sapiens] 1179 0.0
gi|13376856 solute carrier family 19, member 3 [Homo sapiens] 360 2e-99
gi|27734719 solute carrier family 19, member 2 [Homo sapiens] 341 1e-93
gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens] 39 0.013
gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens] 39 0.013
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.013
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.013
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 39 0.013
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.051
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 35 0.25
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 35 0.25
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 35 0.25
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 35 0.25
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 35 0.25
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.25
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 35 0.25
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 35 0.25
gi|19924099 synapsin I isoform Ia [Homo sapiens] 35 0.25
gi|19924097 synapsin I isoform Ib [Homo sapiens] 35 0.25
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 35 0.25
gi|33563376 TBC1 domain family, member 16 [Homo sapiens] 34 0.33
gi|50428940 mediator complex subunit 25 [Homo sapiens] 34 0.33
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 34 0.33
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 34 0.33
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 34 0.33
gi|8923842 forkhead box J2 [Homo sapiens] 34 0.33
gi|153792074 proline rich 12 [Homo sapiens] 34 0.33
gi|23397642 GREB1 protein isoform a [Homo sapiens] 34 0.43
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 34 0.43
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 34 0.43
>gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
Length = 591
Score = 1179 bits (3049), Expect = 0.0
Identities = 591/591 (100%), Positives = 591/591 (100%)
Query: 1 MVPSSPAVEKQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFT 60
MVPSSPAVEKQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFT
Sbjct: 1 MVPSSPAVEKQVPVEPGPDPELRSWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFT 60
Query: 61 REQVTNEITPVLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQ 120
REQVTNEITPVLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQ
Sbjct: 61 REQVTNEITPVLSYSYLAVLVPVFLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQ 120
Query: 121 LMELFYSVTMAARIAYSSYIFSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRV 180
LMELFYSVTMAARIAYSSYIFSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRV
Sbjct: 121 LMELFYSVTMAARIAYSSYIFSLVRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRV 180
Query: 181 SFSTLNYISLAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGH 240
SFSTLNYISLAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGH
Sbjct: 181 SFSTLNYISLAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGH 240
Query: 241 ALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILWNEVDPTTN 300
ALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILWNEVDPTTN
Sbjct: 241 ALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILWNEVDPTTN 300
Query: 301 SARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPS 360
SARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPS
Sbjct: 301 SARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPS 360
Query: 361 SIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSD 420
SIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSD
