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Search of human proteins with 33636717
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33636717 hypothetical protein LOC80256 [Homo sapiens]
(538 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33636717 hypothetical protein LOC80256 [Homo sapiens] 1117 0.0
gi|154350236 hypothetical protein LOC56204 [Homo sapiens] 250 2e-66
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 62 1e-09
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 62 1e-09
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 62 1e-09
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 57 3e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 57 4e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 1e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 54 4e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 53 6e-07
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 52 1e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 52 1e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 52 1e-06
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 52 1e-06
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 52 1e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 51 2e-06
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 51 2e-06
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 51 2e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 51 2e-06
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 51 2e-06
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 51 2e-06
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 51 2e-06
gi|33286446 opioid growth factor receptor [Homo sapiens] 51 3e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 51 3e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 51 3e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 51 3e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 51 3e-06
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 50 4e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 50 4e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 50 5e-06
>gi|33636717 hypothetical protein LOC80256 [Homo sapiens]
Length = 538
Score = 1117 bits (2888), Expect = 0.0
Identities = 538/538 (100%), Positives = 538/538 (100%)
Query: 1 MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS
Sbjct: 1 MRHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH 120
EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH
Sbjct: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH 120
Query: 121 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPP 180
RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPP
Sbjct: 121 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPP 180
Query: 181 GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT 240
GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT
Sbjct: 181 GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT 240
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP
Sbjct: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
Query: 301 TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR 360
TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR
Sbjct: 301 TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR 360
Query: 361 FAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS 420
FAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS
Sbjct: 361 FAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYS 420
Query: 421 VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRL 480
VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRL
Sbjct: 421 VPKVGTVQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNANPTHRL 480
Query: 481 LCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP 538
LCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP
Sbjct: 481 LCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP 538
>gi|154350236 hypothetical protein LOC56204 [Homo sapiens]
Length = 1076
Score = 250 bits (639), Expect = 2e-66
Identities = 122/225 (54%), Positives = 163/225 (72%), Gaps = 8/225 (3%)
Query: 320 PLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGS 379
P ++ P + P S P S +LLGNFEES+L RF P G ++GFTAE+GASG+
Sbjct: 850 PCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGFTAEVGASGA 909
Query: 380 YCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLNPLGRKGYSVPKVGTVQVTLFNPNQTVV 439
+CP H+TLPV V+F+ VS+ NAP+P++G++ L LG++GY VP GT+QVTLFNPN+TVV
Sbjct: 910 FCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVV 969
Query: 440 KMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEE-----GNANPTH---RLLCYLLHLRFRS 491
KMF+V +D DMPA H TFLR R F VPV +E N H RLL YL+HLRF+S
Sbjct: 970 KMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLRYLIHLRFQS 1029
Query: 492 SRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSP 536
S+SG++ LH D+RLLFSR+S+E+D+G YEL++ TE+P NP++SP
Sbjct: 1030 SKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSP 1074
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 62.0 bits (149), Expect = 1e-09
Identities = 93/352 (26%), Positives = 121/352 (34%), Gaps = 55/352 (15%)
Query: 4 VQAEPSPSSEPE----AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGT 59
V + P P P GP+ P G+ G P G PG SIFSP G
Sbjct: 1137 VLSVPGPEGRPGFAGFPGPAGPKGNLGSK--GERGSPGPKGEKGEPG----SIFSPDGGA 1190
Query: 60 SEPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQH 117
P + + P GP PG G P P P GL G +G G AS
Sbjct: 1191 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP---GDASLG 1247
Query: 118 FSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGG---------- 167
F RG+ G PP PP ++ + + P P G
Sbjct: 1248 FGMRGM-----------PGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 1296
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEH 227
+G+ GE P PPGQ L A++ G+ G+ G R PG G
Sbjct: 1297 KGAKGEVGPPGPPGQFPFDFLQLE--AEMKGEK--GDRGDAGQKGERGEPG-GGGFFGSS 1351
Query: 228 TPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPR--------RRRGSLGHPTAANSSD 279
P PGPPGP P GE+ + + P P+ R+G G P
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPKGES--IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPS 1409
Query: 280 AKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG 327
+ +PGP P P G MG RL R+ L + + +G
Sbjct: 1410 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEG 1461
Score = 43.9 bits (102), Expect = 4e-04
Identities = 81/310 (26%), Positives = 99/310 (31%), Gaps = 56/310 (18%)
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP+ K PG+G R P+ P GP GP F H L ++
Sbjct: 843 PGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPS---------FRHDKLTFIDMEG 888
Query: 131 SVTSS------WTSGAWSPPCPPSNASCNT------LHTRDWASPD-----PGGQGSLGE 173
S G PP PP +++ D P PG +G G
Sbjct: 889 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 948
Query: 174 SPGPAPPGQLHTLDT-----DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHT 228
P PPG SL + G G G R G A P
Sbjct: 949 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 1008
Query: 229 PPGPGPPGP----CPTKRRLLPAGEAPDVSSEEEGPAP---------RRRRGSLGHPTAA 275
P PGPPGP P + P S+ P + G G P A
Sbjct: 1009 PGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAK 1068
Query: 276 NSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPS 335
A P + LPG +E + P GP G R G+R K P + PGL PP
Sbjct: 1069 GEVGADGVPGFPG-LPG-REGIAGPQ--GPKGDR--GSRGEKGDPGKDGVGQPGLPGPP- 1121
Query: 336 ASPVPTPAVS 345
P P VS
Sbjct: 1122 GPPGPVVYVS 1131
Score = 42.7 bits (99), Expect = 8e-04
Identities = 79/307 (25%), Positives = 98/307 (31%), Gaps = 60/307 (19%)
Query: 16 AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEG 75
AGP PP G GL PAG F G+ P + R A +G
Sbjct: 1006 AGPPGPPGPPGPPGPGL-----PAG------------FDDMEGSGGPFWSTARSADGPQG 1048
Query: 76 P---RELKRGPGL----GAR-----EGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
P LK PG+ GA+ +G+P P P G+ GP+GP G R
Sbjct: 1049 PPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG-------SR 1101
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + V G PP P S + P P G+ PGPA P
Sbjct: 1102 GEKGDPGKDGVGQPGLPGPPGPPGPVVYVS--EQDGSVLSVPGPEGRPGFAGFPGPAGP- 1158
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPGPCPT 240
+L S + G P G GS++ + PG GPPGP
Sbjct: 1159 -----KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPY-- 1211
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
P E P R G G + F +PGP P P
Sbjct: 1212 --------GRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP---P 1260
Query: 301 TDCGPMG 307
GP G
Sbjct: 1261 GPPGPPG 1267
Score = 37.0 bits (84), Expect = 0.046
Identities = 95/377 (25%), Positives = 124/377 (32%), Gaps = 58/377 (15%)
Query: 37 SPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEP 96
S G PG +F AG ++P K Q E +++R P + L E
Sbjct: 606 SSRGLELEPGA---GLFVAQAGGADPD---KFQGVIAE--LKVRRDPQVSPMHCLDEEGD 657
Query: 97 STVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSP--PCPPSNAS--- 151
+ G G G GLG + T A P P PP +
Sbjct: 658 DSDGASGDSGSGLG-----------------DARELLREETGAALKPRLPAPPPVTTPPL 700
Query: 152 CNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGS 210
T D S + Q ++ PG ++ T S+ GG+ G+ G G
Sbjct: 701 AGGSSTEDSRSEEVEEQTTVASLGAQTLPGS-DSVSTWDGSVRTPGGRVKEGGLKGQKGE 759
Query: 211 LWPRESPGTANGHSPEHTPPGPGPPG-PCPTKRRLLPAGEAPDVSSEEEG-PAPRRRRGS 268
PG A P +P PGPPG PCP L PAG A +G P P R G+
Sbjct: 760 PGVPGPPGRAG---PPGSPCLPGPPGLPCPVS-PLGPAGPALQTVPGPQGPPGPPGRDGT 815
Query: 269 LGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP 328
G P + GP+ P D GP G K P R P
Sbjct: 816 PGRDGEPGDPGEDGKPGDT----GPQGFPGTPGDVGPKGD--------KGDPGVGERGPP 863
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVT-L 387
G PP P P+ + + E S G +E G G P V L
Sbjct: 864 GPQGPP-GPPGPSFRHDKLTFIDMEGS------GFGGDLEALRGPRGFPGPPGPPGVPGL 916
Query: 388 PVTVTFFDVSEQNAPAP 404
P F V+ + P P
Sbjct: 917 PGEPGRFGVNSSDVPGP 933
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 62.0 bits (149), Expect = 1e-09
Identities = 93/352 (26%), Positives = 121/352 (34%), Gaps = 55/352 (15%)
Query: 4 VQAEPSPSSEPE----AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGT 59
V + P P P GP+ P G+ G P G PG SIFSP G
Sbjct: 722 VLSVPGPEGRPGFAGFPGPAGPKGNLGSK--GERGSPGPKGEKGEPG----SIFSPDGGA 775
Query: 60 SEPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQH 117
P + + P GP PG G P P P GL G +G G AS
Sbjct: 776 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP---GDASLG 832
Query: 118 FSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGG---------- 167
F RG+ G PP PP ++ + + P P G
Sbjct: 833 FGMRGM-----------PGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 881
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEH 227
+G+ GE P PPGQ L A++ G+ G+ G R PG G
Sbjct: 882 KGAKGEVGPPGPPGQFPFDFLQLE--AEMKGEK--GDRGDAGQKGERGEPG-GGGFFGSS 936
Query: 228 TPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPR--------RRRGSLGHPTAANSSD 279
P PGPPGP P GE+ + + P P+ R+G G P
Sbjct: 937 LPGPPGPPGPRGYPGIPGPKGES--IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPS 994
Query: 280 AKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG 327
+ +PGP P P G MG RL R+ L + + +G
Sbjct: 995 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEG 1046
Score = 43.9 bits (102), Expect = 4e-04
Identities = 81/310 (26%), Positives = 99/310 (31%), Gaps = 56/310 (18%)
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP+ K PG+G R P+ P GP GP F H L ++
Sbjct: 428 PGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPS---------FRHDKLTFIDMEG 473
Query: 131 SVTSS------WTSGAWSPPCPPSNASCNT------LHTRDWASPD-----PGGQGSLGE 173
S G PP PP +++ D P PG +G G
Sbjct: 474 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 533
Query: 174 SPGPAPPGQLHTLDT-----DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHT 228
P PPG SL + G G G R G A P
Sbjct: 534 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 593
Query: 229 PPGPGPPGP----CPTKRRLLPAGEAPDVSSEEEGPAP---------RRRRGSLGHPTAA 275
P PGPPGP P + P S+ P + G G P A
Sbjct: 594 PGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAK 653
Query: 276 NSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPS 335
A P + LPG +E + P GP G R G+R K P + PGL PP
Sbjct: 654 GEVGADGVPGFPG-LPG-REGIAGPQ--GPKGDR--GSRGEKGDPGKDGVGQPGLPGPP- 706
Query: 336 ASPVPTPAVS 345
P P VS
Sbjct: 707 GPPGPVVYVS 716
Score = 42.7 bits (99), Expect = 8e-04
Identities = 79/307 (25%), Positives = 98/307 (31%), Gaps = 60/307 (19%)
Query: 16 AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEG 75
AGP PP G GL PAG F G+ P + R A +G
Sbjct: 591 AGPPGPPGPPGPPGPGL-----PAG------------FDDMEGSGGPFWSTARSADGPQG 633
Query: 76 P---RELKRGPGL----GAR-----EGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
P LK PG+ GA+ +G+P P P G+ GP+GP G R
Sbjct: 634 PPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG-------SR 686
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + V G PP P S + P P G+ PGPA P
Sbjct: 687 GEKGDPGKDGVGQPGLPGPPGPPGPVVYVS--EQDGSVLSVPGPEGRPGFAGFPGPAGP- 743
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPGPCPT 240
+L S + G P G GS++ + PG GPPGP
Sbjct: 744 -----KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPY-- 796
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
P E P R G G + F +PGP P P
Sbjct: 797 --------GRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP---P 845
Query: 301 TDCGPMG 307
GP G
Sbjct: 846 GPPGPPG 852
Score = 37.0 bits (84), Expect = 0.046
Identities = 95/377 (25%), Positives = 124/377 (32%), Gaps = 58/377 (15%)
Query: 37 SPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEP 96
S G PG +F AG ++P K Q E +++R P + L E
Sbjct: 191 SSRGLELEPGA---GLFVAQAGGADPD---KFQGVIAE--LKVRRDPQVSPMHCLDEEGD 242
Query: 97 STVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSP--PCPPSNAS--- 151
+ G G G GLG + T A P P PP +
Sbjct: 243 DSDGASGDSGSGLG-----------------DARELLREETGAALKPRLPAPPPVTTPPL 285
Query: 152 CNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGS 210
T D S + Q ++ PG ++ T S+ GG+ G+ G G
Sbjct: 286 AGGSSTEDSRSEEVEEQTTVASLGAQTLPGS-DSVSTWDGSVRTPGGRVKEGGLKGQKGE 344
Query: 211 LWPRESPGTANGHSPEHTPPGPGPPG-PCPTKRRLLPAGEAPDVSSEEEG-PAPRRRRGS 268
PG A P +P PGPPG PCP L PAG A +G P P R G+
Sbjct: 345 PGVPGPPGRAG---PPGSPCLPGPPGLPCPVS-PLGPAGPALQTVPGPQGPPGPPGRDGT 400
Query: 269 LGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP 328
G P + GP+ P D GP G K P R P
Sbjct: 401 PGRDGEPGDPGEDGKPGDT----GPQGFPGTPGDVGPKGD--------KGDPGVGERGPP 448
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVT-L 387
G PP P P+ + + E S G +E G G P V L
Sbjct: 449 GPQGPP-GPPGPSFRHDKLTFIDMEGS------GFGGDLEALRGPRGFPGPPGPPGVPGL 501
Query: 388 PVTVTFFDVSEQNAPAP 404
P F V+ + P P
Sbjct: 502 PGEPGRFGVNSSDVPGP 518
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 62.0 bits (149), Expect = 1e-09
Identities = 93/352 (26%), Positives = 121/352 (34%), Gaps = 55/352 (15%)
Query: 4 VQAEPSPSSEPE----AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGT 59
V + P P P GP+ P G+ G P G PG SIFSP G
Sbjct: 902 VLSVPGPEGRPGFAGFPGPAGPKGNLGSK--GERGSPGPKGEKGEPG----SIFSPDGGA 955
Query: 60 SEPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQH 117
P + + P GP PG G P P P GL G +G G AS
Sbjct: 956 LGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP---GDASLG 1012
Query: 118 FSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGG---------- 167
F RG+ G PP PP ++ + + P P G
Sbjct: 1013 FGMRGM-----------PGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGP 1061
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEH 227
+G+ GE P PPGQ L A++ G+ G+ G R PG G
Sbjct: 1062 KGAKGEVGPPGPPGQFPFDFLQLE--AEMKGEK--GDRGDAGQKGERGEPG-GGGFFGSS 1116
Query: 228 TPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPR--------RRRGSLGHPTAANSSD 279
P PGPPGP P GE+ + + P P+ R+G G P
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPKGES--IRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPS 1174
Query: 280 AKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG 327
+ +PGP P P G MG RL R+ L + + +G
Sbjct: 1175 FPGPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWATRQAMLGQVHEVPEG 1226
Score = 43.9 bits (102), Expect = 4e-04
Identities = 81/310 (26%), Positives = 99/310 (31%), Gaps = 56/310 (18%)
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP+ K PG+G R P+ P GP GP F H L ++
Sbjct: 608 PGDVGPKGDKGDPGVGERGPPGPQGPP-----GPPGPS---------FRHDKLTFIDMEG 653
Query: 131 SVTSS------WTSGAWSPPCPPSNASCNT------LHTRDWASPD-----PGGQGSLGE 173
S G PP PP +++ D P PG +G G
Sbjct: 654 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 713
Query: 174 SPGPAPPGQLHTLDT-----DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHT 228
P PPG SL + G G G R G A P
Sbjct: 714 PGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGP 773
Query: 229 PPGPGPPGP----CPTKRRLLPAGEAPDVSSEEEGPAP---------RRRRGSLGHPTAA 275
P PGPPGP P + P S+ P + G G P A
Sbjct: 774 PGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAK 833
Query: 276 NSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPS 335
A P + LPG +E + P GP G R G+R K P + PGL PP
Sbjct: 834 GEVGADGVPGFPG-LPG-REGIAGPQ--GPKGDR--GSRGEKGDPGKDGVGQPGLPGPP- 886
Query: 336 ASPVPTPAVS 345
P P VS
Sbjct: 887 GPPGPVVYVS 896
Score = 42.7 bits (99), Expect = 8e-04
Identities = 79/307 (25%), Positives = 98/307 (31%), Gaps = 60/307 (19%)
Query: 16 AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEG 75
AGP PP G GL PAG F G+ P + R A +G
Sbjct: 771 AGPPGPPGPPGPPGPGL-----PAG------------FDDMEGSGGPFWSTARSADGPQG 813
Query: 76 P---RELKRGPGL----GAR-----EGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
P LK PG+ GA+ +G+P P P G+ GP+GP G R
Sbjct: 814 PPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRG-------SR 866
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + V G PP P S + P P G+ PGPA P
Sbjct: 867 GEKGDPGKDGVGQPGLPGPPGPPGPVVYVS--EQDGSVLSVPGPEGRPGFAGFPGPAGP- 923
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPGPCPT 240
+L S + G P G GS++ + PG GPPGP
Sbjct: 924 -----KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPY-- 976
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
P E P R G G + F +PGP P P
Sbjct: 977 --------GRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP---P 1025
Query: 301 TDCGPMG 307
GP G
Sbjct: 1026 GPPGPPG 1032
Score = 37.0 bits (84), Expect = 0.046
Identities = 95/377 (25%), Positives = 124/377 (32%), Gaps = 58/377 (15%)
Query: 37 SPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEP 96
S G PG +F AG ++P K Q E +++R P + L E
Sbjct: 371 SSRGLELEPGA---GLFVAQAGGADPD---KFQGVIAE--LKVRRDPQVSPMHCLDEEGD 422
Query: 97 STVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSP--PCPPSNAS--- 151
+ G G G GLG + T A P P PP +
Sbjct: 423 DSDGASGDSGSGLG-----------------DARELLREETGAALKPRLPAPPPVTTPPL 465
Query: 152 CNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGS 210
T D S + Q ++ PG ++ T S+ GG+ G+ G G
Sbjct: 466 AGGSSTEDSRSEEVEEQTTVASLGAQTLPGS-DSVSTWDGSVRTPGGRVKEGGLKGQKGE 524
Query: 211 LWPRESPGTANGHSPEHTPPGPGPPG-PCPTKRRLLPAGEAPDVSSEEEG-PAPRRRRGS 268
PG A P +P PGPPG PCP L PAG A +G P P R G+
Sbjct: 525 PGVPGPPGRAG---PPGSPCLPGPPGLPCPVS-PLGPAGPALQTVPGPQGPPGPPGRDGT 580
Query: 269 LGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP 328
G P + GP+ P D GP G K P R P
Sbjct: 581 PGRDGEPGDPGEDGKPGDT----GPQGFPGTPGDVGPKGD--------KGDPGVGERGPP 628
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVT-L 387
G PP P P+ + + E S G +E G G P V L
Sbjct: 629 GPQGPP-GPPGPSFRHDKLTFIDMEGS------GFGGDLEALRGPRGFPGPPGPPGVPGL 681
Query: 388 PVTVTFFDVSEQNAPAP 404
P F V+ + P P
Sbjct: 682 PGEPGRFGVNSSDVPGP 698
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 57.4 bits (137), Expect = 3e-08
Identities = 97/366 (26%), Positives = 122/366 (33%), Gaps = 63/366 (17%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFS--------- 119
P + G R PGL +G P P P G+ G GP G + HF
Sbjct: 1032 PGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPG 1091
Query: 120 ------------HRGLCVVE-QRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPG 166
+GL ++ R S G+ PP P + L + DPG
Sbjct: 1092 SPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGEMGDPG 1151
Query: 167 GQGSLGESPGPAPPG-----------QLHTLDTD-----LHSLAQIGGKSPVAGVGNGGS 210
+G G+ P PPG LH L L +G PV G G
Sbjct: 1152 PRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGE 1211
Query: 211 LWPRESPGTAN-GHSPEHTPPGP----GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRR 265
SPG + G + PPGP GPPGP R P ++ P P
Sbjct: 1212 RGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGP 1271
Query: 266 RGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLR 325
RG+ G P S D LPGP P P GP G + + +
Sbjct: 1272 RGAPGPPGLPGSVDLLRGEPGDCGLPGPPGP---PGPPGP-----PGYKGFPGCDGKDGQ 1323
Query: 326 KGP-GLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIG--ASGSYCP 382
KGP G P P P + L G GR P+G + G E G A CP
Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGP------PGRKGPTG-LPGPRGEPGPPADVDDCP 1376
Query: 383 QHVTLP 388
+ LP
Sbjct: 1377 RIPGLP 1382
Score = 41.2 bits (95), Expect = 0.002
Identities = 71/269 (26%), Positives = 84/269 (31%), Gaps = 43/269 (15%)
Query: 10 PSSEPEAG----PSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSP-PAGTSEPHR 64
P EAG P P + G L G G V S+ +P P G
Sbjct: 416 PGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKG--- 472
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLC 124
K P GP+ K GL A E P P GL G +G LG+
Sbjct: 473 --KVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSKGDLGL----------- 519
Query: 125 VVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLH 184
W G P PP L + AS PG +G+ G+ G
Sbjct: 520 ---------PGWL-GTKGDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKG 569
Query: 185 TLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRL 244
D G G G + PG H + TP G G PGP L
Sbjct: 570 ERGPD----GPPGFPGQPGSHGRDGHAGEKGDPGPPGDHE-DATPGGKGFPGP------L 618
Query: 245 LPAGEAPDVSSEEEG-PAPRRRRGSLGHP 272
P G+A V G P P RG G P
Sbjct: 619 GPPGKAGPVGPPGLGFPGPPGERGHPGVP 647
Score = 41.2 bits (95), Expect = 0.002
Identities = 72/300 (24%), Positives = 95/300 (31%), Gaps = 59/300 (19%)
Query: 71 PSTEGPRELKRGPGLGAREGLP-----------PEEPSTVGLLGPEGPGLGLGVASQHFS 119
P +GPR L PG G P P E GL G G G
Sbjct: 902 PGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGD 961
Query: 120 HRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRD-----WASP-----DPGGQG 169
+ ++ Q+ + G P + + R + P +PG +G
Sbjct: 962 EGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKG 1021
Query: 170 SLGESPGPAPPGQLHTLDTDLHSL----------AQIGGKSPVAGVGNGGSLWPRESPGT 219
G P PPG T L + G P G G+ P+ + G
Sbjct: 1022 QPGPPGPPGPPG-----STGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGD 1076
Query: 220 ANGHSPEHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSS 278
H P G PG PG CP S E+ P + RGS G P SS
Sbjct: 1077 PASHFGPPGPKGEPGSPG-CPGHF---------GASGEQGLPGIQGPRGSPGRPGPPGSS 1126
Query: 279 DAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASP 338
P H +PG + + D GP G L+G + GP + PS SP
Sbjct: 1127 GPPGCP-GDHGMPGLRGQPGEMGDPGPRG--LQGDPGI---------PGPPGIKGPSGSP 1174
Score = 39.7 bits (91), Expect = 0.007
Identities = 92/352 (26%), Positives = 107/352 (30%), Gaps = 81/352 (23%)
Query: 38 PAGGATSPGVY-QVSIFSPPA--GTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPE 94
P G SPGV Q I PA P + P +GPR PG EG P
Sbjct: 743 PPGPPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRG---DPGCPGAEG-PAG 798
Query: 95 EPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNT 154
P +GL GP+G H G V P PP
Sbjct: 799 IPGFLGLKGPKG----------REGHAGFPGV-----------------PGPPG------ 825
Query: 155 LHTRDWASPDPGGQGSLGESPG-PAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWP 213
H+ + +P GQ L PG P PG GK VG G
Sbjct: 826 -HSCERGAPGIPGQPGLPGYPGSPGAPG----------------GKGQPGDVGPPGPAGM 868
Query: 214 RESPGTANGHSPEHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEG----PAPRRRRGS 268
+ PG G H PPG PG PGP LP P G P R + G+
Sbjct: 869 KGLPGLP-GRPGAHGPPGLPGIPGPFGDDG--LPGPPGPKGPRGLPGFPGFPGERGKPGA 925
Query: 269 LGHPTAANSSDAKATPF--WSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRK 326
G P A K L G K + P D G M + S +
Sbjct: 926 EGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMA-------------IISQKG 972
Query: 327 GPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
PG PP P + G GR+ P G G E G G
Sbjct: 973 TPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPG 1024
Score = 39.3 bits (90), Expect = 0.009
Identities = 63/238 (26%), Positives = 82/238 (34%), Gaps = 51/238 (21%)
Query: 8 PSPSSEPEAGPSQPPVRQGA-----LQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEP 62
P P + GP P +GA L G + + G PG PP
Sbjct: 1255 PDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPG--------PPG----- 1301
Query: 63 HRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRG 122
P GP K PG ++G + VG GP+GP G + +G
Sbjct: 1302 -------PPGPPGPPGYKGFPGCDGKDG----QKGPVGFPGPQGPHGFPGPPGE----KG 1346
Query: 123 LCVVEQRSSVTSSWTSGAWSPPCPPSNAS-CNTLHTRDWASPDPGGQGSLG--ESPGPAP 179
L R T G P PP++ C + A G +G++G GP+
Sbjct: 1347 LPGPPGRKGPTG--LPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSG 1404
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
PG D G+ V GV GS P PG + P GPGPPGP
Sbjct: 1405 PGCKGEPGLD--------GRRGVDGVP--GSPGP---PGRKGDTGEDGYPGGPGPPGP 1449
Score = 38.5 bits (88), Expect = 0.016
Identities = 75/283 (26%), Positives = 91/283 (32%), Gaps = 34/283 (12%)
Query: 75 GPRELKRGPGLGAREGL--PPEEPSTVGLLGPEG-PGLGLGVASQHFSHRGLCVVE---- 127
GP +K PGL R G PP P G G +G PG RGL
Sbjct: 864 GPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPG-----PPGPKGPRGLPGFPGFPG 918
Query: 128 QRSSVTSSWTSGAWSPPCPPSNASC---NTLHTRDWASPDPGGQGSLG-----ESPG-PA 178
+R + GA P + L A PG +G + +PG P
Sbjct: 919 ERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPG 978
Query: 179 PPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPGP 237
PPG D + G K G G PG G E PG PGPPGP
Sbjct: 979 PPG-------DDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGP 1031
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
P L P + ++ P G G A K P PGPK
Sbjct: 1032 -PGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEP 1090
Query: 298 LDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVP 340
P G G + L ++ R PG PP +S P
Sbjct: 1091 GSPGCPGHFG----ASGEQGLPGIQGPRGSPGRPGPPGSSGPP 1129
Score = 35.4 bits (80), Expect = 0.13
Identities = 68/277 (24%), Positives = 85/277 (30%), Gaps = 52/277 (18%)
Query: 45 PGVYQVSIFSPPAGTSEPHRALKRQA--PSTEGPRELKRGPGLGAREGLPPE-----EPS 97
PG+ V + PP E K + P GPR G GL E +P
Sbjct: 278 PGM--VGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPG 335
Query: 98 TVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHT 157
GL+GP+G G H G+ V +PP P
Sbjct: 336 LFGLIGPKGDPGNRG----HPGPPGVLV----------------TPPLPLKGPP------ 369
Query: 158 RDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLA-QIGGKSPVAGVGNGGSLWPRES 216
DPG G GE+ PPG L + A IG P G G
Sbjct: 370 -----GDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGI 424
Query: 217 PGTANGHSPEHTPPGPGPPG----PCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP 272
PG P+ P PG PG P + LP + P P+ +G +G P
Sbjct: 425 PG-----RPDSAPGKPGKPGSPGLPGAPGLQGLPGSSV--IYCSVGNPGPQGIKGKVGPP 477
Query: 273 TAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRR 309
K PGP P P G G +
Sbjct: 478 GGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQGSK 514
Score = 32.3 bits (72), Expect = 1.1
Identities = 77/306 (25%), Positives = 104/306 (33%), Gaps = 60/306 (19%)
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P G LK PG+G + + +P VG G GP L + C+ +
Sbjct: 222 PGQPGRPGLKGNPGVGVKGQMG--DPGEVGQQGSPGPTLLVEPPD-------FCLYKGEK 272
Query: 131 SVTSSWTSGAWSPPCPPSNASCNTLHTR-DWASPD-PGGQGSLGESPGPAPPGQLHTLDT 188
+ G P PP + + + + P PG +G G P PG L
Sbjct: 273 GIKG--IPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGL 330
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEH---TPPGP--GPPGPCPTKRR 243
V G G + P+ PG P TPP P GPPG R
Sbjct: 331 -------------VGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGR 377
Query: 244 LLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE-PVLD--P 300
GE DV P P G LG P A + PGP+ P L P
Sbjct: 378 Y---GETGDVGP----PGPP---GLLGRPGEACAGMIGP--------PGPQGFPGLPGLP 419
Query: 301 TDCGPMGRRLKGARRLKLSPLRSLRKG-PGLLSPPSASPVPTPAVSRTLLGNFEESLLRG 359
+ G GR +P + + G PGL P +P +V +GN ++G
Sbjct: 420 GEAGIPGRP-------DSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKG 472
Query: 360 RFAPSG 365
+ P G
Sbjct: 473 KVGPPG 478
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 144 PCPPSNAS-CNTLHTRDWASPD--PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKS 200
PC + S C+ + + P PG QG +G P P G G +
Sbjct: 46 PCGGRDCSVCHCVPEKGSRGPPGPPGPQGPIGPLGAPGPIGLSG-------EKGMRGDRG 98
Query: 201 PVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
P G+ G P PG + P PGPPGP
Sbjct: 99 PPGAAGDKGDKGPTGVPGFPG---LDGIPGHPGPPGP 132
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 57.0 bits (136), Expect = 4e-08
Identities = 108/448 (24%), Positives = 143/448 (31%), Gaps = 57/448 (12%)
Query: 5 QAEPSPSSEPEAGPSQPPVRQ---GALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
Q S + P P VR GAL ++ G SPAG A AG +
Sbjct: 32 QLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSG-SPAGAAG-------------AGPAA 77
Query: 62 PHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
P AP + G G R G PP + GP P L +
Sbjct: 78 PAEGAPGAAPEPPPAGRARPGGGGPQRPG-PPSPRRPLVPAGPAPPAAKLRPPPE--GSA 134
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPG-PAPP 180
G C ++ ++ A + P P+ + L R P PG G PG PA P
Sbjct: 135 GSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA--LAARAGPGPGPGPGPGPGPGPGKPAGP 192
Query: 181 GQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPG---PPGP 237
G TL+ L +P + N G P A + TPP G PP P
Sbjct: 193 GAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAP 252
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP--------------TAANSSDAKAT 283
PA AP + PAP GHP A N A A
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAA 312
Query: 284 PFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKL-SPLRSLRKGPGLLSPPSASPVPTP 342
P + GP P GP A +K SP R ++ P +AS P
Sbjct: 313 PAPAPAAGGPAGVSGQP---GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG-PAS 368
Query: 343 AVSRTLLGNFEESLLRGRFA--------PSGHIEGFTAEIGASGSYCPQHVTLPVTVTFF 394
+ ++G + L A P+G +G + S S P T + T
Sbjct: 369 TAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATL- 427
Query: 395 DVSEQNAPAPFLGIVDLNPLGRKGYSVP 422
AP L NP + + +P
Sbjct: 428 ---TPTVLAPRLPQPPQNPTNIQNFQLP 452
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 55.5 bits (132), Expect = 1e-07
Identities = 94/365 (25%), Positives = 119/365 (32%), Gaps = 71/365 (19%)
Query: 2 RHVQAEPSPSSEP-EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
R + P + P GPS P + G PAG +PG VS P
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPP--------GPAGNTGAPGSPGVS--GPKGDAG 927
Query: 61 EPHRALKRQAPSTEGPRELKRGP----GLGAREGL--PPEEPSTVGLLGPEG-------P 107
+P ++ +P +GP GP G+ GL PP P G GP+G P
Sbjct: 928 QPG---EKGSPGAQGPPGAP-GPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKP 983
Query: 108 GL-GLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPG 166
G GL +GL +G P N + L RD + PG
Sbjct: 984 GANGLSGERGPPGPQGL-----------PGLAGTAGEPGRDGNPGSDGLPGRDGS---PG 1029
Query: 167 GQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPE 226
G+G GE+ P PG + G PV G G G A P
Sbjct: 1030 GKGDRGENGSPGAPG----------APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA 1079
Query: 227 HTPPGPGPPGPCPTKRRLLPAGEA--------PDVSSEEEGPAPRRRRGSLGHPTAANSS 278
+ PGP GP K G A P P P ++G++G P A
Sbjct: 1080 GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139
Query: 279 DAKATPFWSHLLPGPKEPVLDPTDCGPMG-RRLKGARRLKLSPLRSLRKGPGLLSPPSAS 337
P PG P GP G R +G R + SP PG PP
Sbjct: 1140 G----PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP-----GHPGQPGPPGPP 1190
Query: 338 PVPTP 342
P P
Sbjct: 1191 GAPGP 1195
Score = 45.1 bits (105), Expect = 2e-04
Identities = 80/319 (25%), Positives = 101/319 (31%), Gaps = 50/319 (15%)
Query: 5 QAEPSPSSEPEA-GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS--- 60
+ EP P A GP PP G+ G MG PAG +PG+ PAG +
Sbjct: 368 RGEPGPQGHAGAQGPPGPPGINGSPGGKGEMG--PAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 61 -------EPHRALKRQAPSTEGPRELKRGPGLGAREGLP-----PEEPSTVGLLGPEG-- 106
EP + + P G R PG+ +G P EP GL G G
Sbjct: 426 GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGER 485
Query: 107 --PGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSP-----PCPPSNASCNTLHTRD 159
PG E+ + + A P P P
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 160 WASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPG- 218
+ PG GS GES P PPG +G P G G R PG
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGP----SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG 601
Query: 219 -------TANGHSPEHTPPGP----------GPPGPCPTKRRLLPAGEAPDVSSEEEGPA 261
NG + PPGP GPPGP + L G P + + P
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP-QGLQGLPGTGGPPGENGKPGEPG 660
Query: 262 PRRRRGSLGHPTAANSSDA 280
P+ G+ G P + A
Sbjct: 661 PKGDAGAPGAPGGKGDAGA 679
Score = 45.1 bits (105), Expect = 2e-04
Identities = 78/310 (25%), Positives = 91/310 (29%), Gaps = 74/310 (23%)
Query: 9 SPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKR 68
SP G PP QG + G P+G PGV F P G
Sbjct: 541 SPGGPGSDGKPGPPGSQG--ESGRPGPPGPSGPRGQPGVMG---FPGPKGNDG------- 588
Query: 69 QAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
AP G R GPG P P G GP+GP G
Sbjct: 589 -APGKNGERGGPGGPG-------PQGPPGKNGETGPQGPPGPTGPGGD------------ 628
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDT 188
G PP P PG G GE+ P PG
Sbjct: 629 ---------KGDTGPPGPQGLQGL------------PGTGGPPGENGKPGEPGP----KG 663
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG------PGPPGPCPTKR 242
D + GGK G G +PG G P G PGPPG T
Sbjct: 664 DAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Query: 243 RLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTD 302
GE + S P P+ +G G P A+ K P GP P+ P
Sbjct: 724 LQGMPGERGGLGS----PGPKGDKGEPGGP-GADGVPGKDGP------RGPTGPIGPPGP 772
Query: 303 CGPMGRRLKG 312
G G + +G
Sbjct: 773 AGQPGDKGEG 782
Score = 42.4 bits (98), Expect = 0.001
Identities = 110/453 (24%), Positives = 126/453 (27%), Gaps = 110/453 (24%)
Query: 10 PSSEPEAGPSQPPVRQGALQGGLLMGY-SPAGGATSPGVYQVSIFSPPAGTSEPHRALKR 68
P E G + PP GA L G GG SPG P EP
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG--------PKGDKGEPGGPGAD 752
Query: 69 QAPSTEGPRELKRGP-------------GLGAREGLPP-----EEPSTVGLLGPEGPGLG 110
P +GPR GP G G GLP P G GP GP
Sbjct: 753 GVPGKDGPRG-PTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGF 811
Query: 111 LGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGS 170
G Q+ G +R + G PP + A P PG QG
Sbjct: 812 PGAPGQNGEPGGK---GERGAPGEKGEGGPPGVAGPPGGSGP--------AGP-PGPQGV 859
Query: 171 LGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPP 230
GE P PG G P GN G P SPG P
Sbjct: 860 KGERGSPGGPGAAGFPGAR-------GLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 231 GPGPPGPCPTKRRLLPAGE-----------------------------APDVSSEEEGPA 261
PG PG K GE P + P
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPG 972
Query: 262 PRRRRGSLGHPTAANSSDAKATPFWSHLLPG-------------PKEPVLDPTDCGPMGR 308
P+ +G G P AN + P LPG P L D P G+
Sbjct: 973 PQGVKGESGKP-GANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGK 1031
Query: 309 RLKGARRLKLSPLRSLRKGP-------------GLLSPPSASPVPTPAVSRTL------L 349
+G +P GP G P + P PA SR
Sbjct: 1032 GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPR 1091
Query: 350 GNFEESLLRGRFAPSGHIEGFTAEIGASGSYCP 382
G+ E+ RG GH GF GA GS P
Sbjct: 1092 GDKGETGERGAAGIKGH-RGFPGNPGAPGSPGP 1123
Score = 41.2 bits (95), Expect = 0.002
Identities = 78/292 (26%), Positives = 93/292 (31%), Gaps = 67/292 (22%)
Query: 8 PSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALK 67
P P+ P GP PP G G SPG YQ PP + +
Sbjct: 173 PGPAGPP--GPPGPPGTSGH-----------PGSPGSPG-YQ----GPPGEPGQAGPSGP 214
Query: 68 RQAPSTEGPRELKRGPGLGAREGLPPEE--PSTVGLLGPEG----PGLGLGVASQHFSHR 121
P GP G R G P E P G+ GP G PG+ HR
Sbjct: 215 PGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMK--------GHR 266
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G +G P N L + A G +G+ GE P PG
Sbjct: 267 GF-----------DGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPG 315
Query: 182 QLHTLDTD--LHSLAQIGGKSPVAGVGNGGS------LWPRESPGTANGHSPEHTPPGP- 232
D S Q G P G GS + P SPG+ NG + PGP
Sbjct: 316 AAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGS-NGAPGQRGEPGPQ 374
Query: 233 ------GPPGPCPT------KRRLLPAG--EAPDVSSEEEGPAPRRRRGSLG 270
GPPGP K + PAG AP + P P G+ G
Sbjct: 375 GHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPG 426
Score = 40.8 bits (94), Expect = 0.003
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 162 SPDPGGQGSLGESPGPA----------PPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSL 211
SP P GQ SPGPA PPG+ T G P+ G G+
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS----------GHPGPIGPPGPRGNR 1169
Query: 212 WPRESPGTANGHSPEHTPPGP-GPPGPC 238
R S G+ GH + PPGP G PGPC
Sbjct: 1170 GERGSEGSP-GHPGQPGPPGPPGAPGPC 1196
Score = 35.0 bits (79), Expect = 0.17
Identities = 61/237 (25%), Positives = 73/237 (30%), Gaps = 51/237 (21%)
Query: 165 PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHS 224
P GQG G P PPG I G++ G+ PG
Sbjct: 99 PNGQGPQGPKGDPGPPG--------------IPGRNGDPGIPG--------QPG------ 130
Query: 225 PEHTPPGPGPPG---PCPT-KRRLLPAGEAPDVSS------------EEEGPAPRRRRGS 268
+P PGPPG CPT + P ++ DV S P P G+
Sbjct: 131 ---SPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGT 187
Query: 269 LGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGAR--RLKLSPLRSLRK 326
GHP + S + P GP P P GP G K R R L
Sbjct: 188 SGHPGSPGSPGYQGPP-GEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPG 246
Query: 327 GPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQ 383
PG+ P P R G E G G G E GA G P+
Sbjct: 247 PPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGE-NGLPGENGAPGPMGPR 302
Score = 35.0 bits (79), Expect = 0.17
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 27/136 (19%)
Query: 164 DPGGQGSLGESPGPAPPGQLHTLDT------------DLHSLAQIGGKS-------PVAG 204
DPG G G P PPG + T D+ S +GG + P
Sbjct: 122 DPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP 181
Query: 205 VGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEA--------PDVSSE 256
G G+ SPG+ P P GP GP + P+G A P E
Sbjct: 182 PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGE 241
Query: 257 EEGPAPRRRRGSLGHP 272
P P +G G P
Sbjct: 242 RGLPGPPGIKGPAGIP 257
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 53.9 bits (128), Expect = 4e-07
Identities = 101/394 (25%), Positives = 128/394 (32%), Gaps = 75/394 (19%)
Query: 10 PSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQ 69
P + GP+ P +G P G PG S PAG Q
Sbjct: 906 PGPRGQRGPTGPRGERG-----------PRGITGKPGPKGNSGGDGPAGPPGERGPNGPQ 954
Query: 70 APST-EGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVV 126
P+ GP K PG ++GLP P + G G GP GV +
Sbjct: 955 GPTGFPGP---KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPM 1011
Query: 127 EQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTL 186
+R G PP PP L ++ DPG G G+ PPG L
Sbjct: 1012 GER---------GHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKD---GPPG-LRGF 1058
Query: 187 DTDLHSLAQIGGKSPVAGVGNGGSLWPRESP---GTANGHSPEHTPPGPGPPGPCPTKRR 243
D +G G G P SP G A P P PGP GP
Sbjct: 1059 PGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPG---- 1114
Query: 244 LLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDC 303
PAGE + E+GP R L P LPGP PV P +
Sbjct: 1115 --PAGEKG--APGEKGPQGPAGRDGLQGPVG---------------LPGPAGPVGPPGED 1155
Query: 304 GPMG-------RRLKGARRLKLSPLRSLRKGP-GLLSPPSASPVPTPAVSRTLLGNFEES 355
G G + KG + + P + +GP G P A P P + L G +
Sbjct: 1156 GDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDE 1215
Query: 356 LLRGRFAPSGHI-----------EGFTAEIGASG 378
RG P G + +G T ++G G
Sbjct: 1216 GPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMG 1249
Score = 47.4 bits (111), Expect = 3e-05
Identities = 82/313 (26%), Positives = 99/313 (31%), Gaps = 46/313 (14%)
Query: 7 EPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPG-VYQVSIFSPPAGTSEPHRA 65
+P PS G P +QG G P G PG V + PP E
Sbjct: 1190 QPGPSGAD--GEPGPRGQQGLF--GQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDV 1245