Sbjct: 361 SIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVSD 420
Query: 421 VRGLGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHHPRQPPAQGLRSAAEEKA 480
VRGLGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHHPRQPPAQGLRSAAEEKA
Sbjct: 421 VRGLGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHHPRQPPAQGLRSAAEEKA 480
Query: 481 AQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPV 540
AQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPV
Sbjct: 481 AQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPV 540
Query: 541 TTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSDGVQNVNQ 591
TTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSDGVQNVNQ
Sbjct: 541 TTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSDGVQNVNQ 591
>gi|13376856 solute carrier family 19, member 3 [Homo sapiens]
Length = 496
Score = 360 bits (925), Expect = 2e-99
Identities = 192/452 (42%), Positives = 279/452 (61%), Gaps = 28/452 (6%)
Query: 24 SWRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEITPVLSYSYLAVLVPV 83
SW + LC +GF + +RP E F+ PYL GPDKN T ++TNEI PV +YSYL +L+PV
Sbjct: 11 SWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSAEITNEIFPVWTYSYLVLLLPV 70
Query: 84 FLLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVTMAARIAYSSYIFSL 143
F+LTDY+RY PV++LQG+SF+ WLLLL G V MQ++E FY + AA +AY +YI+S+
Sbjct: 71 FVLTDYVRYKPVIILQGISFIITWLLLLFGQGVKTMQVVEFFYGMVTAAEVAYYAYIYSV 130
Query: 144 VRPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFL 203
V P YQRV+GY R+ L SVL QLLV++ +S+ LN ISLA ++ + + +LFL
Sbjct: 131 VSPEHYQRVSGYCRSVTLAAYTAGSVLAQLLVSLANMSYFYLNVISLASVSVAFLFSLFL 190
Query: 204 KRPKRSLFFNRDDRGRCETSAS---ELERMNPG--PG--------------GKLGHALRV 244
PK+S+FF+ + S+S LE + G PG GKL
Sbjct: 191 PMPKKSMFFHAKPSREIKKSSSVNPVLEETHEGEAPGCEEQKPTSEILSTSGKLNKGQLN 250
Query: 245 ACGDS-----VLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILWNEVDPTT 299
+ S V + ++L + +L WSLWW F +AG+ V+ YV ILW+ P+
Sbjct: 251 SLKPSNVTVDVFVQWFQDLKECYSSKRLFYWSLWWAFATAGFNQVLNYVQILWDYKAPSQ 310
Query: 300 NSARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHP 359
+S+ +YNGA +A +T GA+ +FA G+VK+ W +L + + AG +FL+ +T
Sbjct: 311 DSS-IYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALVVFSVVNAGSLFLMHYT--- 366
Query: 360 SSIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKTIITFIVS 419
++IW CYA +++F+ SY L+ IA FQIA +L+ E ALVFG+NTF A +++TI+T IV
Sbjct: 367 ANIWACYAGYLIFKSSYMLLITIAVFQIAVNLNVERYALVFGINTFIALVIQTIMTVIVV 426
Query: 420 DVRGLGLPVRKQFQLYSVYFLILSIIYFLGAM 451
D RGL LPV QF +Y YF +++ I+ + +M
Sbjct: 427 DQRGLNLPVSIQFLVYGSYFAVIAGIFLMRSM 458
>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
Length = 497
Score = 341 bits (875), Expect = 1e-93
Identities = 185/473 (39%), Positives = 265/473 (56%), Gaps = 45/473 (9%)
Query: 25 WRHLVCYLCFYGFMAQIRPGESFITPYLLGPDKNFTREQVTNEITPVLSYSYLAVLVPVF 84
W LC YGF A +RP E F+TPYLLGPDKN T +V NEI PV +YSYL +L PVF
Sbjct: 30 WFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVF 89
Query: 85 LLTDYLRYTPVLLLQGLSFVSVWLLLLLGHSVAHMQLMELFYSVTMAARIAYSSYIFSLV 144
L TDYLRY PV+LLQGLS + W +LL + +Q +E FY + A IAY SYI+S+V
Sbjct: 90 LATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVV 149
Query: 145 RPARYQRVAGYSRAAVLLGVFTSSVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFLK 204
YQ+V Y R+A L+G SVLGQ+LV+V S +LN ISL ++ + +A FL
Sbjct: 150 DLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLP 209
Query: 205 RPKRSLFFN--------------------------------RDDRGRCETSASELERMNP 232
P++SLFF+ D + + E P
Sbjct: 210 MPQKSLFFHHIPSTCQRVNGIKVQNGGIVTDTPASNHLPGWEDIESKIPLNMEEPPVEEP 269