Query: 66 LKRQAPSTEGPRELKRGPGLGAREGLPPE--EPSTVGLLGPEG----PGL-GLGVASQHF 118
+ P GPR PG +G P P VG G G PGL G G
Sbjct: 1246 GQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPK 1305
Query: 119 SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA 178
RG ++ S +G P PP + D PG G G+ P
Sbjct: 1306 GERG-----EKGESGPSGAAGPPGPKGPPGD---------DGPKGSPGPVGFPGD---PG 1348
Query: 179 PPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPC 238
PPG+ G P G+ G SPG P P GPPGP
Sbjct: 1349 PPGEP----------GPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPA 1398
Query: 239 PTKRRLLPAGEAPDVSSEEEGP----APRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK 294
+ R G + EGP P +G+ G P + P LPG
Sbjct: 1399 GPEGRQGEKGAKGEAGL--EGPPGKTGPIGPQGAPGKP-GPDGLRGIPGPVGEQGLPGSP 1455
Query: 295 EPVLDPTDCGPMG 307
P P GP G
Sbjct: 1456 GPDGPPGPMGPPG 1468
Score = 41.2 bits (95), Expect = 0.002
Identities = 79/301 (26%), Positives = 96/301 (31%), Gaps = 77/301 (25%)
Query: 8 PSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALK 67
P P+ EP GPS PP ++G P G G + P G + P
Sbjct: 1377 PGPTGEP--GPSGPPGKRGPPGPA-----GPEGRQGEKGAKGEAGLEGPPGKTGPIGP-- 1427
Query: 68 RQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEG-PGL-GLGVASQHFSHRGL 123
+ AP GP L+ PG +GLP P G +GP G PGL G H GL
Sbjct: 1428 QGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGL 1487
Query: 124 CVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQL 183
G PP G QG G+ P P G
Sbjct: 1488 I--------------GLIGPP---------------------GEQGEKGDRGLPGPQGSS 1512
Query: 184 HTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPGPCPTKR 242
G K G G + P PG PPG PGPPGP K
Sbjct: 1513 -------------GPKGEQGITGPSGPIGP---PG----------PPGLPGPPGPKGAKG 1546
Query: 243 RLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLL-PGPKEPVLDPT 301
P G + + P P G + P +S + S LL G E +D
Sbjct: 1547 SSGPTGPKGE-AGHPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGNGENYVDYA 1605
Query: 302 D 302
D
Sbjct: 1606 D 1606
Score = 39.3 bits (90), Expect = 0.009
Identities = 36/145 (24%), Positives = 50/145 (34%), Gaps = 36/145 (24%)
Query: 164 DPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGH 223
+ G +G G S P PPG G+ G+ G + PR PG
Sbjct: 641 EKGHRGDPGPSGPPGPPGD--------------DGER-----GDDGEVGPRGLPGEPGPR 681
Query: 224 SPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKAT 283
PGPPGP P V+ + P P+ G G P
Sbjct: 682 GLLGPKGPPGPPGP-------------PGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPG- 727
Query: 284 PFWSHLLPGPKEPVLDPTDCGPMGR 308
+ LPGP+ + P + GP+G+
Sbjct: 728 ---AQGLPGPQGAIGPPGEKGPLGK 749
Score = 39.3 bits (90), Expect = 0.009
Identities = 79/317 (24%), Positives = 97/317 (30%), Gaps = 74/317 (23%)
Query: 17 GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGP 76
GP PP + G G + G T P + P T E +R P GP
Sbjct: 964 GPPGPPGKDGLPGHPGQRGETGFQGKTGPPG-PPGVVGPQGPTGETGPMGERGHPGPPGP 1022
Query: 77 RELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSW 136
+ PGL +EG + P GL G +GP G RGL V +
Sbjct: 1023 PGEQGLPGLAGKEGTKGD-PGPAGLPGKDGPPGLRGFPGD----RGL-----PGPVGALG 1072
Query: 137 TSGAWSPPCPPSNASCNTLHTRDWAS--------------PDPGGQ-GSLGES------- 174
G PP PP A A+ P P G+ G+ GE
Sbjct: 1073 LKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132
Query: 175 ----------PGPA----PPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTA 220
PGPA PPG+ D D + + G K G G P G
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGE----DGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPI 1188
Query: 221 NGHSPEHTP--PG-------------------PGPPGPCPTKRRLLPAGEAPDVS--SEE 257
P PG PGPPGP + P GE + +
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248
Query: 258 EGPAPRRRRGSLGHPTA 274
P P RG G P A
Sbjct: 1249 GPPGPPGPRGPSGAPGA 1265
Score = 38.9 bits (89), Expect = 0.012
Identities = 43/178 (24%), Positives = 53/178 (29%), Gaps = 53/178 (29%)
Query: 93 PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASC 152
P EP GLLGP+GP PP PP
Sbjct: 675 PGEPGPRGLLGPKGPP---------------------------------GPPGPPGVTGM 701
Query: 153 NTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLW 212
+ PG +G++G P PPGQ G P +G G
Sbjct: 702 DG---------QPGPKGNVGPQGEPGPPGQQGNPGAQ-------GLPGPQGAIGPPGEKG 745
Query: 213 PRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLG 270
P PG + P PG GP K P G + P PR +G+ G
Sbjct: 746 PLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGY----PGPRGVKGADG 799
Score = 37.7 bits (86), Expect = 0.027
Identities = 56/221 (25%), Positives = 74/221 (33%), Gaps = 50/221 (22%)
Query: 161 ASPDPGGQGSLGESPGPAPPGQLH-TLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT 219
A+ + GG+G+ G+ P P GQ T I GK GN G P PG
Sbjct: 893 ANGEKGGRGTPGK---PGPRGQRGPTGPRGERGPRGITGKP--GPKGNSGGDGPAGPPGE 947
Query: 220 ANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSS- 278
+ P+ PGP GP P P + G GHP +
Sbjct: 948 RGPNGPQGPTGFPGPKGP----------------------PGPPGKDGLPGHPGQRGETG 985
Query: 279 -DAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSAS 337
K P + GP+ P + GPMG R PG PP
Sbjct: 986 FQGKTGPPGPPGVVGPQGPT---GETGPMGE----------------RGHPGPPGPPGEQ 1026
Query: 338 PVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
+P A G+ + L G+ P G + GF + G G
Sbjct: 1027 GLPGLAGKEGTKGDPGPAGLPGKDGPPG-LRGFPGDRGLPG 1066
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 53.1 bits (126), Expect = 6e-07
Identities = 102/365 (27%), Positives = 122/365 (33%), Gaps = 82/365 (22%)
Query: 38 PAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPE--- 94
P G AT+ G P P + P T G LK PGL G P E
Sbjct: 1288 PPGSATAKGERGF-----PGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGP 1342
Query: 95 -----EPSTVG-LLGPEGPGL----GLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPP 144
EP G ++G EGPGL G S RG G PP
Sbjct: 1343 RGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRG-----------PLGDPGPRGPP 1391
Query: 145 CPPSNASCNTLHTRDWASPDPGGQGSL--GE--------SPGP----APPGQLHTLDTDL 190
P A R P G+G + GE SPGP PPG+
Sbjct: 1392 GLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSE 1451
Query: 191 HSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP----------GPPGPCPT 240
+ G+ G+ G PR PG A G + PGP GPPGP +
Sbjct: 1452 DGAPGLPGQP-----GSPGEQGPRGPPG-AIGPKGDRGFPGPLGEAGEKGERGPPGPAGS 1505
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDP 300
R L P E P P R+G G P A P + GPK +
Sbjct: 1506 -RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEP-GRPGDPAVVGP----AVAGPKG---EK 1556
Query: 301 TDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGR 360
D GP G R GA + ++ R PGL+ P P P R +G L GR
Sbjct: 1557 GDVGPAGPR--GA-----TGVQGERGPPGLVLPGDPGPKGDPG-DRGPIG------LTGR 1602
Query: 361 FAPSG 365
P G
Sbjct: 1603 AGPPG 1607
Score = 50.1 bits (118), Expect = 5e-06
Identities = 78/299 (26%), Positives = 96/299 (32%), Gaps = 44/299 (14%)
Query: 95 EPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNT 154
EP +GL G GP G+ + +GA P PP +A+
Sbjct: 1258 EPGEMGLRGQVGPPGDPGLPGR---------------------TGAPGPQGPPGSATAKG 1296
Query: 155 LHTRDWASPDPGGQGSLGESPGPAPPGQLHT--LDTDLHSLAQIGGKSPVAGVGNGGSLW 212
A PG G G P PG + L + G + P G G +
Sbjct: 1297 ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVI 1356
Query: 213 PRESPGTANGHSPEHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGH 271
E PG G + P G PGP GP P G ++G RG G
Sbjct: 1357 GGEGPGLP-GRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGD-----RGERGP 1410
Query: 272 PTAANSSDAKATPFWSHL--LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKG-- 327
P A P L PGP+ PV P G G GA L P +G
Sbjct: 1411 PGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPR 1470
Query: 328 --PGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGASGSYCP 382
PG + P P P LG E RG P+G + G GA G P
Sbjct: 1471 GPPGAIGPKGDRGFPGP------LGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Score = 45.8 bits (107), Expect = 1e-04
Identities = 98/377 (25%), Positives = 118/377 (31%), Gaps = 66/377 (17%)
Query: 7 EPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS------ 60
EP P E GP P ++ + G P G PG+ P G
Sbjct: 2098 EPGPGLSGEQGP--PGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLP 2155
Query: 61 -EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGP-GLGLGVASQHF 118
E A P +GPR GP G + PP P G GP+GP GL
Sbjct: 2156 GERGMAGPEGKPGLQGPRG-PPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGP 2214
Query: 119 SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA 178
RGL + +GA P PP + PG G +GE+ P
Sbjct: 2215 PGRGL-----------TGPTGAVGLPGPPGPSGL------VGPQGSPGLPGQVGETGKPG 2257
Query: 179 PPGQ--LHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTA----NGHSPEHTPPG- 231
PG+ D D S G VG G P +PG A G E PG
Sbjct: 2258 APGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGG 2317
Query: 232 --------------PGPPGPCPTKRRLLPAGEA--PDVSSEEEGPAPRRRRGSLGHPTAA 275
G PGP K AGE P ++ P P+ +G G
Sbjct: 2318 LAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPG 2377
Query: 276 NSSDAKATPFWSHL----LPGPKEPVLDPTDCGPMGRR----LKGARRLKLSPLRSLRKG 327
+ L LPG V P GP G G R L P R G
Sbjct: 2378 SPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPG 2437
Query: 328 -------PGLLSPPSAS 337
PG + PP AS
Sbjct: 2438 PLGPPGPPGSVGPPGAS 2454
Score = 45.4 bits (106), Expect = 1e-04
Identities = 101/375 (26%), Positives = 124/375 (33%), Gaps = 65/375 (17%)
Query: 15 EAGPSQPPVRQGALQGGLLMGY----SPAGGATSPGVYQV-SIFSPPAGTSEPHRALKRQ 69
+ GP PP GL +G P+G A PG + + G E R
Sbjct: 2010 DPGPQGPP--------GLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGR----- 2056
Query: 70 APSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQR 129
P G R K G R+G PP P T G GP GP + + GL
Sbjct: 2057 -PGERGERGEKGERGEQGRDG-PPGLPGTPGPPGPPGPKVSVDEPGP-----GL------ 2103
Query: 130 SSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTD 189
SG PP + D G G G+ P P GQ
Sbjct: 2104 --------SGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQ------- 2148
Query: 190 LHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAG 248
+ G+ +AG G G PR PG GH P PG GP + P+G
Sbjct: 2149 -DGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQG---PSG 2204
Query: 249 EAPDVSSEEEGPAPR---RRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGP 305
+ E GP R G++G P S P S LPG P G
Sbjct: 2205 LKGEPG--ETGPPGRGLTGPTGAVGLPGPPGPS-GLVGPQGSPGLPGQVGETGKPGAPGR 2261
Query: 306 MGRRLKGARRLKLSPLRSLRKGPGLLSP--PSASPVPTPAVSRTLLGNFEESLLRGRFAP 363
G K R SP + PGL P P P PT A + ++G +G AP
Sbjct: 2262 DGASGKDGDR--GSP--GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKG--AP 2315
Query: 364 SGHIEGFTAEIGASG 378
G E GA G
Sbjct: 2316 GGLAGDLVGEPGAKG 2330
Score = 43.5 bits (101), Expect = 5e-04
Identities = 86/369 (23%), Positives = 107/369 (28%), Gaps = 77/369 (20%)
Query: 5 QAEPSPSSEP-------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSP-- 55
+ +P PS P + GP PP G G G G PG ++ P
Sbjct: 1367 KGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGD-KGDRGERGPPGPGEGGIAPGEPGL 1425
Query: 56 --------PAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGP 107
P G P + S +G L PG +G P P +G G G
Sbjct: 1426 PGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG-PRGPPGAIGPKGDRGF 1484
Query: 108 GLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDP-- 165
LG A + R + GA P PP DP
Sbjct: 1485 PGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAV 1544
Query: 166 ------------------GGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGN 207
G +G+ G PPG + L D G + P+ G
Sbjct: 1545 VGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLV--LPGDPGPKGDPGDRGPIGLTGR 1602
Query: 208 GGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGP------- 260
G PG + + P PGPPGP + R GE D EGP
Sbjct: 1603 AGP------PGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGD-----EGPPGDPGLP 1651
Query: 261 ---------------APRRRRGSLGHP--TAANSSDAKATPFWSHLLPGPKEPVLDPTDC 303
P +G G P N S + P PGP P D
Sbjct: 1652 GKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDT 1711
Query: 304 GPMGRRLKG 312
GP G R KG
Sbjct: 1712 GP-GAREKG 1719
Score = 38.5 bits (88), Expect = 0.016
Identities = 60/223 (26%), Positives = 72/223 (32%), Gaps = 23/223 (10%)
Query: 74 EGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQ--HFSHRGLCVVEQRSS 131
EGPR K PGL G E G GP GP GV RG ++ RS
Sbjct: 1727 EGPRGPKGDPGLPGAPG----ERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSG 1782
Query: 132 VTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ--------- 182
+ GA P P A RD G QG G S P PG+
Sbjct: 1783 LDGK--PGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGL 1840
Query: 183 --LHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPT 240
+ D + G K G G P+ G P+ P PGP GP
Sbjct: 1841 NGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQ 1900
Query: 241 KRRLLPAGEAPDVSSEEEGPAPRR----RRGSLGHPTAANSSD 279
+P G P E G + RG G P + + D
Sbjct: 1901 GFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVD 1943
Score = 38.1 bits (87), Expect = 0.020
Identities = 73/268 (27%), Positives = 84/268 (31%), Gaps = 43/268 (16%)
Query: 71 PSTEGPRELK--RGP-GLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVE 127
P GP K RGP GL R GL + G GP GP G A GL +
Sbjct: 1760 PGVRGPAGEKGDRGPPGLDGRSGLDGKP----GAAGPSGPNGAAGKAGDP-GRDGLPGLR 1814
Query: 128 QRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLD 187
+ SG P P L+ ++ DPG G GE G+ D
Sbjct: 1815 GEQGLPGP--SGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGR-EGRD 1871
Query: 188 TDLHSLAQIGGKSPVAGVGNGGSLWP--RESPGTANGHSP-----------EHTPPGP-- 232
G P G G + P + PG G P E PG
Sbjct: 1872 GPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERG 1931
Query: 233 --GPPGPCPTKRRLLPAG-----------EAPDVSSEEEGPAPRRRRGSLGHPTAANSSD 279
G PG P RLL E D SS P P RRRG G +
Sbjct: 1932 LRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKG-DSGEQGPP 1990
Query: 280 AKATPFWSHLLPGPKEPVLDPTDCGPMG 307
K P PG + D D GP G
Sbjct: 1991 GKEGPIG---FPGERGLKGDRGDPGPQG 2015
Score = 35.8 bits (81), Expect = 0.10
Identities = 54/206 (26%), Positives = 69/206 (33%), Gaps = 36/206 (17%)
Query: 83 PGLGAREGLPP--EEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGA 140
PG ++G+P E VG +GP G GV +G C ++ G
Sbjct: 2598 PGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGV-------KGACGLDGEKG-----DKGE 2645
Query: 141 WSPPCPPSNASCNTLHTRDWASPD-PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGK 199
PP P A H + P PG G+ G+ P G D Q G K
Sbjct: 2646 AGPPGRPGLAG----HKGEMGEPGVPGQSGAPGKEGLIGPKG-------DRGFDGQPGPK 2694
Query: 200 SPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAG-EAPDVSSEEE 258
G+ G R +PG P GPPGP + P G E E
Sbjct: 2695 ------GDQGEKGERGTPGIGGFPGPSGNDGSAGPPGP---PGSVGPRGPEGLQGQKGER 2745
Query: 259 GPAPRRRRGSLGHPTAANSSDAKATP 284
GP R G+ G P A + P
Sbjct: 2746 GPPGERVVGAPGVPGAPGERGEQGRP 2771
Score = 34.3 bits (77), Expect = 0.30
Identities = 62/242 (25%), Positives = 77/242 (31%), Gaps = 58/242 (23%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R +P PS E G + PP R+G G L P G PG + G
Sbjct: 2412 RGEMGQPGPSGE--RGLAGPPGREGI--PGPLGPPGPPGSVGPPGASGLKGDKGDPGVGL 2467
Query: 62 PHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
P GPR + PG+ +G P +E GL GP G R
Sbjct: 2468 P------------GPRGERGEPGIRGEDGRPGQEGPR-GLTGPPGSR----------GER 2504
Query: 122 GLCVVEQRSSVTSSWTSG-------AWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
G ++ V S+ G PP P A D G +G G
Sbjct: 2505 G-----EKGDVGSAGLKGDKGDSAVILGPPGPRG------------AKGDMGERGPRGLD 2547
Query: 175 PGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGP 234
P G + D S + G K G G L P+ PG A P PG
Sbjct: 2548 GDKGPRGD-NGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAG------IPGDPGS 2600
Query: 235 PG 236
PG
Sbjct: 2601 PG 2602
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 52.4 bits (124), Expect = 1e-06
Identities = 91/355 (25%), Positives = 124/355 (34%), Gaps = 47/355 (13%)
Query: 8 PSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALK 67
P P + + +PP G+ G + PG+ P G+ P R+ +
Sbjct: 523 PKPERKQQPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGL-------SPGGSRRPPRSPE 575
Query: 68 RQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVE 127
R L G ++ G P P G GP G A R +
Sbjct: 576 RT---------LSPSSGYSSQSGTPTLPPK-----GLAGPPASPGKAQPPKPERVTSLRS 621
Query: 128 QRSSVTSSWTS--GAWSPPCPPSNAS---CNTLHTRDWASPDPGGQGSLGESPGPAPPGQ 182
+SV+SS TS + S P P + L R P P SP P+ P
Sbjct: 622 PGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPAPF--SPPPSKPRS 679
Query: 183 LHTLDTDLHSLAQIGGK------SPVAGVGNGGSLWP-RESPGTANGHSPEHTPPGPGPP 235
+ L + A + G SP + +L P +ESP + SP +PP P
Sbjct: 680 PNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHP 739
Query: 236 GPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE 295
P PTK+ + EAP S E P + P A D F P P+E
Sbjct: 740 PPPPTKKPEVVV-EAPSASETAEEPL-QDPNWPPPPPPAPEEQDLSMADF-----PPPEE 792
Query: 296 ---PVLDPTDCGPMGR-RLKGARRLKLSPLRSLR-KGPGLLSPPSASPVPTPAVS 345
V P GP G L + S +L+ + PG PP A P P PA S
Sbjct: 793 AFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASS 847
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 52.4 bits (124), Expect = 1e-06
Identities = 87/352 (24%), Positives = 115/352 (32%), Gaps = 46/352 (13%)
Query: 8 PSPSS-----EPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEP 62
PSP P+ P+ P V + +G P G +T P S PA T P
Sbjct: 994 PSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLP 1053
Query: 63 HRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTV-----GLLGPEGPGLGLGVASQH 117
A A + P K GP + +G P +T G P G + A+
Sbjct: 1054 KGAPTTPAATLPSP---KGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATP 1110
Query: 118 FSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGP 177
S +G T+ A +PP P A+P P G + + P
Sbjct: 1111 PSPKGGLATPPHKGAP---TTPAATPPSPKGGL----------ATPPPKGAPTTPAATPP 1157
Query: 178 APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP--GPP 235
+P G L T +P + G + P+ +P T P TPP P G
Sbjct: 1158 SPKGGLAT--PPPKGAPTTPAATPPSPKGGLATPSPKGAPTT-----PAATPPSPKGGLA 1210
Query: 236 GPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPT--AANSSDAKATPFWSHLLPGP 293
P P PA P P+P+ G PT AA K P P
Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPK------GAPTTPAATPPSPKGGPATPPPKGAP 1264
Query: 294 KEPVLDPTDC--GPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPA 343
P P G KGA + S + GP SPP +P P A
Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPA-TSPPKGAPTPPAA 1315
Score = 50.4 bits (119), Expect = 4e-06
Identities = 92/358 (25%), Positives = 114/358 (31%), Gaps = 35/358 (9%)
Query: 6 AEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRA 65
A PSP P + PP +G L G AT P PP G A
Sbjct: 1095 ATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1154
Query: 66 LKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCV 125
PS +G G P P GL P G A+ S +G
Sbjct: 1155 ---TPPSPKGGLATPPPKGAPTTPAATPPSPKG-GLATPSPKGAPTTPAATPPSPKGGLA 1210
Query: 126 VEQRSSVTSSWTSGAWSPPCP------PSNASCNTLHTRDWASPDPGGQGSLGESPGPAP 179
S + T+ A +PP P PS T SP GG + P P
Sbjct: 1211 T---PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP-KGGPATPPPKGAPTP 1266
Query: 180 PGQL-HTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP-GPPGP 237
P +L L + G +P P SP P TPP P G PG
Sbjct: 1267 PAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT 1326
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDA----KATPFWSH----- 288
P K P P S + P S G PT +S + ATP SH
Sbjct: 1327 PPPKGAPTPPAVTPP-SPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATP--SHKGGPA 1383
Query: 289 -LLPGPK------EPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPV 339
P PK P DPT + K A ++ + G L+PP+ +PV
Sbjct: 1384 MTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Score = 47.0 bits (110), Expect = 4e-05
Identities = 91/366 (24%), Positives = 129/366 (35%), Gaps = 46/366 (12%)
Query: 6 AEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRA 65
A PSP P + PP +G L SP G T+P +PP+ P
Sbjct: 1210 ATPSPKGAPTTPAATPPSPKGGLATP-----SPKGAPTTPAA------TPPSPKGGPATP 1258
Query: 66 LKRQAPSTEG--PRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGL 123
+ AP+ P LK G +G P P+ V P+G G +
Sbjct: 1259 PPKGAPTPPAATPPSLKGGLATPPHKGAP--NPAVVTPPSPKG-GPATSPPKGAPTPPAA 1315
Query: 124 CVVEQRSSVTSSWTSGAWSPPC--PPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
+ S + GA +PP PPS TL +S GG + GP PP
Sbjct: 1316 TPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSS--KGGPTTPSSKEGPTPPA 1373
Query: 182 QL--HTLDTDLHSLAQIGGKSPVAGVGNGGS-----LWPRESPGTANGHSPEHTPPGPG- 233
H + + G + + G+ S L P+++P T TP
Sbjct: 1374 ATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDL 1433
Query: 234 -PPGPCPTKRRLLPAGEAP-----DVSSEEEGPAPRRRRGSLGHPTA----ANSSDAKAT 283
PP P + PA AP SS+ + P S P A A SS K
Sbjct: 1434 TPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKA 1493
Query: 284 PFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSL--RKGPGLLSP-----PSA 336
P + P P + P+ + +RR ++P +L +K P L+P P A
Sbjct: 1494 PATPAPMGAPTLPAVIPSSPKEV-PATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPA 1552
Query: 337 SPVPTP 342
VP+P
Sbjct: 1553 MTVPSP 1558
Score = 40.8 bits (94), Expect = 0.003
Identities = 87/375 (23%), Positives = 118/375 (31%), Gaps = 56/375 (14%)
Query: 4 VQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPG---VYQVSIFSPPAGTS 60
+ A PSP P + PP SP GG +P +PP+
Sbjct: 930 IPASPSPKGAPTPPAATPP--------------SPKGGPATPSPKWAPTPPAATPPSPKG 975
Query: 61 EPHRALKRQAPSTEG--PRELKRGPGLGAREGLP------PEEPSTVGLLGPEGPGLGLG 112
P + AP+ P K GP + +G P P P P G
Sbjct: 976 GPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTP 1035
Query: 113 VASQHFSHRGL-CVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSL 171
A+ S +G ++ + SP P+ S T A+P G
Sbjct: 1036 PAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPA 1095
Query: 172 GESPGPA-------PPGQLHTLDTDLHSLA-QIGGKSPVAGVGNGGSLWPRESPGTANGH 223
SP A PP L T H A +P + G + P+ +P T
Sbjct: 1096 TPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT---- 1151
Query: 224 SPEHTPPGP--GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAK 281
P TPP P G P P PA P P+P+ G PT ++
Sbjct: 1152 -PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPK------GAPTTPAAT--P 1202
Query: 282 ATPFWSHLLPGPKEPVLDPTDCGPMGR------RLKGARRLKLSPLRSLRKGPGLLSPPS 335
+P P PK P P + KGA + S + GP PP
Sbjct: 1203 PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPA-TPPPK 1261
Query: 336 ASPVPTPAVSRTLLG 350
+P P A +L G
Sbjct: 1262 GAPTPPAATPPSLKG 1276
Score = 37.0 bits (84), Expect = 0.046
Identities = 76/339 (22%), Positives = 120/339 (35%), Gaps = 39/339 (11%)
Query: 8 PSPSSEPEAG-PSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
PSP P P + P + + +P+ +P ++ I PPA TS +
Sbjct: 1556 PSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLI--PPAVTSPSPK-- 1611
Query: 67 KRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLL--GPEGP-------GLGLGVASQH 117
+ P P ++GP A +G P P T L P P G + AS+
Sbjct: 1612 EAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKG 1671
Query: 118 F-SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDP----GGQGSLG 172
+ +G +++ + ++ + P + + T PDP G +G L
Sbjct: 1672 LPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLS 1731
Query: 173 E-SPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSL------------WPRESPGT 219
+P P P Q + T A K P+A + S P + +
Sbjct: 1732 TVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVS 1791
Query: 220 ANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSD 279
A P P P P P K++ LP+ + S + AP L P
Sbjct: 1792 AAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELL--PLIPPEPI 1849
Query: 280 AKATPFWSHL--LPGPKE---PVLDPTDCGPMGRRLKGA 313
+ PF S L +P PK PV P+ P+ + KG+
Sbjct: 1850 SGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGS 1888
Score = 36.2 bits (82), Expect = 0.078
Identities = 65/261 (24%), Positives = 90/261 (34%), Gaps = 32/261 (12%)
Query: 96 PSTVGLLGPEGP--GLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCP---PSNA 150
P+ G GP+ P L V+ S + + S S T+ + +PP P P+ +
Sbjct: 809 PTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPS 868
Query: 151 SCNTLHTRDWA-----SPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV 205
+ L + +P P GPA P + S + ++ A
Sbjct: 869 AVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPK 928
Query: 206 GNGGSLWPRESPGTANGHSPEHTPPGP--GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPR 263
G S P+ +P P TPP P GP P P PA P S + GPA
Sbjct: 929 GIPASPSPKGAPTP-----PAATPPSPKGGPATPSPKWAPTPPAATPP---SPKGGPATP 980
Query: 264 RRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRS 323
+G+ P AA K P P PK P P + A +P
Sbjct: 981 SPKGA-PTPPAATPPSPKGGP----ATPSPKGAPTPPAVTPPSPKGSPAA-----TPFPK 1030
Query: 324 LRKGPGLLSPPS--ASPVPTP 342
P +PPS SP TP
Sbjct: 1031 GASTPPAATPPSPKGSPAATP 1051
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 52.0 bits (123), Expect = 1e-06
Identities = 101/389 (25%), Positives = 130/389 (33%), Gaps = 68/389 (17%)
Query: 38 PAGGATSPGVYQVSIFSPPAGTSEPHR---------ALKRQAPSTEGPRELKRGPGL--- 85
PAG PG + P T +P + A R AP +G + PG
Sbjct: 482 PAGARGEPG--NIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGV 539
Query: 86 --GAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCV---VEQRSSVTSSWTSGA 140
G E PP P GL GP GP +G + H + R SGA
Sbjct: 540 QGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGA 599
Query: 141 WSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKS 200
P P + + D +PG G++G + P G L + + GGK
Sbjct: 600 AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG----LPGERGAAGIPGGKG 655
Query: 201 PV------AGVGNGGSLWPRESPGTANGHSPEHT-----------PPGPGPPGPCPTKR- 242
+GN G R +PG P P GP P P +R
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERG 715
Query: 243 RLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTD 302
+ PAG + GPA G+ G P A AK P + + GP PV
Sbjct: 716 EVGPAG-----PNGFAGPA-----GAAGQPGAKGERGAKG-PKGENGVVGPTGPVGAAGP 764
Query: 303 CGPMG-------RRLKGARRLKLSPLRSLRKGP----GLLSPPSASPVPTPAVSRTLLGN 351
GP G R G + P + R GP G+ PP P PA L G
Sbjct: 765 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP---PGPAGKEGLRGP 821
Query: 352 FEESLLRGRFAPSGHI--EGFTAEIGASG 378
+ GR G + GF E G SG
Sbjct: 822 RGDQGPVGRTGEVGAVGPPGFAGEKGPSG 850
Score = 48.9 bits (115), Expect = 1e-05
Identities = 91/359 (25%), Positives = 107/359 (29%), Gaps = 56/359 (15%)
Query: 10 PSSEPEAGPSQPPVRQG-----ALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHR 64
P + E GP+ PP G L G Y G PG P G P
Sbjct: 50 PGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPG---------PMGLMGPR- 99
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRG 122
GP PG +G P EP G G GP G A +
Sbjct: 100 ----------GPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGK 149
Query: 123 LCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ 182
+R V G P P + D PG G GE P PG+
Sbjct: 150 PGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGE---PGAPGE 206
Query: 183 LHTL-DTDLHSL----AQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
T T L ++G P G+ GS+ P G P P PGP G
Sbjct: 207 NGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGE 266
Query: 238 CPTKRRLLPAGEA--------PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHL 289
PAG A P +S P G G AA P
Sbjct: 267 IGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPG---- 322
Query: 290 LPGPKEPVLDPTDCGPMGRR-LKGARRL--KLSPLRSLRKGPGLLSPPSASPVPTPAVS 345
LPGP+ GP+G GAR L + P S + P SA P P S
Sbjct: 323 LPGPRGIP------GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPS 375
Score = 41.6 bits (96), Expect = 0.002
Identities = 77/303 (25%), Positives = 99/303 (32%), Gaps = 47/303 (15%)
Query: 7 EPSPSSEP-EAGPSQPPVRQGALQGGLLMGYSPAGGATS-PGVYQVSIFSPPAGTSEPHR 64
E PS E AGP P QG L ++G + G PGV P G + P
Sbjct: 845 EKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPG 904
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLC 124
A R P G + PG R+G P G +GP G H RG
Sbjct: 905 A--RGPPGAVGSPGVNGAPGEAGRDGNP----------GNDGPP-GRDGQPGHKGERGY- 950
Query: 125 VVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLH 184
++ +GA P P A + S G G++G GP+ P +
Sbjct: 951 ----PGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR-GPSGPQGIR 1005
Query: 185 TLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRL 244
+ G K P G G + PG A H + P GP GP
Sbjct: 1006 G------DKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRG----- 1054
Query: 245 LPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCG 304
PAG + P + G GHP + + H GP P P G
Sbjct: 1055 -PAGPS----------GPAGKDGRTGHPGTVGPAGIRGPQ--GH--QGPAGPPGPPGPPG 1099
Query: 305 PMG 307
P G
Sbjct: 1100 PPG 1102
Score = 40.4 bits (93), Expect = 0.004
Identities = 101/407 (24%), Positives = 122/407 (29%), Gaps = 68/407 (16%)
Query: 17 GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGP 76
GPS PP P G PGV + P+G S +R A G
Sbjct: 610 GPSGPP--------------GPDGNKGEPGVVGAVGTAGPSGPSGLPG--ERGAAGIPGG 653
Query: 77 RELKRGPGLGAREGLPPEE-----PSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSS 131
+ K PGL G P + P VG GP G G A
Sbjct: 654 KGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAG------AAGPAGPAGP 707
Query: 132 VTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLH 191
S G P P A + A + G +G GE+ P G +
Sbjct: 708 RGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGP--- 764
Query: 192 SLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG----PGPPGPCPTKRRLLPA 247
G P G+GG PG A G + P G PGPPGP + P
Sbjct: 765 -AGPNGPPGPAGSRGDGGPPGMTGFPGAA-GRTGPPGPSGISGPPGPPGPAGKEGLRGPR 822
Query: 248 GEAPDVSSEEE----GP-------APRRRRGSLGHPTAANSSDAKATPFWSHL------- 289
G+ V E GP P G+ G P P L
Sbjct: 823 GDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGER 882
Query: 290 -LPGPKEPVLDPTD---CGPMGRR----LKGARRLKLSPLRSLRKG-PGLLSPPSASPVP 340
LPG V +P GP G R G+ + +P + R G PG PP P
Sbjct: 883 GLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQP 942
Query: 341 TPAVSRTLLGNFEESLLRGRFAPSGHI-----EGFTAEIGASGSYCP 382
R GN G P G + G E G SG P
Sbjct: 943 GHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGP 989
Score = 39.7 bits (91), Expect = 0.007
Identities = 97/359 (27%), Positives = 115/359 (32%), Gaps = 75/359 (20%)
Query: 4 VQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPH 63
V+ EP E P Q R + G + PAG S G P G + P
Sbjct: 197 VKGEPGAPGE-NGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVG------PVGPAGPI 249
Query: 64 RALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGL 123
+ GP PG P E VG GP GP
Sbjct: 250 --------GSAGPPGFPGAPG-------PKGEIGAVGNAGPAGPA--------------- 279
Query: 124 CVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQL 183
R V SG P PP N N L A+ PG G+ G PGP
Sbjct: 280 ---GPRGEVGLPGLSG---PVGPPGNPGANGLTGAKGAAGLPGVAGAPG-LPGPR----- 327
Query: 184 HTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTA-----NGHSPEHTPPGP-GPPGP 237
G PV G G+ PG A +G+ E GP GPPGP
Sbjct: 328 -------------GIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGP 374
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
+ + P GEA + P R GS G P A + P S GP
Sbjct: 375 SGEEGKRGPNGEAGS-AGPPGPPGLRGSPGSRGLPGADGRAGVMGPP-GSRGASGPAGVR 432
Query: 298 LDPTDCGPMGR-RLKGARRLKLSPLR---SLRKGPGLLSPPSASPVPT-PAVSRTLLGN 351
D G G L G R L SP + ++GP L P P PA +R GN
Sbjct: 433 GPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGN 491
Score = 37.0 bits (84), Expect = 0.046
Identities = 39/139 (28%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 150 ASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ---------------LHTLDTDLHSLA 194
A+C +L G +G GE P PPG+ + A
Sbjct: 20 ATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAA 79
Query: 195 QIGGKSPVAGVGNGGSLWPRESPGTANGHSPE--HTPPG-PGPPGPCPTKRRLLPAGEAP 251
Q GK G G G + PR PG A P+ P G PG PG PAG P
Sbjct: 80 QYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAG-PP 138
Query: 252 DVSSEEEGPAPRRRRGSLG 270
+ E+ P R G G
Sbjct: 139 GKAGEDGHPGKPGRPGERG 157
Score = 37.0 bits (84), Expect = 0.046
Identities = 31/111 (27%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 199 KSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEE 258
K P G G P PG P P PGPPGP + V
Sbjct: 32 KGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGL--- 88
Query: 259 GPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRR 309
GP P G G P AA + + GP +P GP G R
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQG-------FQGPAGEPGEPGQTGPAGAR 132
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 52.0 bits (123), Expect = 1e-06
Identities = 77/280 (27%), Positives = 101/280 (36%), Gaps = 31/280 (11%)
Query: 75 GPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTS 134
GP+ L PG + G PP E G G EG G+ GL V+ R +
Sbjct: 493 GPQGLPGAPGDQGQRG-PPGEAGPKGDRGAEG-ARGIPGLPGPKGDTGLPGVDGRDGIPG 550
Query: 135 S-WTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHS- 192
T G P PP +A L G G G + P PGQ+
Sbjct: 551 MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQG 610
Query: 193 -LAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP-----CPTKRRLL- 245
++G + P G+ G L P SPG +P PG PGP R ++
Sbjct: 611 PPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVG 670
Query: 246 -PAGEAPDVSSEEEGPAPRR-RRGSLGHP----TAANSSD-AKATPFWSHLLPGPKEPVL 298
P + +S EEG A R G +G P +A N + P S LPG + P
Sbjct: 671 EPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRG 730
Query: 299 DPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASP 338
P G G +GA L PG+ PP +P
Sbjct: 731 PPGPRGVQGE--QGATGL-----------PGVQGPPGRAP 757
Score = 44.7 bits (104), Expect = 2e-04
Identities = 76/290 (26%), Positives = 99/290 (34%), Gaps = 63/290 (21%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R V EP P E A + + G + + P G A +PG P E
Sbjct: 666 RGVVGEPGPKGEQGASGEEGEAGERGELGDIGLP-GPKGSAGNPG-------EPGLRGPE 717
Query: 62 PHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
R L P EGPR G G+ E+ +T GL G +GP G QH
Sbjct: 718 GSRGL----PGVEGPR------GPPGPRGVQGEQGAT-GLPGVQGPP-GRAPTDQHIKQV 765
Query: 122 GLCVVEQ----------RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSL 171
+ V+++ R ++ G PP PP N PG G
Sbjct: 766 CMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGF---------PGQMGIR 816
Query: 172 GESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNG--GSLWPRESPGTA----NGHSP 225
G PPG L L L + G + P NG G++ PG A NG
Sbjct: 817 GLPGIKGPPGALG-LRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 875
Query: 226 EHTPPG-------------PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAP 262
E PPG PG PG C + AG+ + +GP P
Sbjct: 876 ERGPPGVAGIPGVPGPPGPPGLPGFCEPASCTMQAGQ----RAFNKGPDP 921
Score = 36.6 bits (83), Expect = 0.060
Identities = 41/161 (25%), Positives = 54/161 (33%), Gaps = 35/161 (21%)
Query: 144 PCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ-----LHTLDTDLHSLAQIGG 198
P P +C+ L R S +G GE P PPG + +D D G
Sbjct: 244 PLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGP 303
Query: 199 KSPVAGVGNGGSLWPRESPGTANGHSPEHTP-----------PG------------PGPP 235
P G G+ +PG P+ +P PG PGPP
Sbjct: 304 PGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPP 363
Query: 236 GPCPTK------RRLLPAGEAPDVSSEEEGPAPRRRRGSLG 270
GP T R+ P G+ P P P RG++G
Sbjct: 364 GPPGTAGLPGELGRVGPVGD-PGRRGPPGPPGPPGPRGTIG 403
Score = 35.8 bits (81), Expect = 0.10
Identities = 57/211 (27%), Positives = 69/211 (32%), Gaps = 32/211 (15%)
Query: 38 PAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPS 97
P G PGV + G P P GP PG + G P +
Sbjct: 276 PPGPPGPPGVPGIDGIDGDRGPKGP--------PGPPGPAGEPGKPGAPGKPGTPGAD-- 325
Query: 98 TVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHT 157
GL GP+G +G Q +G V G PP PP A
Sbjct: 326 --GLTGPDGSPGSIGSKGQ----KGEPGVPGSRGFPGRGIPG---PPGPPGTAGLPGELG 376
Query: 158 RDWASPDPGGQGSLGESPGPAPPGQLHTLDTD-LHSLAQIGGKSPVAGV----GNGGSLW 212
R DPG +G G P P G + D D L A G+S G+ G+ G+
Sbjct: 377 RVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKG 436
Query: 213 PRESPGTANGHSPEHTPPG-------PGPPG 236
PG GH E G GPPG
Sbjct: 437 EIGEPG-RQGHKGEEGDQGELGEVGAQGPPG 466
Score = 32.7 bits (73), Expect = 0.86
Identities = 102/455 (22%), Positives = 129/455 (28%), Gaps = 121/455 (26%)
Query: 5 QAEPSPSSEP----------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFS 54
Q P P P + GP PP G PAG PG
Sbjct: 274 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPG-----------PAGEPGKPGAPGKPGTP 322
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVA 114
G + P + P + G + K PG+ G P G+ GP GP G+
Sbjct: 323 GADGLTGPDGS-----PGSIGSKGQKGEPGVPGSRGFPGR-----GIPGPPGPPGTAGLP 372
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP----------- 163
+ + + V G PP PP H D P
Sbjct: 373 GE---------LGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYP 423
Query: 164 -------------------------DPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQI-G 197
+ G QG LGE PPG L + I G
Sbjct: 424 GLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGA-----QGLRGITGIVG 478
Query: 198 GKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPG-------------PCPTKRR 243
K G G P+ PG A G + PPG GP G P P
Sbjct: 479 DKGEKGARGLDGEPGPQGLPG-APGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDT 537
Query: 244 LLPAGEA-------PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEP 296
LP + P E P P G G P AK P +P
Sbjct: 538 GLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKP 597
Query: 297 VL-----------DPTDCGPMGRRLKGARRLKLSPLRS--LRKGPGLLSPPSASPVPTPA 343
P + GP G + R +L P+ S L G L P +P P
Sbjct: 598 GQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPP 657
Query: 344 VSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
L G + + G P G +G + E G +G
Sbjct: 658 ---GLPGMKGDRGVVGEPGPKGE-QGASGEEGEAG 688
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 52.0 bits (123), Expect = 1e-06
Identities = 77/280 (27%), Positives = 101/280 (36%), Gaps = 31/280 (11%)
Query: 75 GPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTS 134
GP+ L PG + G PP E G G EG G+ GL V+ R +
Sbjct: 250 GPQGLPGAPGDQGQRG-PPGEAGPKGDRGAEG-ARGIPGLPGPKGDTGLPGVDGRDGIPG 307
Query: 135 S-WTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHS- 192
T G P PP +A L G G G + P PGQ+
Sbjct: 308 MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQG 367
Query: 193 -LAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP-----CPTKRRLL- 245
++G + P G+ G L P SPG +P PG PGP R ++
Sbjct: 368 PPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVG 427
Query: 246 -PAGEAPDVSSEEEGPAPRR-RRGSLGHP----TAANSSD-AKATPFWSHLLPGPKEPVL 298
P + +S EEG A R G +G P +A N + P S LPG + P
Sbjct: 428 EPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRG 487
Query: 299 DPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASP 338
P G G +GA L PG+ PP +P
Sbjct: 488 PPGPRGVQGE--QGATGL-----------PGVQGPPGRAP 514
Score = 44.7 bits (104), Expect = 2e-04
Identities = 76/290 (26%), Positives = 99/290 (34%), Gaps = 63/290 (21%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R V EP P E A + + G + + P G A +PG P E
Sbjct: 423 RGVVGEPGPKGEQGASGEEGEAGERGELGDIGLP-GPKGSAGNPG-------EPGLRGPE 474
Query: 62 PHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHR 121
R L P EGPR G G+ E+ +T GL G +GP G QH
Sbjct: 475 GSRGL----PGVEGPR------GPPGPRGVQGEQGAT-GLPGVQGPP-GRAPTDQHIKQV 522
Query: 122 GLCVVEQ----------RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSL 171
+ V+++ R ++ G PP PP N PG G
Sbjct: 523 CMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGF---------PGQMGIR 573
Query: 172 GESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNG--GSLWPRESPGTA----NGHSP 225
G PPG L L L + G + P NG G++ PG A NG
Sbjct: 574 GLPGIKGPPGALG-LRGPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRDG 632
Query: 226 EHTPPG-------------PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAP 262
E PPG PG PG C + AG+ + +GP P
Sbjct: 633 ERGPPGVAGIPGVPGPPGPPGLPGFCEPASCTMQAGQ----RAFNKGPDP 678
Score = 35.8 bits (81), Expect = 0.10
Identities = 57/211 (27%), Positives = 69/211 (32%), Gaps = 32/211 (15%)
Query: 38 PAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPS 97
P G PGV + G P P GP PG + G P +
Sbjct: 33 PPGPPGPPGVPGIDGIDGDRGPKGP--------PGPPGPAGEPGKPGAPGKPGTPGAD-- 82
Query: 98 TVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHT 157
GL GP+G +G Q +G V G PP PP A
Sbjct: 83 --GLTGPDGSPGSIGSKGQ----KGEPGVPGSRGFPGRGIPG---PPGPPGTAGLPGELG 133
Query: 158 RDWASPDPGGQGSLGESPGPAPPGQLHTLDTD-LHSLAQIGGKSPVAGV----GNGGSLW 212
R DPG +G G P P G + D D L A G+S G+ G+ G+
Sbjct: 134 RVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKG 193
Query: 213 PRESPGTANGHSPEHTPPG-------PGPPG 236
PG GH E G GPPG
Sbjct: 194 EIGEPG-RQGHKGEEGDQGELGEVGAQGPPG 223
Score = 34.3 bits (77), Expect = 0.30