Query: 233 GPGGKLGHALRVACGDSVLARMLRELGDSLRRPQLRLWSLWWVFNSAGYYLVVYYVHILW 292
P L+V D ++ R L WS+WW ++ GY+ VV Y LW
Sbjct: 270 EPKPDRLLVLKVLWNDFLMCYSSR---------PLLCWSVWWALSTCGYFQVVNYTQGLW 320
Query: 293 NEVDPTTNSARVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFL 352
+V P+ +A +YNG +A STLLGA+ FA G++KI W+ W ++ ++ + A V++
Sbjct: 321 EKVMPSRYAA-IYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYI 379
Query: 353 LAHTRHPSSIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVFGVNTFFATIVKT 412
+ +IW+CYA++V+FR Y L+ IATFQIA++LS E ALVFGVNTF A ++T
Sbjct: 380 MDTV---GNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQT 436
Query: 413 IITFIVSDVRGLGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHHPR 465
++T IV D GLGL + QF +Y+ YF ++++++ + ++ C++ P+
Sbjct: 437 LLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQ 489
>gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens]
Length = 96
Score = 38.9 bits (89), Expect = 0.013
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 397 ALVFGVNTFFATIVKTIITFIVSDVRGLGLPV 428
AL FG+N F A +++ I+T V D +GLGLPV
Sbjct: 5 ALTFGINPFIALMIQPIVTMTVVDNQGLGLPV 36
>gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens]
Length = 150
Score = 38.9 bits (89), Expect = 0.013
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 397 ALVFGVNTFFATIVKTIITFIVSDVRGLGLPV 428
AL FG+N F A +++ I+T V D +GLGLPV
Sbjct: 5 ALTFGINPFIALMIQPIVTMTVVDNQGLGLPV 36
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 38.9 bits (89), Expect = 0.013
Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 494 LQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQA 553
+Q SPP SP S A P+ + P L P+P A+ +SP TP P QA
Sbjct: 448 VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP------QA 501
Query: 554 SGPEAADETCPQLA----VHPPGVSKLGLQCLPS 583
P AA QLA PP ++ LQ LPS
Sbjct: 502 PPPLAAPPL--QLAKPPPQAPPALATPPLQALPS 533
Score = 32.3 bits (72), Expect = 1.3
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 499 SPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSP 545
SPPLSP + P +L P L P+P A+ LSP+ TPSP
Sbjct: 383 SPPLSPLATPPPQAPPALAL----PPLQAPPSPPASPPLSPLATPSP 425
Score = 30.4 bits (67), Expect = 4.8
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 463 HPRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQR-QS 521
HP QP +GL++ + LG L + SP +L + P +L S
Sbjct: 268 HPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHS 327
Query: 522 DPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASGPEAA 559
Q P SP PS TL S A+ P A
Sbjct: 328 SSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQA 365
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.9 bits (89), Expect = 0.013
Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 494 LQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQA 553
+Q SPP SP S A P+ + P L P+P A+ +SP TP P QA
Sbjct: 409 VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP------QA 462
Query: 554 SGPEAADETCPQLA----VHPPGVSKLGLQCLPS 583
P AA QLA PP ++ LQ LPS
Sbjct: 463 PPPLAAPPL--QLAKPPPQAPPALATPPLQALPS 494
Score = 32.3 bits (72), Expect = 1.3
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 499 SPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSP 545
SPPLSP + P +L P L P+P A+ LSP+ TPSP
Sbjct: 344 SPPLSPLATPPPQAPPALAL----PPLQAPPSPPASPPLSPLATPSP 386
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 38.9 bits (89), Expect = 0.013
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 463 HPRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAV----GPASLEQ 518