Identities = 40/141 (28%), Positives = 45/141 (31%), Gaps = 27/141 (19%)
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
GLC+ + G PP PP + + PG G GE P PG
Sbjct: 17 GLCLCAAQRGPPGE--QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPG 74
Query: 182 QLHTLDTDL-----HSLAQIGGKSPVAGVGNGGSLW--------PRESPGTAN------- 221
+ T D S IG K G GS P PGTA
Sbjct: 75 KPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGR 134
Query: 222 ----GHSPEHTPPGP-GPPGP 237
G PPGP GPPGP
Sbjct: 135 VGPVGDPGRRGPPGPPGPPGP 155
Score = 32.7 bits (73), Expect = 0.86
Identities = 102/455 (22%), Positives = 129/455 (28%), Gaps = 121/455 (26%)
Query: 5 QAEPSPSSEP----------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFS 54
Q P P P + GP PP G PAG PG
Sbjct: 31 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPG-----------PAGEPGKPGAPGKPGTP 79
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVA 114
G + P + P + G + K PG+ G P G+ GP GP G+
Sbjct: 80 GADGLTGPDGS-----PGSIGSKGQKGEPGVPGSRGFPGR-----GIPGPPGPPGTAGLP 129
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP----------- 163
+ + + V G PP PP H D P
Sbjct: 130 GE---------LGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYP 180
Query: 164 -------------------------DPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQI-G 197
+ G QG LGE PPG L + I G
Sbjct: 181 GLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGA-----QGLRGITGIVG 235
Query: 198 GKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG-PGPPG-------------PCPTKRR 243
K G G P+ PG A G + PPG GP G P P
Sbjct: 236 DKGEKGARGLDGEPGPQGLPG-APGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDT 294
Query: 244 LLPAGEA-------PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEP 296
LP + P E P P G G P AK P +P
Sbjct: 295 GLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKP 354
Query: 297 VL-----------DPTDCGPMGRRLKGARRLKLSPLRS--LRKGPGLLSPPSASPVPTPA 343
P + GP G + R +L P+ S L G L P +P P
Sbjct: 355 GQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPP 414
Query: 344 VSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
L G + + G P G +G + E G +G
Sbjct: 415 ---GLPGMKGDRGVVGEPGPKGE-QGASGEEGEAG 445
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 51.2 bits (121), Expect = 2e-06
Identities = 105/398 (26%), Positives = 131/398 (32%), Gaps = 78/398 (19%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R V +P P + GP+ P +GA G PG S P G
Sbjct: 882 RGVAGKPGPRGQ--RGPTGPRGSRGA-----------RGPTGKPGPKGTSGGDGPPGPPG 928
Query: 62 PHRALKRQAP-STEGPRELKRGPGLGAREGLPPE-----EPSTVGLLGPEGPGLGLGVAS 115
Q P GP K PG ++GLP E G GP GPG GV
Sbjct: 929 ERGPQGPQGPVGFPGP---KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG---GVVG 982
Query: 116 QHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESP 175
+ +R G PP PP ++ A DPG QG G+
Sbjct: 983 PQGPTGETGPIGER---------GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD- 1032
Query: 176 GPAP----PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG 231
GPA PG+ L + GG+ P G GS R S GTA P
Sbjct: 1033 GPAGLRGFPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGP 1091
Query: 232 PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRR-RGSLGHPTAANSSDAKATPFWSHLL 290
GPPGP K P + P +GPA R +G +G L
Sbjct: 1092 QGPPGPAGEKG--APGEKGP------QGPAGRDGVQGPVG-------------------L 1124
Query: 291 PGPKEPVLDPTDCGPMGR-RLKGARRLKLSPLRSLRKGPGLLSPPSASP-------VPTP 342
PGP P P + G G G + K + GP L P +P P P
Sbjct: 1125 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1184
Query: 343 AVSRTLLGNFEESLLRGRFAPSGHI--EGFTAEIGASG 378
+ + G + RG P G I +G G G
Sbjct: 1185 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1222
Score = 48.1 bits (113), Expect = 2e-05
Identities = 96/357 (26%), Positives = 118/357 (33%), Gaps = 71/357 (19%)
Query: 17 GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPP--AGTSEP--HRALKRQA-- 70
GP PP G++ GG+ P G A +PG PP AG P R K +A
Sbjct: 1249 GPQGPPGSVGSV-GGVGEKGEP-GEAGNPG--------PPGEAGVGGPKGERGEKGEAGP 1298
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP K PG + P P VG G GP G A Q
Sbjct: 1299 PGAAGPPGAKGPPG----DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1354
Query: 131 SVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDL 190
SG PP PP A G +G+ GE+ PPG+ +
Sbjct: 1355 QPGPPGPSGEAGPPGPPGKRGPPGAAG---AEGRQGEKGAKGEAGAEGPPGKTGPVGPQ- 1410
Query: 191 HSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP-GPPGPCPTKRRLLPAGE 249
G P G G + + PG A + PPGP GPPG LP +
Sbjct: 1411 ---GPAGKPGPEGLRGIPGPVGEQGLPGAAG----QDGPPGPMGPPG--------LPGLK 1455
Query: 250 APDVSSEEEG----------PAPRRRRGSLGHPTAANSSDAKAT-----------PFWSH 288
S E+G P + +G G P S AK P
Sbjct: 1456 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1515
Query: 289 LLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVS 345
LPGP+ P + GP G+ KG L PG PP P P +S
Sbjct: 1516 GLPGPQGPKGNKGSTGPAGQ--KGD--------SGLPGPPGSPGPPGEVIQPLPILS 1562
Score = 47.0 bits (110), Expect = 4e-05
Identities = 71/261 (27%), Positives = 90/261 (34%), Gaps = 47/261 (18%)
Query: 31 GLLMGYSPAGGATSPGVYQVS----------IFSPPAGTSEPHRALKRQAPSTEGPRELK 80
GL P GG S G S + PP T +P KR P +G R +
Sbjct: 547 GLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---KRGRPGADGGRGMP 603
Query: 81 RGPGL-GAR--EGLP--PEEPSTVGLLGPEGP-----GLGLGVASQHFSHRGLC-VVEQR 129
PG G R +GLP P + G GP+GP G+ RGL R
Sbjct: 604 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 663
Query: 130 SSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTD 189
+ T GA P P A + PG +G++G P PPGQ
Sbjct: 664 GLLGPRGTPGA---PGQPGMAGVDG---------PPGPKGNMGPQGEPGPPGQQGNPGPQ 711
Query: 190 LHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGE 249
G P +G G P+ PG A + P PG G K L P G
Sbjct: 712 -------GLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 764
Query: 250 APDVSSEEEGPAPRRRRGSLG 270
+ P PR +G+ G
Sbjct: 765 QGPIGY----PGPRGVKGADG 781
Score = 45.8 bits (107), Expect = 1e-04
Identities = 86/311 (27%), Positives = 101/311 (32%), Gaps = 77/311 (24%)
Query: 5 QAEPSPSSEP----EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
Q P P+ E E GP P R G +QG + + PAG A SPG
Sbjct: 1092 QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGLP-GPAGPAGSPGED-----GDKGEIG 1144
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEG-PGLGLGVASQHFS 119
EP + + GP PG PP GL GP G PG+ G
Sbjct: 1145 EPGQKGSKGDKGENGP------PG-------PP------GLQGPVGAPGIAGGDGEP--G 1183
Query: 120 HRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP 179
RG Q+ GA P PP L + G G +G P P
Sbjct: 1184 PRG-----QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGP 1238
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCP 239
G D G + P VG+ G + + PG A PGPPG
Sbjct: 1239 RGPQGPNGAD-------GPQGPPGSVGSVGGVGEKGEPGEAG---------NPGPPGEAG 1282
Query: 240 TKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK---EP 296
P GE R +G G P AA AK P GPK P
Sbjct: 1283 VGG---PKGE-------------RGEKGEAGPPGAAGPPGAKGPPGDD----GPKGNPGP 1322
Query: 297 VLDPTDCGPMG 307
V P D GP G
Sbjct: 1323 VGFPGDPGPPG 1333
Score = 45.1 bits (105), Expect = 2e-04
Identities = 107/422 (25%), Positives = 140/422 (33%), Gaps = 65/422 (15%)
Query: 7 EPSPSSEP--EAGPSQPP---VRQGALQGGLLMGYSPAGGATSPGVYQVSIF-SPPAGTS 60
E P+S P E GP P + + ++ G Y G P V + + P G +
Sbjct: 402 EDKPTSPPNEEFGPGVPAETDITETSINGH--GAYGEKGQKGEPAVVEPGMLVEGPPGPA 459
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH 120
P + P +GP PG G P P GL GP G L L
Sbjct: 460 GPAGIMG--PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGS 516
Query: 121 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGP- 177
+G + Q + + + PP L R PG G+ GES PGP
Sbjct: 517 KGPTISAQEAQAQAILQQARIALRGPPGPMG---LTGRPGPVGGPGSSGAKGESGDPGPQ 573
Query: 178 ------APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN--GHSPEHTP 229
PPG A GG+ G G PG GH E P
Sbjct: 574 GPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 632
Query: 230 PGP-GPPGPCPTKR-------RLLPAGEA-----------------PDVSSEEEGPAPRR 264
GP GPPG + R LP GEA P ++ + P P+
Sbjct: 633 QGPPGPPGDDGMRGEDGEIGPRGLP-GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG 691
Query: 265 RRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSP 320
G G P LPGP+ P+ P + GP G+ L GA P
Sbjct: 692 NMGPQGEPGPPGQQGNPGPQG----LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 747
Query: 321 LRSLRKG-PGLLSPPS-ASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGA 376
+ + G G L PP P+ P R + G L+G G GF ++G
Sbjct: 748 GKEGQSGEKGALGPPGPQGPIGYPG-PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 806
Query: 377 SG 378
G
Sbjct: 807 KG 808
Score = 45.1 bits (105), Expect = 2e-04
Identities = 82/315 (26%), Positives = 98/315 (31%), Gaps = 57/315 (18%)
Query: 9 SPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVY-QVSIFSPPAGTSEPHRALK 67
S + E GP PP QG + + AGG PG Q +F
Sbjct: 1151 SKGDKGENGPPGPPGLQGPVGAPGI-----AGGDGEPGPRGQQGMFGQKGDEGA------ 1199
Query: 68 RQAPSTEGPRELKRGPGLGAREGL-----PPEEPSTVGLLGPEGPGLGLGVASQHFSHRG 122
R P GP L+ PG +G P P G GP+GP G S
Sbjct: 1200 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS--- 1256
Query: 123 LCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ 182
V V G P PP A + G G+ G PPG
Sbjct: 1257 ---VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1313
Query: 183 LHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN-----GHSPEHTPPG-PGPPG 236
G K VG G P PG A G E PG PGPPG
Sbjct: 1314 -------------DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG 1360
Query: 237 PCPTKRRLLPAGEA--PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK 294
P+GEA P + P G G A + A+ P + + GP+
Sbjct: 1361 ---------PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV-GPQ 1410
Query: 295 EPVLDPTDCGPMGRR 309
P P GP G R
Sbjct: 1411 GPAGKP---GPEGLR 1422
Score = 42.7 bits (99), Expect = 8e-04
Identities = 109/425 (25%), Positives = 132/425 (31%), Gaps = 65/425 (15%)
Query: 2 RHVQAEPSPSSEP-------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFS 54
R Q P P + E GP P G GLL G PG+ V
Sbjct: 630 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQPGMAGVDGPP 687
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLP-PEEP-STVGLLGPEG-PGL-G 110
P G P GP + PG +GLP P+ P G GP+G PGL G
Sbjct: 688 GPKGNMGPQ--------GEPGPPGQQGNPG---PQGLPGPQGPIGPPGEKGPQGKPGLAG 736
Query: 111 LGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASC---NTLHTRDWASPDPGG 167
L A H G S GA PP P + D G
Sbjct: 737 LPGADGPPGHPG--------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 788
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKS------------------PVAGVGNGG 209
+G GE P G + L D + QIG + P G G
Sbjct: 789 KGEKGEDGFPGFKGDMG-LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 847
Query: 210 SLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSL 269
L PG P+ + PG PG K AG+ P + PR RG+
Sbjct: 848 KLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGAR 906
Query: 270 G-----HPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSL 324
G P + D P GP+ PV P GP G G L P +
Sbjct: 907 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGKDGLPGHPGQRG 964
Query: 325 RKG-PGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGASGSYC 381
G G PP V P G E G P G + G + GA G
Sbjct: 965 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1024
Query: 382 PQHVT 386
PQ ++
Sbjct: 1025 PQGIS 1029
Score = 31.2 bits (69), Expect = 2.5
Identities = 65/238 (27%), Positives = 80/238 (33%), Gaps = 40/238 (16%)
Query: 166 GGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT--ANGH 223
GG GS GP Q L A+I + P +G G P PG+ A G
Sbjct: 512 GGDGS----KGPTISAQEAQAQAILQQ-ARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 566
Query: 224 SPEHTPPGP----GPPGPC--PTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANS 277
S + P GP GPPGP P KR A + E P + RG G P
Sbjct: 567 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE---PGAKGDRGFDGLPGLPGD 623
Query: 278 SDAKATPFWSHLLPGPKEPVLDPTD---------CGPMGRRLKGARRLKLSPLRSLRKGP 328
+ GP+ P P D GP G + R L P R P
Sbjct: 624 KGHRGE-------RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP----RGTP 672
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEE---SLLRGRFAPSGHIEGFTAEIGASGSYCPQ 383
G P + V P + +G E +G P G + G IG G PQ
Sbjct: 673 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG-LPGPQGPIGPPGEKGPQ 729
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 51.2 bits (121), Expect = 2e-06
Identities = 105/398 (26%), Positives = 131/398 (32%), Gaps = 78/398 (19%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R V +P P + GP+ P +GA G PG S P G
Sbjct: 831 RGVAGKPGPRGQ--RGPTGPRGSRGA-----------RGPTGKPGPKGTSGGDGPPGPPG 877
Query: 62 PHRALKRQAP-STEGPRELKRGPGLGAREGLPPE-----EPSTVGLLGPEGPGLGLGVAS 115
Q P GP K PG ++GLP E G GP GPG GV
Sbjct: 878 ERGPQGPQGPVGFPGP---KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG---GVVG 931
Query: 116 QHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESP 175
+ +R G PP PP ++ A DPG QG G+
Sbjct: 932 PQGPTGETGPIGER---------GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD- 981
Query: 176 GPAP----PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG 231
GPA PG+ L + GG+ P G GS R S GTA P
Sbjct: 982 GPAGLRGFPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGP 1040
Query: 232 PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRR-RGSLGHPTAANSSDAKATPFWSHLL 290
GPPGP K P + P +GPA R +G +G L
Sbjct: 1041 QGPPGPAGEKG--APGEKGP------QGPAGRDGVQGPVG-------------------L 1073
Query: 291 PGPKEPVLDPTDCGPMGR-RLKGARRLKLSPLRSLRKGPGLLSPPSASP-------VPTP 342
PGP P P + G G G + K + GP L P +P P P
Sbjct: 1074 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1133
Query: 343 AVSRTLLGNFEESLLRGRFAPSGHI--EGFTAEIGASG 378
+ + G + RG P G I +G G G
Sbjct: 1134 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1171
Score = 48.1 bits (113), Expect = 2e-05
Identities = 96/357 (26%), Positives = 118/357 (33%), Gaps = 71/357 (19%)
Query: 17 GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPP--AGTSEP--HRALKRQA-- 70
GP PP G++ GG+ P G A +PG PP AG P R K +A
Sbjct: 1198 GPQGPPGSVGSV-GGVGEKGEP-GEAGNPG--------PPGEAGVGGPKGERGEKGEAGP 1247
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP K PG + P P VG G GP G A Q
Sbjct: 1248 PGAAGPPGAKGPPG----DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1303
Query: 131 SVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDL 190
SG PP PP A G +G+ GE+ PPG+ +
Sbjct: 1304 QPGPPGPSGEAGPPGPPGKRGPPGAAG---AEGRQGEKGAKGEAGAEGPPGKTGPVGPQ- 1359
Query: 191 HSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP-GPPGPCPTKRRLLPAGE 249
G P G G + + PG A + PPGP GPPG LP +
Sbjct: 1360 ---GPAGKPGPEGLRGIPGPVGEQGLPGAAG----QDGPPGPMGPPG--------LPGLK 1404
Query: 250 APDVSSEEEG----------PAPRRRRGSLGHPTAANSSDAKAT-----------PFWSH 288
S E+G P + +G G P S AK P
Sbjct: 1405 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1464
Query: 289 LLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVS 345
LPGP+ P + GP G+ KG L PG PP P P +S
Sbjct: 1465 GLPGPQGPKGNKGSTGPAGQ--KGD--------SGLPGPPGSPGPPGEVIQPLPILS 1511
Score = 47.0 bits (110), Expect = 4e-05
Identities = 71/261 (27%), Positives = 90/261 (34%), Gaps = 47/261 (18%)
Query: 31 GLLMGYSPAGGATSPGVYQVS----------IFSPPAGTSEPHRALKRQAPSTEGPRELK 80
GL P GG S G S + PP T +P KR P +G R +
Sbjct: 496 GLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---KRGRPGADGGRGMP 552
Query: 81 RGPGL-GAR--EGLP--PEEPSTVGLLGPEGP-----GLGLGVASQHFSHRGLC-VVEQR 129
PG G R +GLP P + G GP+GP G+ RGL R
Sbjct: 553 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 612
Query: 130 SSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTD 189
+ T GA P P A + PG +G++G P PPGQ
Sbjct: 613 GLLGPRGTPGA---PGQPGMAGVDG---------PPGPKGNMGPQGEPGPPGQQGNPGPQ 660
Query: 190 LHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGE 249
G P +G G P+ PG A + P PG G K L P G
Sbjct: 661 -------GLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 713
Query: 250 APDVSSEEEGPAPRRRRGSLG 270
+ P PR +G+ G
Sbjct: 714 QGPIGY----PGPRGVKGADG 730
Score = 45.8 bits (107), Expect = 1e-04
Identities = 86/311 (27%), Positives = 101/311 (32%), Gaps = 77/311 (24%)
Query: 5 QAEPSPSSEP----EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
Q P P+ E E GP P R G +QG + + PAG A SPG
Sbjct: 1041 QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGLP-GPAGPAGSPGED-----GDKGEIG 1093
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEG-PGLGLGVASQHFS 119
EP + + GP PG PP GL GP G PG+ G
Sbjct: 1094 EPGQKGSKGDKGENGP------PG-------PP------GLQGPVGAPGIAGGDGEP--G 1132
Query: 120 HRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP 179
RG Q+ GA P PP L + G G +G P P
Sbjct: 1133 PRG-----QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGP 1187
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCP 239
G D G + P VG+ G + + PG A PGPPG
Sbjct: 1188 RGPQGPNGAD-------GPQGPPGSVGSVGGVGEKGEPGEAG---------NPGPPGEAG 1231
Query: 240 TKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK---EP 296
P GE R +G G P AA AK P GPK P
Sbjct: 1232 VGG---PKGE-------------RGEKGEAGPPGAAGPPGAKGPPGDD----GPKGNPGP 1271
Query: 297 VLDPTDCGPMG 307
V P D GP G
Sbjct: 1272 VGFPGDPGPPG 1282
Score = 45.1 bits (105), Expect = 2e-04
Identities = 107/422 (25%), Positives = 140/422 (33%), Gaps = 65/422 (15%)
Query: 7 EPSPSSEP--EAGPSQPP---VRQGALQGGLLMGYSPAGGATSPGVYQVSIF-SPPAGTS 60
E P+S P E GP P + + ++ G Y G P V + + P G +
Sbjct: 351 EDKPTSPPNEEFGPGVPAETDITETSINGH--GAYGEKGQKGEPAVVEPGMLVEGPPGPA 408
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH 120
P + P +GP PG G P P GL GP G L L
Sbjct: 409 GPAGIMG--PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGS 465
Query: 121 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGP- 177
+G + Q + + + PP L R PG G+ GES PGP
Sbjct: 466 KGPTISAQEAQAQAILQQARIALRGPPGPMG---LTGRPGPVGGPGSSGAKGESGDPGPQ 522
Query: 178 ------APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN--GHSPEHTP 229
PPG A GG+ G G PG GH E P
Sbjct: 523 GPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 581
Query: 230 PGP-GPPGPCPTKR-------RLLPAGEA-----------------PDVSSEEEGPAPRR 264
GP GPPG + R LP GEA P ++ + P P+
Sbjct: 582 QGPPGPPGDDGMRGEDGEIGPRGLP-GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG 640
Query: 265 RRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSP 320
G G P LPGP+ P+ P + GP G+ L GA P
Sbjct: 641 NMGPQGEPGPPGQQGNPGPQG----LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 696
Query: 321 LRSLRKG-PGLLSPPS-ASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGA 376
+ + G G L PP P+ P R + G L+G G GF ++G
Sbjct: 697 GKEGQSGEKGALGPPGPQGPIGYPG-PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 755
Query: 377 SG 378
G
Sbjct: 756 KG 757
Score = 45.1 bits (105), Expect = 2e-04
Identities = 82/315 (26%), Positives = 98/315 (31%), Gaps = 57/315 (18%)
Query: 9 SPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVY-QVSIFSPPAGTSEPHRALK 67
S + E GP PP QG + + AGG PG Q +F
Sbjct: 1100 SKGDKGENGPPGPPGLQGPVGAPGI-----AGGDGEPGPRGQQGMFGQKGDEGA------ 1148
Query: 68 RQAPSTEGPRELKRGPGLGAREGL-----PPEEPSTVGLLGPEGPGLGLGVASQHFSHRG 122
R P GP L+ PG +G P P G GP+GP G S
Sbjct: 1149 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS--- 1205
Query: 123 LCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ 182
V V G P PP A + G G+ G PPG
Sbjct: 1206 ---VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1262
Query: 183 LHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN-----GHSPEHTPPG-PGPPG 236
G K VG G P PG A G E PG PGPPG
Sbjct: 1263 -------------DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG 1309
Query: 237 PCPTKRRLLPAGEA--PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK 294
P+GEA P + P G G A + A+ P + + GP+
Sbjct: 1310 ---------PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV-GPQ 1359
Query: 295 EPVLDPTDCGPMGRR 309
P P GP G R
Sbjct: 1360 GPAGKP---GPEGLR 1371
Score = 42.7 bits (99), Expect = 8e-04
Identities = 109/425 (25%), Positives = 132/425 (31%), Gaps = 65/425 (15%)
Query: 2 RHVQAEPSPSSEP-------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFS 54
R Q P P + E GP P G GLL G PG+ V
Sbjct: 579 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQPGMAGVDGPP 636
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLP-PEEP-STVGLLGPEG-PGL-G 110
P G P GP + PG +GLP P+ P G GP+G PGL G