H Q P +G+ S + ++ ++ + L LQ QS PL EDSL ++ P E
Sbjct: 661 HSPQSPPEGMHSQSPLQSPESAPEGEDSLSPLQIPQS-PLEGEDSLSSLHFPQSPPEWED 719
Query: 519 RQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKL 576
S + Q P PQ +F S + +P S S P++ E+ PQ P S L
Sbjct: 720 SLSPLHFPQFP-PQGEDFQSSLQSPVSICSSSTSLSLPQSFPES-PQSPPEGPAQSPL 775
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.0 bits (84), Expect = 0.051
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 464 PRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDP 523
P PPA S + +QA LQ SPP SP S A P + P
Sbjct: 676 PFSPPASPPVSPSATPPSQA--PPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 733
Query: 524 YLAQAPAPQAAEFLSPVTTPSPCT---LCSAQASGPEAADETCPQLAV------HPPGVS 574
L P+P A+ +SP TP P L + P + + P + PP ++
Sbjct: 734 PLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALA 793
Query: 575 KLGLQCLPS 583
LQ LPS
Sbjct: 794 TPPLQALPS 802
Score = 35.4 bits (80), Expect = 0.15
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 494 LQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQA 553
+Q SPP SP S A P+ + P L P+P A+ +SP TP P QA
Sbjct: 673 VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP------QA 726
Query: 554 SGPEAADETCPQLAVHP 570
P AA P L V P
Sbjct: 727 PPPLAA----PPLQVPP 739
Score = 34.3 bits (77), Expect = 0.33
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 494 LQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSP 545
LQ SPPLSP A P + P L P+P A+ LSP+ TPSP
Sbjct: 603 LQGLPSPPLSPL----ATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSP 650
Score = 32.7 bits (73), Expect = 0.96
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 21/96 (21%)
Query: 498 QSPPLS----PEDSLGAVGPASLEQRQSD---PYLAQAPAPQAAEFL---SPVTTPSPCT 547
Q+PP S P ++L ++ P L+ + P+L P P SP+TTP P T
Sbjct: 524 QTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPET 583
Query: 548 LCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPS 583
S P+A PP ++ LQ LPS
Sbjct: 584 PSSIATPPPQA-----------PPALASPPLQGLPS 608
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 34.7 bits (78), Expect = 0.25
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASG 555
P ++ P +P++ PA ++ P + P P +E +P TT P T+
Sbjct: 689 PKETAPTTPKE------PAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTI------- 735
Query: 556 PEAADETCPQLAVHP 570
++ DE+ P+L+ P
Sbjct: 736 HKSPDESTPELSAEP 750
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 34.7 bits (78), Expect = 0.25
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASG 555
P ++ P +P++ PA ++ P + P P +E +P TT P T+
Sbjct: 730 PKETAPTTPKE------PAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTI------- 776
Query: 556 PEAADETCPQLAVHP 570
++ DE+ P+L+ P
Sbjct: 777 HKSPDESTPELSAEP 791
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 34.7 bits (78), Expect = 0.25
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASG 555
P ++ P +P++ PA ++ P + P P +E +P TT P T+
Sbjct: 782 PKETAPTTPKE------PAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTI------- 828
Query: 556 PEAADETCPQLAVHP 570
++ DE+ P+L+ P
Sbjct: 829 HKSPDESTPELSAEP 843
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 34.7 bits (78), Expect = 0.25
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASG 555
P ++ P +P++ PA ++ P + P P +E +P TT P T+
Sbjct: 823 PKETAPTTPKE------PAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTI------- 869
Query: 556 PEAADETCPQLAVHP 570
++ DE+ P+L+ P
Sbjct: 870 HKSPDESTPELSAEP 884
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 34.7 bits (78), Expect = 0.25