Sbjct: 637 GPKGNMGPQ--------GEPGPPGQQGNPG---PQGLPGPQGPIGPPGEKGPQGKPGLAG 685
Query: 111 LGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASC---NTLHTRDWASPDPGG 167
L A H G S GA PP P + D G
Sbjct: 686 LPGADGPPGHPG--------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 737
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKS------------------PVAGVGNGG 209
+G GE P G + L D + QIG + P G G
Sbjct: 738 KGEKGEDGFPGFKGDMG-LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 796
Query: 210 SLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSL 269
L PG P+ + PG PG K AG+ P + PR RG+
Sbjct: 797 KLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGAR 855
Query: 270 G-----HPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSL 324
G P + D P GP+ PV P GP G G L P +
Sbjct: 856 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGKDGLPGHPGQRG 913
Query: 325 RKG-PGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGASGSYC 381
G G PP V P G E G P G + G + GA G
Sbjct: 914 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 973
Query: 382 PQHVT 386
PQ ++
Sbjct: 974 PQGIS 978
Score = 31.2 bits (69), Expect = 2.5
Identities = 65/238 (27%), Positives = 80/238 (33%), Gaps = 40/238 (16%)
Query: 166 GGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT--ANGH 223
GG GS GP Q L A+I + P +G G P PG+ A G
Sbjct: 461 GGDGS----KGPTISAQEAQAQAILQQ-ARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 515
Query: 224 SPEHTPPGP----GPPGPC--PTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANS 277
S + P GP GPPGP P KR A + E P + RG G P
Sbjct: 516 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE---PGAKGDRGFDGLPGLPGD 572
Query: 278 SDAKATPFWSHLLPGPKEPVLDPTD---------CGPMGRRLKGARRLKLSPLRSLRKGP 328
+ GP+ P P D GP G + R L P R P
Sbjct: 573 KGHRGE-------RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP----RGTP 621
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEE---SLLRGRFAPSGHIEGFTAEIGASGSYCPQ 383
G P + V P + +G E +G P G + G IG G PQ
Sbjct: 622 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG-LPGPQGPIGPPGEKGPQ 678
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 51.2 bits (121), Expect = 2e-06
Identities = 105/398 (26%), Positives = 131/398 (32%), Gaps = 78/398 (19%)
Query: 2 RHVQAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSE 61
R V +P P + GP+ P +GA G PG S P G
Sbjct: 870 RGVAGKPGPRGQ--RGPTGPRGSRGA-----------RGPTGKPGPKGTSGGDGPPGPPG 916
Query: 62 PHRALKRQAP-STEGPRELKRGPGLGAREGLPPE-----EPSTVGLLGPEGPGLGLGVAS 115
Q P GP K PG ++GLP E G GP GPG GV
Sbjct: 917 ERGPQGPQGPVGFPGP---KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPG---GVVG 970
Query: 116 QHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESP 175
+ +R G PP PP ++ A DPG QG G+
Sbjct: 971 PQGPTGETGPIGER---------GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD- 1020
Query: 176 GPAP----PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPG 231
GPA PG+ L + GG+ P G GS R S GTA P
Sbjct: 1021 GPAGLRGFPGE-RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGP 1079
Query: 232 PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRR-RGSLGHPTAANSSDAKATPFWSHLL 290
GPPGP K P + P +GPA R +G +G L
Sbjct: 1080 QGPPGPAGEKG--APGEKGP------QGPAGRDGVQGPVG-------------------L 1112
Query: 291 PGPKEPVLDPTDCGPMGR-RLKGARRLKLSPLRSLRKGPGLLSPPSASP-------VPTP 342
PGP P P + G G G + K + GP L P +P P P
Sbjct: 1113 PGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1172
Query: 343 AVSRTLLGNFEESLLRGRFAPSGHI--EGFTAEIGASG 378
+ + G + RG P G I +G G G
Sbjct: 1173 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKG 1210
Score = 48.1 bits (113), Expect = 2e-05
Identities = 96/357 (26%), Positives = 118/357 (33%), Gaps = 71/357 (19%)
Query: 17 GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPP--AGTSEP--HRALKRQA-- 70
GP PP G++ GG+ P G A +PG PP AG P R K +A
Sbjct: 1237 GPQGPPGSVGSV-GGVGEKGEP-GEAGNPG--------PPGEAGVGGPKGERGEKGEAGP 1286
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P GP K PG + P P VG G GP G A Q
Sbjct: 1287 PGAAGPPGAKGPPG----DDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPG 1342
Query: 131 SVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDL 190
SG PP PP A G +G+ GE+ PPG+ +
Sbjct: 1343 QPGPPGPSGEAGPPGPPGKRGPPGAAG---AEGRQGEKGAKGEAGAEGPPGKTGPVGPQ- 1398
Query: 191 HSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP-GPPGPCPTKRRLLPAGE 249
G P G G + + PG A + PPGP GPPG LP +
Sbjct: 1399 ---GPAGKPGPEGLRGIPGPVGEQGLPGAAG----QDGPPGPMGPPG--------LPGLK 1443
Query: 250 APDVSSEEEG----------PAPRRRRGSLGHPTAANSSDAKAT-----------PFWSH 288
S E+G P + +G G P S AK P
Sbjct: 1444 GDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1503
Query: 289 LLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVS 345
LPGP+ P + GP G+ KG L PG PP P P +S
Sbjct: 1504 GLPGPQGPKGNKGSTGPAGQ--KGD--------SGLPGPPGSPGPPGEVIQPLPILS 1550
Score = 47.0 bits (110), Expect = 4e-05
Identities = 71/261 (27%), Positives = 90/261 (34%), Gaps = 47/261 (18%)
Query: 31 GLLMGYSPAGGATSPGVYQVS----------IFSPPAGTSEPHRALKRQAPSTEGPRELK 80
GL P GG S G S + PP T +P KR P +G R +
Sbjct: 535 GLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPG---KRGRPGADGGRGMP 591
Query: 81 RGPGL-GAR--EGLP--PEEPSTVGLLGPEGP-----GLGLGVASQHFSHRGLC-VVEQR 129
PG G R +GLP P + G GP+GP G+ RGL R
Sbjct: 592 GEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR 651
Query: 130 SSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTD 189
+ T GA P P A + PG +G++G P PPGQ
Sbjct: 652 GLLGPRGTPGA---PGQPGMAGVDG---------PPGPKGNMGPQGEPGPPGQQGNPGPQ 699
Query: 190 LHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGE 249
G P +G G P+ PG A + P PG G K L P G
Sbjct: 700 -------GLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGP 752
Query: 250 APDVSSEEEGPAPRRRRGSLG 270
+ P PR +G+ G
Sbjct: 753 QGPIGY----PGPRGVKGADG 769
Score = 45.8 bits (107), Expect = 1e-04
Identities = 86/311 (27%), Positives = 101/311 (32%), Gaps = 77/311 (24%)
Query: 5 QAEPSPSSEP----EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTS 60
Q P P+ E E GP P R G +QG + + PAG A SPG
Sbjct: 1080 QGPPGPAGEKGAPGEKGPQGPAGRDG-VQGPVGLP-GPAGPAGSPGED-----GDKGEIG 1132
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEG-PGLGLGVASQHFS 119
EP + + GP PG PP GL GP G PG+ G
Sbjct: 1133 EPGQKGSKGDKGENGP------PG-------PP------GLQGPVGAPGIAGGDGEP--G 1171
Query: 120 HRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP 179
RG Q+ GA P PP L + G G +G P P
Sbjct: 1172 PRG-----QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGP 1226
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCP 239
G D G + P VG+ G + + PG A PGPPG
Sbjct: 1227 RGPQGPNGAD-------GPQGPPGSVGSVGGVGEKGEPGEAG---------NPGPPGEAG 1270
Query: 240 TKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK---EP 296
P GE R +G G P AA AK P GPK P
Sbjct: 1271 VGG---PKGE-------------RGEKGEAGPPGAAGPPGAKGPPGDD----GPKGNPGP 1310
Query: 297 VLDPTDCGPMG 307
V P D GP G
Sbjct: 1311 VGFPGDPGPPG 1321
Score = 45.1 bits (105), Expect = 2e-04
Identities = 107/422 (25%), Positives = 140/422 (33%), Gaps = 65/422 (15%)
Query: 7 EPSPSSEP--EAGPSQPP---VRQGALQGGLLMGYSPAGGATSPGVYQVSIF-SPPAGTS 60
E P+S P E GP P + + ++ G Y G P V + + P G +
Sbjct: 390 EDKPTSPPNEEFGPGVPAETDITETSINGH--GAYGEKGQKGEPAVVEPGMLVEGPPGPA 447
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSH 120
P + P +GP PG G P P GL GP G L L
Sbjct: 448 GPAGIMG--PPGLQGPTGPPGDPGDRGPPGRPGL-PGADGLPGPPGTMLMLPFRYGGDGS 504
Query: 121 RGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGP- 177
+G + Q + + + PP L R PG G+ GES PGP
Sbjct: 505 KGPTISAQEAQAQAILQQARIALRGPPGPMG---LTGRPGPVGGPGSSGAKGESGDPGPQ 561
Query: 178 ------APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN--GHSPEHTP 229
PPG A GG+ G G PG GH E P
Sbjct: 562 GPRGVQGPPGPTGKPGKRGRPGAD-GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 620
Query: 230 PGP-GPPGPCPTKR-------RLLPAGEA-----------------PDVSSEEEGPAPRR 264
GP GPPG + R LP GEA P ++ + P P+
Sbjct: 621 QGPPGPPGDDGMRGEDGEIGPRGLP-GEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKG 679
Query: 265 RRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGR----RLKGARRLKLSP 320
G G P LPGP+ P+ P + GP G+ L GA P
Sbjct: 680 NMGPQGEPGPPGQQGNPGPQG----LPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHP 735
Query: 321 LRSLRKG-PGLLSPPS-ASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGA 376
+ + G G L PP P+ P R + G L+G G GF ++G
Sbjct: 736 GKEGQSGEKGALGPPGPQGPIGYPG-PRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 794
Query: 377 SG 378
G
Sbjct: 795 KG 796
Score = 45.1 bits (105), Expect = 2e-04
Identities = 82/315 (26%), Positives = 98/315 (31%), Gaps = 57/315 (18%)
Query: 9 SPSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVY-QVSIFSPPAGTSEPHRALK 67
S + E GP PP QG + + AGG PG Q +F
Sbjct: 1139 SKGDKGENGPPGPPGLQGPVGAPGI-----AGGDGEPGPRGQQGMFGQKGDEGA------ 1187
Query: 68 RQAPSTEGPRELKRGPGLGAREGL-----PPEEPSTVGLLGPEGPGLGLGVASQHFSHRG 122
R P GP L+ PG +G P P G GP+GP G S
Sbjct: 1188 RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGS--- 1244
Query: 123 LCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQ 182
V V G P PP A + G G+ G PPG
Sbjct: 1245 ---VGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1301
Query: 183 LHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN-----GHSPEHTPPG-PGPPG 236
G K VG G P PG A G E PG PGPPG
Sbjct: 1302 -------------DGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG 1348
Query: 237 PCPTKRRLLPAGEA--PDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPK 294
P+GEA P + P G G A + A+ P + + GP+
Sbjct: 1349 ---------PSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV-GPQ 1398
Query: 295 EPVLDPTDCGPMGRR 309
P P GP G R
Sbjct: 1399 GPAGKP---GPEGLR 1410
Score = 42.7 bits (99), Expect = 8e-04
Identities = 109/425 (25%), Positives = 132/425 (31%), Gaps = 65/425 (15%)
Query: 2 RHVQAEPSPSSEP-------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFS 54
R Q P P + E GP P G GLL G PG+ V
Sbjct: 618 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPR--GLLGPRGTPGAPGQPGMAGVDGPP 675
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLP-PEEP-STVGLLGPEG-PGL-G 110
P G P GP + PG +GLP P+ P G GP+G PGL G
Sbjct: 676 GPKGNMGPQ--------GEPGPPGQQGNPG---PQGLPGPQGPIGPPGEKGPQGKPGLAG 724
Query: 111 LGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASC---NTLHTRDWASPDPGG 167
L A H G S GA PP P + D G
Sbjct: 725 LPGADGPPGHPG--------KEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS 776
Query: 168 QGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKS------------------PVAGVGNGG 209
+G GE P G + L D + QIG + P G G
Sbjct: 777 KGEKGEDGFPGFKGDMG-LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 835
Query: 210 SLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSL 269
L PG P+ + PG PG K AG+ P + PR RG+
Sbjct: 836 KLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGK-PGPRGQRGPTGPRGSRGAR 894
Query: 270 G-----HPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSL 324
G P + D P GP+ PV P GP G G L P +
Sbjct: 895 GPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGKDGLPGHPGQRG 952
Query: 325 RKG-PGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGASGSYC 381
G G PP V P G E G P G + G + GA G
Sbjct: 953 ETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1012
Query: 382 PQHVT 386
PQ ++
Sbjct: 1013 PQGIS 1017
Score = 31.2 bits (69), Expect = 2.5
Identities = 65/238 (27%), Positives = 80/238 (33%), Gaps = 40/238 (16%)
Query: 166 GGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT--ANGH 223
GG GS GP Q L A+I + P +G G P PG+ A G
Sbjct: 500 GGDGS----KGPTISAQEAQAQAILQQ-ARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 554
Query: 224 SPEHTPPGP----GPPGPC--PTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANS 277
S + P GP GPPGP P KR A + E P + RG G P
Sbjct: 555 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGE---PGAKGDRGFDGLPGLPGD 611
Query: 278 SDAKATPFWSHLLPGPKEPVLDPTD---------CGPMGRRLKGARRLKLSPLRSLRKGP 328
+ GP+ P P D GP G + R L P R P
Sbjct: 612 KGHRGE-------RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP----RGTP 660
Query: 329 GLLSPPSASPVPTPAVSRTLLGNFEE---SLLRGRFAPSGHIEGFTAEIGASGSYCPQ 383
G P + V P + +G E +G P G + G IG G PQ
Sbjct: 661 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQG-LPGPQGPIGPPGEKGPQ 717
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 51.2 bits (121), Expect = 2e-06
Identities = 101/346 (29%), Positives = 119/346 (34%), Gaps = 53/346 (15%)
Query: 8 PSPSSEPE---AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHR 64
P P EP GP PP G +G L P G PG PP P R
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPG-FKGAL----GPKGDRGFPG--------PPG---PPGR 788
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLP----PEEPSTVGLLGPEG-PGL-GLGVASQHF 118
P +G PG GLP P G+ GP G PGL G+
Sbjct: 789 TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDP 848
Query: 119 SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA 178
GL V S GA P PP + L + AS PG +G +G P
Sbjct: 849 GPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPG 905
Query: 179 PPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
PPG L I G+S V G+ G+ G PG + P PGPPGP
Sbjct: 906 PPGPL-----------GIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 238 CPTKRRLLPAGE--APDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE 295
L GE P + P+ +G G P S LPGP
Sbjct: 955 M-DPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPG-------LPGPPG 1006
Query: 296 PVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP-GLLSPPSASPVP 340
P +P G G L G LK + GP G+ PP S VP
Sbjct: 1007 PKGNPGLPGQPG--LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVP 1050
Score = 45.4 bits (106), Expect = 1e-04
Identities = 86/309 (27%), Positives = 107/309 (34%), Gaps = 66/309 (21%)
Query: 40 GGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTV 99
G PG+ + + PP P AP T G L+ PG G P EP
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPG-PKGEPG-F 753
Query: 100 GLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRD 159
L GP GP GL +G G PP PP + L
Sbjct: 754 ALPGPPGPP-GLPGFKGALGPKG--------------DRGFPGPPGPPGRTGLDGL---- 794
Query: 160 WASPDPGGQGSLGES--PGP-APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRES 216
PG +G +G + PGP PPG L IG + P G G P
Sbjct: 795 -----PGPKGDVGPNGQPGPMGPPG-----------LPGIGVQGPPGPPGIPG---PIGQ 835
Query: 217 PGTAN--GHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTA 274
PG G + PPG PGP P +R +P + P P GS G P
Sbjct: 836 PGLHGIPGEKGDPGPPGLDVPGP-PGER------GSPGIPG---APGPIGPPGSPGLPGK 885
Query: 275 ANSSDAKATPFWSHLL--PGPKEPVLDPTDCGPMGRRLKGARRLKLSP-------LRSLR 325
A +S T ++ PGP P+ P G G LKG L+ P + +
Sbjct: 886 AGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG--LKGDDGLQGQPGLPGPTGEKGSK 943
Query: 326 KGPGLLSPP 334
PGL PP
Sbjct: 944 GEPGLPGPP 952
Score = 42.7 bits (99), Expect = 8e-04
Identities = 108/422 (25%), Positives = 135/422 (31%), Gaps = 90/422 (21%)
Query: 8 PSPSS-EPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
P P E GPS P + G+ GL G PG+ + + P EP
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGS--PGLP---GQKGDKGDPGISSIGLPGLPGPKGEPGLPG 1089
Query: 67 KRQAPSTEGP------RELKRGPGLGAREGLP-----PEEPSTVGLLGPEG-PGLGLGVA 114
P +G L PG + GLP P P G+ GP G PGL
Sbjct: 1090 YPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP---- 1145
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
+ V G PP + + P P GQ
Sbjct: 1146 ------------GEPGPVGGGGHPGQPGPPGEKGKPGQDGI-------PGPAGQKGEPGQ 1186
Query: 175 PG---PAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPP 230
PG P PPG L L+ G + G+ GN G P+ PG +G PP
Sbjct: 1187 PGFGNPGPPG--------LPGLSGQKGDGGLPGIPGNPGLPGPKGEPGF-HGFPGVQGPP 1237
Query: 231 GP-GPPGPCPTKRRLLPAGEAPDVSSEEEG----PAPRRRRGSLGHPTAANSSDAKATPF 285
GP G PGP + P + P G P P G G P K P
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGP---EGPPGLPGNGGIKGEKGNPG 1294
Query: 286 WSHL--LPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG------------ 327
L LPG K P G GR +KG L P KG
Sbjct: 1295 QPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEG 1354
Query: 328 -PGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVT 386
PGL+ PP +P P + + +++G P G I G G G PQ +
Sbjct: 1355 EPGLIGPPGPPGLPGP--------SGQSIIIKGDAGPPG-IPGQPGLKGLPGPQGPQGLP 1405
Query: 387 LP 388
P
Sbjct: 1406 GP 1407
Score = 39.3 bits (90), Expect = 0.009
Identities = 64/250 (25%), Positives = 80/250 (32%), Gaps = 35/250 (14%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
P GP+ G G P P P G +GP GP G G V +
Sbjct: 584 PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPP-GFGPPGP---------VGE 633
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP-DPGGQGSLGESPGPAPPGQLHTLD 187
+ + G P P + P +PG G +G P PGQ
Sbjct: 634 KGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ----- 688
Query: 188 TDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTP--------PGP-GPPGPC 238
L + G+ + G+G G P+ PG TP PGP G PGP
Sbjct: 689 PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK 748
Query: 239 PTKRRLLPAGEAPDVSSEEEGP-APRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
LP P +G P+ RG G P + LPGPK V
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDG-------LPGPKGDV 801
Query: 298 LDPTDCGPMG 307
GPMG
Sbjct: 802 GPNGQPGPMG 811
Score = 35.8 bits (81), Expect = 0.10
Identities = 47/156 (30%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 92 PPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNAS 151
PP +P GL GP G LG Q + GA P P S
Sbjct: 492 PPGQPGLPGLPGPPG---SLGFPGQKGEKGQAGATGPKGLPGIPGAPGA--PGFPGSKGE 546
Query: 152 CNTLHTRDWASPDPGGQGSLGESPG----PAPPGQLHTLDTDLHSLAQIGGKSPVAGVGN 207
+ T D G GS G +PG P PGQ L L G K G+
Sbjct: 547 PGDILTFPGMKGDKGELGSPG-APGLPGLPGTPGQ-----DGLPGLP--GPKGEPGGITF 598
Query: 208 GGSLWPRESPGTAN--GHSPEHTPPGPGPPGPCPTK 241
G P +PG G+ PPG GPPGP K
Sbjct: 599 KGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEK 634
Score = 33.9 bits (76), Expect = 0.39
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 4 VQAEPSPSSEPEA-GPSQPPVRQGALQGGLLM--GYSPAGGATSPGVYQVSIFSPPAGTS 60
V P EP GP PP G +++ P G PG+ + P G
Sbjct: 1346 VPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1405
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGP 107
P P G L G G R+G P P +P T GL GP GP
Sbjct: 1406 GP-----TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGP 1449
Score = 30.8 bits (68), Expect = 3.3
Identities = 58/246 (23%), Positives = 72/246 (29%), Gaps = 70/246 (28%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEG-PGLGLGVASQHFSHRGLCVVE 127
P GP+ ++ PGL G P P P G GP+G PG +G
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCN--------GTKG----- 129
Query: 128 QRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLD 187
+R S G PP PP S PG +G+ G P PPG
Sbjct: 130 ERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGY---PGPPG------ 180
Query: 188 TDLHSL-AQIGGKSPVAGVGNGGSLWPRESPGTAN----------------GHSPEHTPP 230
+ L G P+ G G + P PG G PP
Sbjct: 181 --IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 231 GP--------------------------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRR 264
GP GPPGP + P G E+ P R
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 265 RRGSLG 270
+ G G
Sbjct: 299 KPGKDG 304
Score = 30.4 bits (67), Expect = 4.3
Identities = 56/216 (25%), Positives = 71/216 (32%), Gaps = 55/216 (25%)
Query: 165 PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGH 223
PG +G G+ P PPG L G + G+ G+ G+ P+ PG NG
Sbjct: 71 PGPRGQKGDDGIPGPPGPKGIRGPP--GLPGFPGTPGLPGMPGHDGAPGPQGIPG-CNGT 127
Query: 224 SPEHTPPGP-------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAAN 276
E PG GPPGP G + S GP +G+ G+P
Sbjct: 128 KGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSI--IMSSLPGP-----KGNPGYPGPPG 180
Query: 277 SSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSA 336
LPGP P GP G PGL+ PP
Sbjct: 181 IQG----------LPGPTGI---PGPIGPPGP-------------------PGLMGPPGP 208
Query: 337 SPVPTPAVSRTL-----LGNFEESLLRGRFAPSGHI 367
+P P + L G E L+G P G I
Sbjct: 209 PGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQI 244
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 51.2 bits (121), Expect = 2e-06
Identities = 101/346 (29%), Positives = 119/346 (34%), Gaps = 53/346 (15%)