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 489 KGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTL 548
+GLG ++P Q P SP L G +S + +P + + QA+E P+ P TL
Sbjct: 375 EGLGTVRPEQDPAKSPGSPLLLRGLSSGDVAAPEPIMGE--PGQASEEFQPLARPWRATL 432
Query: 549 CSAQA---SGPEAADETCPQLAVHPPGVSKLGLQCLPSDGVQ 587
+ + P ETC V P + G LP +G +
Sbjct: 433 AAEELVSHRSPGEPQETCSGTEVERPRQTGPG---LPREGAR 471
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 34.7 bits (78), Expect = 0.25
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 474 SAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQA 533
++AE K+ ALS++ + LG + +SP +P L P S+ + L +P P
Sbjct: 120 NSAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGSVVSPELQTPL-PSPEPSK 178
Query: 534 AEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGV 573
+S P +C +Q P + E V P V
Sbjct: 179 PASVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPVSPESV 218
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 34.7 bits (78), Expect = 0.25
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 454 GLRHCQRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSL--GAV 511
G ++ +G +PRQP L +A A A + G GG Q P + P +L G +
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-PGIPPYGTLPPGRM 858
Query: 512 GPASLEQRQSDPYLAQAPAPQAAEFLSP 539
AS+ R P +A P PQ + P
Sbjct: 859 SHASMGNRPYGPNMANMP-PQVGSGMCP 885
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 34.7 bits (78), Expect = 0.25
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 454 GLRHCQRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSL--GAV 511
G ++ +G +PRQP L +A A A + G GG Q P + P +L G +
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-PGIPPYGTLPPGRM 858
Query: 512 GPASLEQRQSDPYLAQAPAPQAAEFLSP 539
AS+ R P +A P PQ + P
Sbjct: 859 SHASMGNRPYGPNMANMP-PQVGSGMCP 885
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 34.7 bits (78), Expect = 0.25
Identities = 38/135 (28%), Positives = 43/135 (31%), Gaps = 23/135 (17%)
Query: 459 QRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLG-GLQPAQSPPLSPEDSLGAVGPASL- 516
QR P P Q AA Q + G G PA PP SP A P +
Sbjct: 506 QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATR 565
Query: 517 -------------------EQRQSDPYLAQAPA--PQAAEFLSPVTTPSPCTLCSAQASG 555
+QRQ P PA + A PV P T + SG
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSG 625
Query: 556 PEAADETCPQLAVHP 570
P A PQLA P
Sbjct: 626 PGPAGRPKPQLAQKP 640
Score = 30.8 bits (68), Expect = 3.7
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 468 PAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQ 527
P +G A L Q PAQ P P+ GP QRQ P L Q
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGP--QRQGPP-LQQ 483
Query: 528 APAPQAAEFLS----PVTTPSPCTLCSAQASGPEAADETCP 564
P PQ + LS P +P P L S ++ + A + P
Sbjct: 484 RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 34.7 bits (78), Expect = 0.25
Identities = 38/135 (28%), Positives = 43/135 (31%), Gaps = 23/135 (17%)
Query: 459 QRGHHPRQPPAQGLRSAAEEKAAQALSVQDKGLG-GLQPAQSPPLSPEDSLGAVGPASL- 516
QR P P Q AA Q + G G PA PP SP A P +
Sbjct: 506 QRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATR 565
Query: 517 -------------------EQRQSDPYLAQAPA--PQAAEFLSPVTTPSPCTLCSAQASG 555
+QRQ P PA + A PV P T + SG
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSG 625
Query: 556 PEAADETCPQLAVHP 570
P A PQLA P
Sbjct: 626 PGPAGRPKPQLAQKP 640
Score = 30.8 bits (68), Expect = 3.7
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 468 PAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQ 527
P +G A L Q PAQ P P+ GP QRQ P L Q