Query: 8 PSPSSEPE---AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHR 64
P P EP GP PP G +G L P G PG PP P R
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPG-FKGAL----GPKGDRGFPG--------PPG---PPGR 788
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLP----PEEPSTVGLLGPEG-PGL-GLGVASQHF 118
P +G PG GLP P G+ GP G PGL G+
Sbjct: 789 TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDP 848
Query: 119 SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA 178
GL V S GA P PP + L + AS PG +G +G P
Sbjct: 849 GPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPG 905
Query: 179 PPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
PPG L I G+S V G+ G+ G PG + P PGPPGP
Sbjct: 906 PPGPL-----------GIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 238 CPTKRRLLPAGE--APDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE 295
L GE P + P+ +G G P S LPGP
Sbjct: 955 M-DPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPG-------LPGPPG 1006
Query: 296 PVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP-GLLSPPSASPVP 340
P +P G G L G LK + GP G+ PP S VP
Sbjct: 1007 PKGNPGLPGQPG--LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVP 1050
Score = 45.4 bits (106), Expect = 1e-04
Identities = 86/309 (27%), Positives = 107/309 (34%), Gaps = 66/309 (21%)
Query: 40 GGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTV 99
G PG+ + + PP P AP T G L+ PG G P EP
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPG-PKGEPG-F 753
Query: 100 GLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRD 159
L GP GP GL +G G PP PP + L
Sbjct: 754 ALPGPPGPP-GLPGFKGALGPKG--------------DRGFPGPPGPPGRTGLDGL---- 794
Query: 160 WASPDPGGQGSLGES--PGP-APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRES 216
PG +G +G + PGP PPG L IG + P G G P
Sbjct: 795 -----PGPKGDVGPNGQPGPMGPPG-----------LPGIGVQGPPGPPGIPG---PIGQ 835
Query: 217 PGTAN--GHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTA 274
PG G + PPG PGP P +R +P + P P GS G P
Sbjct: 836 PGLHGIPGEKGDPGPPGLDVPGP-PGER------GSPGIPG---APGPIGPPGSPGLPGK 885
Query: 275 ANSSDAKATPFWSHLL--PGPKEPVLDPTDCGPMGRRLKGARRLKLSP-------LRSLR 325
A +S T ++ PGP P+ P G G LKG L+ P + +
Sbjct: 886 AGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG--LKGDDGLQGQPGLPGPTGEKGSK 943
Query: 326 KGPGLLSPP 334
PGL PP
Sbjct: 944 GEPGLPGPP 952
Score = 44.3 bits (103), Expect = 3e-04
Identities = 107/418 (25%), Positives = 134/418 (32%), Gaps = 88/418 (21%)
Query: 8 PSPSS-EPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
P P E GPS P + G+ GL G PG+ + + P EP
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGS--PGLP---GQKGDKGDPGISSIGLPGLPGPKGEPGLPG 1089
Query: 67 KRQAPSTEGP------RELKRGPGLGAREGLP-----PEEPSTVGLLGPEG-PGLGLGVA 114
P +G L PG + GLP P P G+ GP G PGL
Sbjct: 1090 YPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP---- 1145
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
+ V G PP + + P P GQ
Sbjct: 1146 ------------GEPGPVGGGGHPGQPGPPGEKGKPGQDGI-------PGPAGQKGEPGQ 1186
Query: 175 PG---PAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPP 230
PG P PPG L L+ G + G+ GN G P+ PG +G PP
Sbjct: 1187 PGFGNPGPPG--------LPGLSGQKGDGGLPGIPGNPGLPGPKGEPGF-HGFPGVQGPP 1237
Query: 231 GP-GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHL 289
GP G PGP + P + P GP G G P K P L
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGLPGP-----EGPPGLPGNGGIKGEKGNPGQPGL 1292
Query: 290 --LPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG-------------PGL 330
LPG K P G GR +KG L P KG PGL
Sbjct: 1293 PGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGL 1352
Query: 331 LSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLP 388
+ PP +P P + + +++G P G I G G G PQ + P
Sbjct: 1353 IGPPGPPGLPGP--------SGQSIIIKGDAGPPG-IPGQPGLKGLPGPQGPQGLPGP 1401
Score = 39.3 bits (90), Expect = 0.009
Identities = 64/250 (25%), Positives = 80/250 (32%), Gaps = 35/250 (14%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
P GP+ G G P P P G +GP GP G G V +
Sbjct: 584 PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPP-GFGPPGP---------VGE 633
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP-DPGGQGSLGESPGPAPPGQLHTLD 187
+ + G P P + P +PG G +G P PGQ
Sbjct: 634 KGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ----- 688
Query: 188 TDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTP--------PGP-GPPGPC 238
L + G+ + G+G G P+ PG TP PGP G PGP
Sbjct: 689 PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK 748
Query: 239 PTKRRLLPAGEAPDVSSEEEGP-APRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
LP P +G P+ RG G P + LPGPK V
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDG-------LPGPKGDV 801
Query: 298 LDPTDCGPMG 307
GPMG
Sbjct: 802 GPNGQPGPMG 811
Score = 35.8 bits (81), Expect = 0.10
Identities = 47/156 (30%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 92 PPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNAS 151
PP +P GL GP G LG Q + GA P P S
Sbjct: 492 PPGQPGLPGLPGPPG---SLGFPGQKGEKGQAGATGPKGLPGIPGAPGA--PGFPGSKGE 546
Query: 152 CNTLHTRDWASPDPGGQGSLGESPG----PAPPGQLHTLDTDLHSLAQIGGKSPVAGVGN 207
+ T D G GS G +PG P PGQ L L G K G+
Sbjct: 547 PGDILTFPGMKGDKGELGSPG-APGLPGLPGTPGQ-----DGLPGLP--GPKGEPGGITF 598
Query: 208 GGSLWPRESPGTAN--GHSPEHTPPGPGPPGPCPTK 241
G P +PG G+ PPG GPPGP K
Sbjct: 599 KGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEK 634
Score = 33.9 bits (76), Expect = 0.39
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 4 VQAEPSPSSEPEA-GPSQPPVRQGALQGGLLM--GYSPAGGATSPGVYQVSIFSPPAGTS 60
V P EP GP PP G +++ P G PG+ + P G
Sbjct: 1340 VPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1399
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGP 107
P P G L G G R+G P P +P T GL GP GP
Sbjct: 1400 GP-----TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGP 1443
Score = 30.8 bits (68), Expect = 3.3
Identities = 58/246 (23%), Positives = 72/246 (29%), Gaps = 70/246 (28%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEG-PGLGLGVASQHFSHRGLCVVE 127
P GP+ ++ PGL G P P P G GP+G PG +G
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCN--------GTKG----- 129
Query: 128 QRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLD 187
+R S G PP PP S PG +G+ G P PPG
Sbjct: 130 ERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGY---PGPPG------ 180
Query: 188 TDLHSL-AQIGGKSPVAGVGNGGSLWPRESPGTAN----------------GHSPEHTPP 230
+ L G P+ G G + P PG G PP
Sbjct: 181 --IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 231 GP--------------------------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRR 264
GP GPPGP + P G E+ P R
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 265 RRGSLG 270
+ G G
Sbjct: 299 KPGKDG 304
Score = 30.4 bits (67), Expect = 4.3
Identities = 56/216 (25%), Positives = 71/216 (32%), Gaps = 55/216 (25%)
Query: 165 PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGH 223
PG +G G+ P PPG L G + G+ G+ G+ P+ PG NG
Sbjct: 71 PGPRGQKGDDGIPGPPGPKGIRGPP--GLPGFPGTPGLPGMPGHDGAPGPQGIPG-CNGT 127
Query: 224 SPEHTPPGP-------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAAN 276
E PG GPPGP G + S GP +G+ G+P
Sbjct: 128 KGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSI--IMSSLPGP-----KGNPGYPGPPG 180
Query: 277 SSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSA 336
LPGP P GP G PGL+ PP
Sbjct: 181 IQG----------LPGPTGI---PGPIGPPGP-------------------PGLMGPPGP 208
Query: 337 SPVPTPAVSRTL-----LGNFEESLLRGRFAPSGHI 367
+P P + L G E L+G P G I
Sbjct: 209 PGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQI 244
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 51.2 bits (121), Expect = 2e-06
Identities = 101/346 (29%), Positives = 119/346 (34%), Gaps = 53/346 (15%)
Query: 8 PSPSSEPE---AGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHR 64
P P EP GP PP G +G L P G PG PP P R
Sbjct: 745 PGPKGEPGFALPGPPGPPGLPG-FKGAL----GPKGDRGFPG--------PPG---PPGR 788
Query: 65 ALKRQAPSTEGPRELKRGPGLGAREGLP----PEEPSTVGLLGPEG-PGL-GLGVASQHF 118
P +G PG GLP P G+ GP G PGL G+
Sbjct: 789 TGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDP 848
Query: 119 SHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA 178
GL V S GA P PP + L + AS PG +G +G P
Sbjct: 849 GPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG---LPGKAGASGFPGTKGEMGMMGPPG 905
Query: 179 PPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
PPG L I G+S V G+ G+ G PG + P PGPPGP
Sbjct: 906 PPGPL-----------GIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 238 CPTKRRLLPAGE--APDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE 295
L GE P + P+ +G G P S LPGP
Sbjct: 955 M-DPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPG-------LPGPPG 1006
Query: 296 PVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGP-GLLSPPSASPVP 340
P +P G G L G LK + GP G+ PP S VP
Sbjct: 1007 PKGNPGLPGQPG--LIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVP 1050
Score = 45.4 bits (106), Expect = 1e-04
Identities = 86/309 (27%), Positives = 107/309 (34%), Gaps = 66/309 (21%)
Query: 40 GGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTV 99
G PG+ + + PP P AP T G L+ PG G P EP
Sbjct: 696 GSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPG-PKGEPG-F 753
Query: 100 GLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRD 159
L GP GP GL +G G PP PP + L
Sbjct: 754 ALPGPPGPP-GLPGFKGALGPKG--------------DRGFPGPPGPPGRTGLDGL---- 794
Query: 160 WASPDPGGQGSLGES--PGP-APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRES 216
PG +G +G + PGP PPG L IG + P G G P
Sbjct: 795 -----PGPKGDVGPNGQPGPMGPPG-----------LPGIGVQGPPGPPGIPG---PIGQ 835
Query: 217 PGTAN--GHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTA 274
PG G + PPG PGP P +R +P + P P GS G P
Sbjct: 836 PGLHGIPGEKGDPGPPGLDVPGP-PGER------GSPGIPG---APGPIGPPGSPGLPGK 885
Query: 275 ANSSDAKATPFWSHLL--PGPKEPVLDPTDCGPMGRRLKGARRLKLSP-------LRSLR 325
A +S T ++ PGP P+ P G G LKG L+ P + +
Sbjct: 886 AGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPG--LKGDDGLQGQPGLPGPTGEKGSK 943
Query: 326 KGPGLLSPP 334
PGL PP
Sbjct: 944 GEPGLPGPP 952
Score = 44.3 bits (103), Expect = 3e-04
Identities = 108/419 (25%), Positives = 136/419 (32%), Gaps = 87/419 (20%)
Query: 8 PSPSS-EPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
P P E GPS P + G+ GL G PG+ + + P EP
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGS--PGLP---GQKGDKGDPGISSIGLPGLPGPKGEPGLPG 1089
Query: 67 KRQAPSTEGP------RELKRGPGLGAREGLP-----PEEPSTVGLLGPEG-PGLGLGVA 114
P +G L PG + GLP P P G+ GP G PGL
Sbjct: 1090 YPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLP---- 1145
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
+ V G PP + + P P GQ
Sbjct: 1146 ------------GEPGPVGGGGHPGQPGPPGEKGKPGQDGI-------PGPAGQKGEPGQ 1186
Query: 175 PG---PAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGHSPEHTPP 230
PG P PPG L L+ G + G+ GN G P+ PG +G PP
Sbjct: 1187 PGFGNPGPPG--------LPGLSGQKGDGGLPGIPGNPGLPGPKGEPGF-HGFPGVQGPP 1237
Query: 231 GP-GPPGPCPTKRRLLPAGEAPDVSSEEEG-PAPRRRRGSLGHPTAANSSDAKATPFWSH 288
GP G PGP + P + P +G P P G G P K P
Sbjct: 1238 GPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGP---EGPPGLPGNGGIKGEKGNPGQPG 1294
Query: 289 L--LPGPKEPVLDPTDCGPMGR----RLKGARRLKLSPLRSLRKG-------------PG 329
L LPG K P G GR +KG L P KG PG
Sbjct: 1295 LPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPG 1354
Query: 330 LLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLP 388
L+ PP +P P + + +++G P G I G G G PQ + P
Sbjct: 1355 LIGPPGPPGLPGP--------SGQSIIIKGDAGPPG-IPGQPGLKGLPGPQGPQGLPGP 1404
Score = 39.3 bits (90), Expect = 0.009
Identities = 64/250 (25%), Positives = 80/250 (32%), Gaps = 35/250 (14%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
P GP+ G G P P P G +GP GP G G V +
Sbjct: 584 PGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPP-GFGPPGP---------VGE 633
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP-DPGGQGSLGESPGPAPPGQLHTLD 187
+ + G P P + P +PG G +G P PGQ
Sbjct: 634 KGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ----- 688
Query: 188 TDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTP--------PGP-GPPGPC 238
L + G+ + G+G G P+ PG TP PGP G PGP
Sbjct: 689 PGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK 748
Query: 239 PTKRRLLPAGEAPDVSSEEEGP-APRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
LP P +G P+ RG G P + LPGPK V
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDG-------LPGPKGDV 801
Query: 298 LDPTDCGPMG 307
GPMG
Sbjct: 802 GPNGQPGPMG 811
Score = 35.8 bits (81), Expect = 0.10
Identities = 47/156 (30%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 92 PPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNAS 151
PP +P GL GP G LG Q + GA P P S
Sbjct: 492 PPGQPGLPGLPGPPG---SLGFPGQKGEKGQAGATGPKGLPGIPGAPGA--PGFPGSKGE 546
Query: 152 CNTLHTRDWASPDPGGQGSLGESPG----PAPPGQLHTLDTDLHSLAQIGGKSPVAGVGN 207
+ T D G GS G +PG P PGQ L L G K G+
Sbjct: 547 PGDILTFPGMKGDKGELGSPG-APGLPGLPGTPGQ-----DGLPGLP--GPKGEPGGITF 598
Query: 208 GGSLWPRESPGTAN--GHSPEHTPPGPGPPGPCPTK 241
G P +PG G+ PPG GPPGP K
Sbjct: 599 KGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEK 634
Score = 33.9 bits (76), Expect = 0.39
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 4 VQAEPSPSSEPEA-GPSQPPVRQGALQGGLLM--GYSPAGGATSPGVYQVSIFSPPAGTS 60
V P EP GP PP G +++ P G PG+ + P G
Sbjct: 1343 VPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1402
Query: 61 EPHRALKRQAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGP 107
P P G L G G R+G P P +P T GL GP GP
Sbjct: 1403 GP-----TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGP 1446
Score = 30.8 bits (68), Expect = 3.3
Identities = 58/246 (23%), Positives = 72/246 (29%), Gaps = 70/246 (28%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEG-PGLGLGVASQHFSHRGLCVVE 127
P GP+ ++ PGL G P P P G GP+G PG +G
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCN--------GTKG----- 129
Query: 128 QRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLD 187
+R S G PP PP S PG +G+ G P PPG
Sbjct: 130 ERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGY---PGPPG------ 180
Query: 188 TDLHSL-AQIGGKSPVAGVGNGGSLWPRESPGTAN----------------GHSPEHTPP 230
+ L G P+ G G + P PG G PP
Sbjct: 181 --IQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP 238
Query: 231 GP--------------------------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRR 264
GP GPPGP + P G E+ P R
Sbjct: 239 GPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRG 298
Query: 265 RRGSLG 270
+ G G
Sbjct: 299 KPGKDG 304
Score = 30.4 bits (67), Expect = 4.3
Identities = 56/216 (25%), Positives = 71/216 (32%), Gaps = 55/216 (25%)
Query: 165 PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGTANGH 223
PG +G G+ P PPG L G + G+ G+ G+ P+ PG NG
Sbjct: 71 PGPRGQKGDDGIPGPPGPKGIRGPP--GLPGFPGTPGLPGMPGHDGAPGPQGIPG-CNGT 127
Query: 224 SPEHTPPGP-------GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAAN 276
E PG GPPGP G + S GP +G+ G+P
Sbjct: 128 KGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSI--IMSSLPGP-----KGNPGYPGPPG 180
Query: 277 SSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSA 336
LPGP P GP G PGL+ PP
Sbjct: 181 IQG----------LPGPTGI---PGPIGPPGP-------------------PGLMGPPGP 208
Query: 337 SPVPTPAVSRTL-----LGNFEESLLRGRFAPSGHI 367
+P P + L G E L+G P G I
Sbjct: 209 PGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQI 244
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 51.2 bits (121), Expect = 2e-06
Identities = 96/369 (26%), Positives = 122/369 (33%), Gaps = 82/369 (22%)
Query: 8 PSPSSEP-EAGPSQP--PVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHR 64
P P P AG S P P +QG G+ GA PGV ++ G P R
Sbjct: 141 PGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGA--PGVPGMNGQKGEMGYGAPGR 198
Query: 65 ALKRQAPSTEGPRELKRGPGLGAR--EGLP-----------PEEPSTVGLLGPEGP---- 107
+R P +GP PG+G R G+P P E +G GP+GP
Sbjct: 199 PGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGER 258
Query: 108 ---GLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPD 164
G+G A+ G+ + G PP PP + P
Sbjct: 259 GPEGIGKPGAAGAPGQPGI-----PGTKGLPGAPGIAGPPGPPG-----------FGKPG 302
Query: 165 -PGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGH 223
PG +G G + P PG G + P G G P PG
Sbjct: 303 LPGLKGERGPAGLPGGPGAK-------------GEQGPAGLPGKPGLTGP---PGNMGPQ 346
Query: 224 SPEHTPPGPGPPGPCPTKRRLLPAGEA--PDVSSEEEGPAPRRRRGSLGHPTAANSSDAK 281
P+ P G PGP K PAG A P E P G G+P K
Sbjct: 347 GPKGIPGSHGLPGP---KGETGPAGPAGYPGAKGERGSPG---SDGKPGYPGKPGLDGPK 400
Query: 282 ATPFWSHLLPGPK------EPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPS 335
P LPGPK P P GP G + + P R PG+ P +
Sbjct: 401 GNPG----LPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGP----RGAPGI--PGT 450
Query: 336 ASPVPTPAV 344
P+ P +
Sbjct: 451 RGPIGPPGI 459
Score = 50.4 bits (119), Expect = 4e-06
Identities = 75/280 (26%), Positives = 97/280 (34%), Gaps = 59/280 (21%)
Query: 10 PSSEPEAGPSQPPVRQGALQGGLLMG-YSPAGGATSPGVYQVSIFSPPAGTSE-PHRALK 67
P ++ E GP+ P + G MG P G S G+ + PAG + P +
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGE 378
Query: 68 RQAPSTEGPRELKRGPGLGAREGLP--------PEEPSTVGLLGPEGPGLGLGVASQHFS 119
R +P ++G PGL +G P P GL GP GP G+
Sbjct: 379 RGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPG---- 434
Query: 120 HRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP 179
H G R + T G PP PG GS G+ P P
Sbjct: 435 HNG--EAGPRGAPGIPGTRGPIGPP------------------GIPGFPGSKGDPGSPGP 474
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP-GPPGP- 237
PG + +A G G P PG GHS E PGP GPPGP
Sbjct: 475 PGP-----------------AGIATKGLNGPTGPPGPPGP-RGHSGEPGLPGPPGPPGPP 516
Query: 238 --CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAA 275
+ AG+ P +S P +G G P +A
Sbjct: 517 GQAVMPEGFIKAGQRPSLSGT---PLVSANQGVTGMPVSA 553
Score = 35.4 bits (80), Expect = 0.13
Identities = 49/189 (25%), Positives = 65/189 (34%), Gaps = 21/189 (11%)
Query: 162 SPDPGGQGSLGESPGP-APPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTA 220
+P P G PGP PPG+ L + G + VG G PG
Sbjct: 61 TPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGER 120
Query: 221 NGHSPEHTP-----PGP-GPPGP--CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP 272
+ P+ PGP GPPGP P + G+ P P PR G G P
Sbjct: 121 GPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGK-PGQQGPTGAPGPRGFPGEKGAP 179
Query: 273 TAANSSDAKATPFW-------SHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSP-LRSL 324
+ K + LPGP+ P GP G +G + P ++
Sbjct: 180 GVPGMNGQKGEMGYGAPGRPGERGLPGPQGPT---GPSGPPGVGKRGENGVPGQPGIKGD 236
Query: 325 RKGPGLLSP 333
R PG + P
Sbjct: 237 RGFPGEMGP 245
Score = 29.3 bits (64), Expect = 9.5
Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 291 PGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLG 350
PGP P P GP G+ G SP L+ PGL PP S V P V L G
Sbjct: 65 PGPAGPRGHPGPSGPPGKPGYG------SP--GLQGEPGLPGPPGPSAVGKPGVP-GLPG 115
Query: 351 NFEESLLRGRFAPSGHI 367
E RG + P G +
Sbjct: 116 KPGE---RGPYGPKGDV 129
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 50.8 bits (120), Expect = 3e-06
Identities = 51/159 (32%), Positives = 62/159 (38%), Gaps = 27/159 (16%)
Query: 157 TRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRES 216
T P G GS E+PGP+P G D S ++ G P G+ + P E+
Sbjct: 504 TEGRTGPKEGTPGSPSETPGPSPAGPAG--DEPAESPSETPGPRPAGPAGDEPAESPSET 561
Query: 217 PGT----ANGHSPEHTP---PGPGPPGP-----------CPTKRRLLPAGEAPDVS-SEE 257
PG G P +P PGP P GP P R PAG+ P S SE
Sbjct: 562 PGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSET 621
Query: 258 EGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEP 296
GP P G G A + S+ TP S P EP
Sbjct: 622 PGPRP---AGPAGDEPAESPSE---TPGPSPAGPTRDEP 654
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 170 SLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN----GHSP 225
S E+PGP+P G T D S ++ G P G+ + P E+PG G P
Sbjct: 577 SPSETPGPSPAGP--TRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEP 634
Query: 226 EHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEE 257
+P PGP PT+ AGEA ++ E
Sbjct: 635 AESPSETPGPSPAGPTRDEPAKAGEAAELQDAE 667
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 50.8 bits (120), Expect = 3e-06
Identities = 97/381 (25%), Positives = 117/381 (30%), Gaps = 48/381 (12%)