Sbjct: 428 PGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRP-PPQGGPPQPGPGP--QRQGPP-LQQ 483
Query: 528 APAPQAAEFLS----PVTTPSPCTLCSAQASGPEAADETCP 564
P PQ + LS P +P P L S ++ + A + P
Sbjct: 484 RPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 34.7 bits (78), Expect = 0.25
Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 468 PAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQ 527
P G + E A GLG L P PPLS +L A+ A L P
Sbjct: 633 PTAGDGEGSAEGAGGPSGEPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPP---- 688
Query: 528 APAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLG 577
T P PC L + Q P ++ T A PG S LG
Sbjct: 689 -----------SGTPPQPCVLSAPQPGPPTSSVTT----ATTDPGASSLG 723
>gi|33563376 TBC1 domain family, member 16 [Homo sapiens]
Length = 767
Score = 34.3 bits (77), Expect = 0.33
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 477 EEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDP-----------YL 525
EEK AQ L G+ G QPA P SP L V P + + +P L
Sbjct: 161 EEKLAQGL-----GVDGAQPASQPACSPSGILSTVSPQDVTEEGREPRPEAGEEDGSLEL 215
Query: 526 AQAPAPQAAEFLSPVTT-PSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSD 584
+ + + F S T SP L A+ E+ + PP S GL+ S+
Sbjct: 216 SAEGVSRDSSFDSDSDTFSSPFCLSPISAALAESRGSVFLESDSSPPSSSDAGLRFPDSN 275
Query: 585 GV 586
G+
Sbjct: 276 GL 277
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 34.3 bits (77), Expect = 0.33
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 7/131 (5%)
Query: 464 PRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGP----ASLEQR 519
P Q G SAA+ A A+ GL P SP + + VGP A Q
Sbjct: 269 PPQYQVPGNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQL 328
Query: 520 QSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQ 579
P A P P + L P +AQ P A P V P ++LG
Sbjct: 329 PPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPG-GVSGPSPAQLGAP 387
Query: 580 CLPSDGVQNVN 590
L G Q+V+
Sbjct: 388 AL--GGQQSVS 396
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 34.3 bits (77), Expect = 0.33
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 501 PLSPEDSLGAVG-PA-------SLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQ 552
PL +GA+G PA + Q+ P AQ A+ SP T+P+ L SA
Sbjct: 280 PLQTSTPIGAMGTPAPKTAFSFNTSDTQAQPSAAQEQVVPASVPTSPTTSPTVTVLASAP 339
Query: 553 ASGPEAADETCP-------QLAVHPP 571
A P+ A P Q A HPP
Sbjct: 340 ALAPQVATSYTPSSTTHIAQGAPHPP 365
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.33
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 501 PLSPEDSLGAVG-PA-------SLEQRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQ 552
PL +GA+G PA + Q+ P AQ A+ SP T+P+ L SA
Sbjct: 280 PLQTSTPIGAMGTPAPKTAFSFNTSDTQAQPSAAQEQVVPASVPTSPTTSPTVTVLASAP 339
Query: 553 ASGPEAADETCP-------QLAVHPP 571
A P+ A P Q A HPP
Sbjct: 340 ALAPQVATSYTPSSTTHIAQGAPHPP 365
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 34.3 bits (77), Expect = 0.33
Identities = 30/68 (44%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLA--QAPAPQAAE--FLSPVTTPSPCTLCSA 551
PA +PP P L A PA L S P LA QAP P +A L+PV TP L
Sbjct: 286 PASAPPSGPVP-LSAPAPAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTP---VLAPM 341
Query: 552 QASGPEAA 559
AS P AA
Sbjct: 342 PASTPPAA 349
Score = 30.8 bits (68), Expect = 3.7
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 496 PAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPAPQAAEFLSPV---TTPSPCTLCSAQ 552
PA SPPL+P +L A P S+ SD P +A L PV PS SA
Sbjct: 246 PAPSPPLAPVPAL-APAPPSVPTLISD----SNPLSVSASVLVPVPASAPPSGPVPLSAP 300
Query: 553 ASGPEAADETCPQLAV----HPPGVSKLGLQCLPS 583
A P + + P LA+ PP L L +P+
Sbjct: 301 APAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPT 335
>gi|8923842 forkhead box J2 [Homo sapiens]
Length = 574
Score = 34.3 bits (77), Expect = 0.33
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 495 QPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQAPA--PQAAEFLSPVTTPSP--CTLCS 550
Q Q PP P+ P +QS P QAPA P A P+ TPS CT
Sbjct: 291 QQQQPPP--PQQQQQQQQPPQPPPQQSQPQQQQAPAQGPSAVGGAPPLHTPSTDGCTPPG 348
Query: 551 AQASGPEAADETCPQLAVHPP 571
+ +G E P +A+HPP
Sbjct: 349 GKQAGAEGYGPP-PVMAMHPP 368
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.3 bits (77), Expect = 0.33
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 464 PRQPPAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSL------GAVGPASLE 517
P PPA GL S + + L+P+Q+P + G +GPA L
Sbjct: 174 PFSPPANGLLSPHD-------------VLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLG 220
Query: 518 QRQSDPYLAQAPAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQL 566
Q+ PY P P P P+ L ++ ++ AA+++ PQL
Sbjct: 221 PAQTPPYRPGPPDPPP----PPRHLPTQFNLLASSSAAAAAAEQSSPQL 265
>gi|23397642 GREB1 protein isoform a [Homo sapiens]
Length = 1949
Score = 33.9 bits (76), Expect = 0.43
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 465 RQPPAQGLRSAAEEKAAQALSVQDKG--LGGLQPAQSPPLSPEDSLGAVGPASLEQRQSD 522
++ P + RS + + A+ +LS + G LGG AQ L + + P +
Sbjct: 1113 KRSPMKRERSRSHDSASSSLSSKASGSALGGESSAQPTALPQGEHARSPQPRGPAEEGRA 1172
Query: 523 PYLAQAPA-----PQAAEFLSPVTTPSP-CTLCSAQASGPEAADETCPQLA 567
P Q P P A SP TP P C+L + Q S + +C QL+
Sbjct: 1173 PGEKQRPRASQGPPSAISRHSPGPTPQPDCSLRTGQRSVQVSVTSSCSQLS 1223
Score = 31.2 bits (69), Expect = 2.8
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 20/179 (11%)
Query: 424 LGLPVRKQFQLYSVYFLILSIIYFLGAMLDGLRHCQRGHH--PRQPPAQGLRSAAEEKAA 481
L L + + Q + Y+L+ + G + G C +G RQ PA S+
Sbjct: 177 LKLTTQPKKQKHLKYYLVRNA---QGTLTKGPLICWKGSEFRSRQIPASTCSSSLFPALE 233
Query: 482 QALSVQDKGLGGLQPA------QSPPLSPEDSLGA-VGPASLEQRQSDPY-------LAQ 527
+ + + G P+ Q+ P S SL A +GPA + S L
Sbjct: 234 STAAFPSEPVPGTNPSILMGAQQAGPASDHPSLNAAMGPAVFNGKDSPKCQQLAKNNLLA 293
Query: 528 APAPQAAEFLSPVTTPSPCTLCSAQASGPEAADETCPQLAVHPPGVSKLGLQCLPSDGV 586
P P A LS P + S P A D CPQ + G+ C+P G+
Sbjct: 294 LPRPSALGILSNSGPPKKRHKGWSPES-PSAPDGGCPQGGGNRAKYESAGMSCVPQVGL 351
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 468 PAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQ 527
P Q A E++AA G GGL ++ D+ GPA + +R
Sbjct: 205 PVQAAAEAREQEAAPG------GAGGLAAGKASGADERDTRRKAGPAWIVRR-------- 250
Query: 528 APAPQAAEFLSPVTTPSPCTLCSAQASGPEA 558
AE L TP P QA+GPEA
Sbjct: 251 ------AEGLGHEQTPLPAAQAQVQATGPEA 275
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 33.9 bits (76), Expect = 0.43
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 468 PAQGLRSAAEEKAAQALSVQDKGLGGLQPAQSPPLSPEDSLGAVGPASLEQRQSDPYLAQ 527
P Q A E++AA G GGL ++ D+ GPA + +R
Sbjct: 205 PVQAAAEAREQEAAPG------GAGGLAAGKASGADERDTRRKAGPAWIVRR-------- 250
Query: 528 APAPQAAEFLSPVTTPSPCTLCSAQASGPEA 558
AE L TP P QA+GPEA
Sbjct: 251 ------AEGLGHEQTPLPAAQAQVQATGPEA 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,627,043
Number of Sequences: 37866
Number of extensions: 1111945
Number of successful extensions: 5690
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 5404
Number of HSP's gapped (non-prelim): 352
length of query: 591
length of database: 18,247,518
effective HSP length: 108
effective length of query: 483
effective length of database: 14,157,990
effective search space: 6838309170
effective search space used: 6838309170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.