Query: 9 SPSSEPEAGPSQPPVRQGA--LQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
SP + AG P G L+GG P G PG PP P A
Sbjct: 874 SPGPQGLAGSPGPHGPNGVPGLKGGRGT-QGPPGATGFPG--SAGRVGPPGPAGAPGPAG 930
Query: 67 KRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVV 126
P EGP L+ PG R VG GP GP G G
Sbjct: 931 PLGEPGKEGPPGLRGDPGSHGR----------VGDRGPAGPPGGPG-------------- 966
Query: 127 EQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPA-PPGQLHT 185
+ G PP P + P G+ + PGPA PG++
Sbjct: 967 -DKGDPGEDGQPGPDGPPGPAGTTGQRGIV----GMPGQRGERGMPGLPGPAGTPGKVGP 1021
Query: 186 LDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLL 245
G K P VG GS P PG + TP G G +
Sbjct: 1022 TGAT-------GDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPG 1074
Query: 246 PAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATP--FWSHLLPGPKEPVLDPTDC 303
PAG P P P G G S P LPGP+ P D D
Sbjct: 1075 PAG-LPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDH 1133
Query: 304 GPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAP 363
G G R + R + L+ L PG ++ +P P R G S G P
Sbjct: 1134 GDRGDRGQKGHR-GFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGP 1192
Query: 364 SGHI--EGFTAEIGASGSYCP 382
G I G +G +G P
Sbjct: 1193 LGPIGPPGVRGSVGEAGPEGP 1213
Score = 48.5 bits (114), Expect = 2e-05
Identities = 87/324 (26%), Positives = 105/324 (32%), Gaps = 43/324 (13%)
Query: 5 QAEPSPSSEPEAGPSQPPVRQGALQGGLLMGYSPA-----GGATSPGVYQVSIFSPPAGT 59
+ P PS P G + PP QG + G + +P GG G + G
Sbjct: 743 KGSPGPSGTP--GDTGPPGLQG-MPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGL 799
Query: 60 SEPHRALKRQAPSTE----GPRELKRGPGLGAREGLPPEEPST--VGLLGPEGPGLGLGV 113
P P+ E GPR L PG G E T VG GP+GP GV
Sbjct: 800 PGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGV 859
Query: 114 ASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGE 173
+ Q+ S G P P L PG G G
Sbjct: 860 KGEPGEPG------QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGS 913
Query: 174 SPGPAPPGQLHTLDTDLHSLAQIGGKSPVA---------GVGNGGSLWPRESPGTANGHS 224
+ PPG L + G + P VG+ G P PG G
Sbjct: 914 AGRVGPPGPAGA-PGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGD-KGDP 971
Query: 225 PEHTPPGP-GPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKAT 283
E PGP GPPGP T G+ V P R RG G P A + K
Sbjct: 972 GEDGQPGPDGPPGPAGT------TGQRGIVGM----PGQRGERGMPGLPGPA-GTPGKVG 1020
Query: 284 PFWSHLLPGPKEPVLDPTDCGPMG 307
P + GP PV P GP+G
Sbjct: 1021 PTGATGDKGPPGPVGPPGSNGPVG 1044
Score = 48.1 bits (113), Expect = 2e-05
Identities = 80/280 (28%), Positives = 100/280 (35%), Gaps = 44/280 (15%)
Query: 71 PSTEGPRELKRGP----GLGAREGLPPE-----EPSTVGLLGPEGPGLGLGVASQHFSHR 121
P +GP E K GP G R G P +P ++GL GP+G G + +
Sbjct: 578 PGVQGP-EGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEA-GNA 635
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G V QR + G P PP A R P PG G G P PPG
Sbjct: 636 G--VPGQRGAPGKDGEVGPSGPVGPPGLAG-----ERGEQGP-PGPTGFQGLPGPPGPPG 687
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT---------ANGHSPEHTPPGP 232
+ D G P+ G G+ R PG A GH P+ GP
Sbjct: 688 E-GGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPD----GP 742
Query: 233 -GPPGPCPTKRRLLPAG--EAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHL 289
G PGP T P G P P P+ RG +G A ++ +
Sbjct: 743 KGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDG----ARG 798
Query: 290 LPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPG 329
LPGP P P GP G + + R + P S R PG
Sbjct: 799 LPGPLGP---PGPAGPTGEKGEPGPRGLVGPPGS-RGNPG 834
Score = 47.0 bits (110), Expect = 4e-05
Identities = 104/417 (24%), Positives = 133/417 (31%), Gaps = 80/417 (19%)
Query: 4 VQAEPSPSSEP-------EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVY-QVSIFSP 55
++ P P+ P E GP P +G P G PGV Q P
Sbjct: 127 IRGRPGPAGPPGSQGPRGERGPKGRPGPRG-----------PQGIDGEPGVPGQPGAPGP 175
Query: 56 PAGTSEPHR-ALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVA 114
P S P L R P + L GLG++ GL P +VG +GP GP G+
Sbjct: 176 PGHPSHPGPDGLSR--PFSAQMAGLDEKSGLGSQVGL---MPGSVGPVGPRGP---QGLQ 227
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
Q + G+ P PP + R+ + G GS G
Sbjct: 228 GQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGAR 287
Query: 175 PGPAPPG-----------QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGT---- 219
P PG L ++ + G P +G G L PR PG
Sbjct: 288 GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRL 347
Query: 220 ----ANGHSPEHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPA-PRRRRGSLGHPT 273
A G H PG PGP GP +P + +G A P RG G P
Sbjct: 348 GPQGAPGQRGAHGMPGKPGPMGPLG-----IPGSSGFPGNPGMKGEAGPTGARGPEG-PQ 401
Query: 274 AANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSP 333
P S LPG P GP G PG P
Sbjct: 402 GQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTG-------------------SPGTSGP 442
Query: 334 P-SASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPV 389
P SA P +P G+ +RG+ G + GF E G G P + P+
Sbjct: 443 PGSAGPPGSPGPQ----GSTGPQGIRGQPGDPG-VPGFKGEAGPKGEPGPHGIQGPI 494
Score = 45.4 bits (106), Expect = 1e-04
Identities = 108/399 (27%), Positives = 127/399 (31%), Gaps = 54/399 (13%)
Query: 17 GPSQPPVRQGAL-QGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEG 75
GP PP + G + G G A SPG P P R EG
Sbjct: 255 GPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGF-----PGAPGLPGLKGHRGHKGLEG 309
Query: 76 PRELKRGPGLGAREGLPPEEPSTVGLLGPEG-PG----LG-LGVASQHFSHRGLCVVEQR 129
P+ PG G P +G LGP G PG LG G Q +H
Sbjct: 310 PKGEVGAPGSKGEAG-PTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPM 368
Query: 130 SSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP---PGQLHTL 186
+ +SG P N A G QG GE+ P P PG +
Sbjct: 369 GPLGIPGSSGF------PGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAI 422
Query: 187 DTDLHSLAQIGGKSPVAGVGNGG---SLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRR 243
TD G K P G G S P SPG P+ PG PG K
Sbjct: 423 GTD----GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGE 478
Query: 244 LLPAGE-------APDVSSEEEGP-APRRRRGSLGHPTAANSSDAKATPFW--SHLLPGP 293
P GE P EEG PR G++G P A + S LPGP
Sbjct: 479 AGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGP 538
Query: 294 KEPVLDPTDCGPMGRR-------------LKGARRLKLSPLRSLRKGP-GLLSPPSASPV 339
K + G G + L GAR L +P +G G L P
Sbjct: 539 KGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGR 598
Query: 340 PTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
P P S + G L G SG G E G +G
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGD-PGKPGEAGNAG 636
Score = 42.4 bits (98), Expect = 0.001
Identities = 90/364 (24%), Positives = 119/364 (32%), Gaps = 90/364 (24%)
Query: 10 PSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVY-QVSIFSPPAGTSEPHRALKR 68
P EAG + P ++GA +G P+G PG+ + PP T +
Sbjct: 626 PGKPGEAGNAGVPGQRGAPGKDGEVG--PSGPVGPPGLAGERGEQGPPGPTGF------Q 677
Query: 69 QAPSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVV 126
P GP PG G + G P +P VG LGP G
Sbjct: 678 GLPGPPGP------PGEGGKPGDQGVPGDPGAVGPLGPRG-------------------- 711
Query: 127 EQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTL 186
+R + G P A H D PG G+ G++ PPG
Sbjct: 712 -ERGNPGERGEPGITGLPGEKGMAGG---HGPDGPKGSPGPSGTPGDT---GPPG----- 759
Query: 187 DTDLHSLAQIGGKSPVAGV----GNGGSLWPRESPGTANGHSPEHTPPGPGPPGPC---- 238
L + G+ +AG G+ G + + + GTA P GPPGP
Sbjct: 760 ------LQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG 813
Query: 239 ----PTKRRLL--PAGEAPDVSSEEEGP----------APRRRRGSLGHP-TAANSSDAK 281
P R L+ P S E GP P + G G P DA
Sbjct: 814 EKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAG 873
Query: 282 ATPFWSHLLPGPKEPVLDPTDCGPMG-RRLKGARRLKLSP-LRSLRKGPGLLSPPSASPV 339
+ PGP+ P GP G LKG R + P G + PP +
Sbjct: 874 S--------PGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGA 925
Query: 340 PTPA 343
P PA
Sbjct: 926 PGPA 929
Score = 41.6 bits (96), Expect = 0.002
Identities = 66/233 (28%), Positives = 77/233 (33%), Gaps = 58/233 (24%)
Query: 10 PSSEPEAGPSQPPVRQGAL-QGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKR 68
P E AG P R GA+ + G PAG S G P P A +R
Sbjct: 1046 PGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAP-----GTPGPVGAPGDAGQR 1100
Query: 69 QAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
P + GP PG + GLP GP+GP G H RG
Sbjct: 1101 GDPGSRGPIG---PPGRAGKRGLP----------GPQGPR---GDKGDH-GDRG-----D 1138
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGP----APPGQLH 184
R +G P PP G QGS G PGP PPG +
Sbjct: 1139 RGQKGHRGFTGLQGLPGPPG---------------PNGEQGSAG-IPGPFGPRGPPGPVG 1182
Query: 185 TLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGP 237
+ G P+ +G G R S G A P P PGPPGP
Sbjct: 1183 PSGKE-------GNPGPLGPIGPPGV---RGSVGEAGPEGPPGEPGPPGPPGP 1225
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 50.8 bits (120), Expect = 3e-06
Identities = 70/256 (27%), Positives = 88/256 (34%), Gaps = 45/256 (17%)
Query: 34 MGYS----PAGGATSPGVYQVSIFSPPAG-------TSEPHRALKRQAPSTEGPRELKRG 82
MGY+ P G SPG+ S P G T P +A +R +G R +
Sbjct: 406 MGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGD 465
Query: 83 PGL-GAR-----EGLPPE-----EPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSS 131
PG+ G R GLP E + GL GP G G + + R
Sbjct: 466 PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGE---------IGPRGL 516
Query: 132 VTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLH 191
S G P PP + D G +GSLG P PPGQ T T
Sbjct: 517 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ---GPKGSLGPQGEPGPPGQQGTPGTQ-- 571
Query: 192 SLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAP 251
G P +G G P+ PG + P PG GP TK P+G
Sbjct: 572 -----GLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG 626
Query: 252 DVSSEEEGPAPRRRRG 267
+ P PR +G
Sbjct: 627 PLGY----PGPRGVKG 638
Score = 47.8 bits (112), Expect = 3e-05
Identities = 102/426 (23%), Positives = 137/426 (32%), Gaps = 73/426 (17%)
Query: 15 EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTE 74
E GP+ P ++G G G P PP P P +
Sbjct: 753 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGP-------HGPPGERGLPGPQGPNGFPGPK 805
Query: 75 GPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSV 132
GP PG ++GLP P + VG G GP GV + + +R
Sbjct: 806 GP------PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER--- 856
Query: 133 TSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP----PGQLHTLDT 188
G PP PP ++ DPG G+ G+ GPA PG+ L
Sbjct: 857 ------GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD-GPAGLRGFPGE-RGLPG 908
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAG 248
G + P G GS R + G+ P P GPPG K +P
Sbjct: 909 TAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGE 966
Query: 249 EAPDVSSEEEG-------PAPR---------RRRGSLGHPTAANSSDAKATPFWSHLLPG 292
+ P + +G P P +G +G P + K H PG
Sbjct: 967 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----EHGPPG 1022
Query: 293 PKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNF 352
P P+ GP+G+ GA PG P +R G
Sbjct: 1023 PPGPI------GPVGQ--PGA--------AGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1066
Query: 353 EESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLN 412
L+G PSG +G T ++G G P P D Q P G+ +L
Sbjct: 1067 GPIGLQGLPGPSGE-KGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPG---GVGNLG 1121
Query: 413 PLGRKG 418
P G KG
Sbjct: 1122 PPGEKG 1127
Score = 40.4 bits (93), Expect = 0.004
Identities = 82/312 (26%), Positives = 102/312 (32%), Gaps = 60/312 (19%)
Query: 15 EAGPSQPPVRQGALQG--GLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPS 72
E GP P R G +QG GL P G A G P + P
Sbjct: 966 EKGPIGPTGRDG-VQGPVGLPGPAGPPGVAGEDG--DKGEVGDPGQKGTKGNKGEHGPPG 1022
Query: 73 TEGPRELKRGPGLGAREGLP----PE-------EPSTVGLLGPEGPGLGLGVASQHFSHR 121
GP PG +G P P+ + T G GP GP +GL +
Sbjct: 1023 PPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGP-IGLQGLPGPSGEK 1081
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + G PP PP + D PGG G+LG PPG
Sbjct: 1082 G-----------ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLG------PPG 1124
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGT--ANGHSPEHTPPGP-GPPGP 237
+ G+S G+ G G PR G +G E PPGP GP G
Sbjct: 1125 EKGE-----------PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD 1173
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
K P G D EG PR + G+ G D + PG P
Sbjct: 1174 DGPKGNPGPVGFPGDPGPPGEG-GPRGQDGAKGD----RGEDGEPGQ------PGSPGPT 1222
Query: 298 LDPTDCGPMGRR 309
+ GP+G+R
Sbjct: 1223 GENGPPGPLGKR 1234
Score = 37.7 bits (86), Expect = 0.027
Identities = 59/227 (25%), Positives = 75/227 (33%), Gaps = 35/227 (15%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR---GLCV 125
P GPR G +G P P P G GP GP G A S G
Sbjct: 1192 PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA 1251
Query: 126 VEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGPAPPGQL 183
++ + +G P P + L + G G+ G++ PGP P L
Sbjct: 1252 KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1311
Query: 184 HTLDTDLHSLAQ---------IGGKSPVAGVGNGGSLWPRESPGT--------ANGHSPE 226
L D + + IG G+ G P+ SPG A+G
Sbjct: 1312 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1371
Query: 227 HTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP 272
PPG PGP GP K P G P +GP GHP
Sbjct: 1372 GGPPGLPGPAGPKGAKGATGPGG--PKGEKGVQGPP--------GHP 1408
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 50.8 bits (120), Expect = 3e-06
Identities = 70/256 (27%), Positives = 88/256 (34%), Gaps = 45/256 (17%)
Query: 34 MGYS----PAGGATSPGVYQVSIFSPPAG-------TSEPHRALKRQAPSTEGPRELKRG 82
MGY+ P G SPG+ S P G T P +A +R +G R +
Sbjct: 385 MGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGD 444
Query: 83 PGL-GAR-----EGLPPE-----EPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSS 131
PG+ G R GLP E + GL GP G G + + R
Sbjct: 445 PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGE---------IGPRGL 495
Query: 132 VTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLH 191
S G P PP + D G +GSLG P PPGQ T T
Sbjct: 496 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ---GPKGSLGPQGEPGPPGQQGTPGTQ-- 550
Query: 192 SLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAP 251
G P +G G P+ PG + P PG GP TK P+G
Sbjct: 551 -----GLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG 605
Query: 252 DVSSEEEGPAPRRRRG 267
+ P PR +G
Sbjct: 606 PLGY----PGPRGVKG 617
Score = 47.8 bits (112), Expect = 3e-05
Identities = 102/426 (23%), Positives = 137/426 (32%), Gaps = 73/426 (17%)
Query: 15 EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTE 74
E GP+ P ++G G G P PP P P +
Sbjct: 732 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGP-------HGPPGERGLPGPQGPNGFPGPK 784
Query: 75 GPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSV 132
GP PG ++GLP P + VG G GP GV + + +R
Sbjct: 785 GP------PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER--- 835
Query: 133 TSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP----PGQLHTLDT 188
G PP PP ++ DPG G+ G+ GPA PG+ L
Sbjct: 836 ------GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD-GPAGLRGFPGE-RGLPG 887
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAG 248
G + P G GS R + G+ P P GPPG K +P
Sbjct: 888 TAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGE 945
Query: 249 EAPDVSSEEEG-------PAPR---------RRRGSLGHPTAANSSDAKATPFWSHLLPG 292
+ P + +G P P +G +G P + K H PG
Sbjct: 946 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----EHGPPG 1001
Query: 293 PKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNF 352
P P+ GP+G+ GA PG P +R G
Sbjct: 1002 PPGPI------GPVGQ--PGA--------AGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1045
Query: 353 EESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLN 412
L+G PSG +G T ++G G P P D Q P G+ +L
Sbjct: 1046 GPIGLQGLPGPSGE-KGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPG---GVGNLG 1100
Query: 413 PLGRKG 418
P G KG
Sbjct: 1101 PPGEKG 1106
Score = 40.4 bits (93), Expect = 0.004
Identities = 82/312 (26%), Positives = 102/312 (32%), Gaps = 60/312 (19%)
Query: 15 EAGPSQPPVRQGALQG--GLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPS 72
E GP P R G +QG GL P G A G P + P
Sbjct: 945 EKGPIGPTGRDG-VQGPVGLPGPAGPPGVAGEDG--DKGEVGDPGQKGTKGNKGEHGPPG 1001
Query: 73 TEGPRELKRGPGLGAREGLP----PE-------EPSTVGLLGPEGPGLGLGVASQHFSHR 121
GP PG +G P P+ + T G GP GP +GL +
Sbjct: 1002 PPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGP-IGLQGLPGPSGEK 1060
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + G PP PP + D PGG G+LG PPG
Sbjct: 1061 G-----------ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLG------PPG 1103
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGT--ANGHSPEHTPPGP-GPPGP 237
+ G+S G+ G G PR G +G E PPGP GP G
Sbjct: 1104 EKGE-----------PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD 1152
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
K P G D EG PR + G+ G D + PG P
Sbjct: 1153 DGPKGNPGPVGFPGDPGPPGEG-GPRGQDGAKGD----RGEDGEPGQ------PGSPGPT 1201
Query: 298 LDPTDCGPMGRR 309
+ GP+G+R
Sbjct: 1202 GENGPPGPLGKR 1213
Score = 37.7 bits (86), Expect = 0.027
Identities = 59/227 (25%), Positives = 75/227 (33%), Gaps = 35/227 (15%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR---GLCV 125
P GPR G +G P P P G GP GP G A S G
Sbjct: 1171 PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA 1230
Query: 126 VEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGPAPPGQL 183
++ + +G P P + L + G G+ G++ PGP P L
Sbjct: 1231 KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1290
Query: 184 HTLDTDLHSLAQ---------IGGKSPVAGVGNGGSLWPRESPGT--------ANGHSPE 226
L D + + IG G+ G P+ SPG A+G
Sbjct: 1291 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1350
Query: 227 HTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP 272
PPG PGP GP K P G P +GP GHP
Sbjct: 1351 GGPPGLPGPAGPKGAKGATGPGG--PKGEKGVQGPP--------GHP 1387
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 50.8 bits (120), Expect = 3e-06
Identities = 70/256 (27%), Positives = 88/256 (34%), Gaps = 45/256 (17%)
Query: 34 MGYS----PAGGATSPGVYQVSIFSPPAG-------TSEPHRALKRQAPSTEGPRELKRG 82
MGY+ P G SPG+ S P G T P +A +R +G R +
Sbjct: 492 MGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGD 551
Query: 83 PGL-GAR-----EGLPPE-----EPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSS 131
PG+ G R GLP E + GL GP G G + + R
Sbjct: 552 PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGE---------IGPRGL 602
Query: 132 VTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLH 191
S G P PP + D G +GSLG P PPGQ T T
Sbjct: 603 PGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ---GPKGSLGPQGEPGPPGQQGTPGTQ-- 657
Query: 192 SLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAP 251
G P +G G P+ PG + P PG GP TK P+G
Sbjct: 658 -----GLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG 712
Query: 252 DVSSEEEGPAPRRRRG 267
+ P PR +G
Sbjct: 713 PLGY----PGPRGVKG 724
Score = 47.8 bits (112), Expect = 3e-05
Identities = 102/426 (23%), Positives = 137/426 (32%), Gaps = 73/426 (17%)
Query: 15 EAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTE 74
E GP+ P ++G G G P PP P P +
Sbjct: 839 ERGPTGPRGQRGPRGATGKSGAKGTSGGDGP-------HGPPGERGLPGPQGPNGFPGPK 891
Query: 75 GPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSV 132
GP PG ++GLP P + VG G GP GV + + +R
Sbjct: 892 GP------PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGER--- 942
Query: 133 TSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAP----PGQLHTLDT 188
G PP PP ++ DPG G+ G+ GPA PG+ L
Sbjct: 943 ------GHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKD-GPAGLRGFPGE-RGLPG 994
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAG 248
G + P G GS R + G+ P P GPPG K +P
Sbjct: 995 TAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG--VPGE 1052
Query: 249 EAPDVSSEEEG-------PAPR---------RRRGSLGHPTAANSSDAKATPFWSHLLPG 292
+ P + +G P P +G +G P + K H PG
Sbjct: 1053 KGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKG----EHGPPG 1108
Query: 293 PKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNF 352
P P+ GP+G+ GA PG P +R G
Sbjct: 1109 PPGPI------GPVGQ--PGA--------AGADGEPGARGPQGHFGAKGDEGTRGFNGPP 1152
Query: 353 EESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGIVDLN 412
L+G PSG +G T ++G G P P D Q P G+ +L
Sbjct: 1153 GPIGLQGLPGPSGE-KGETGDVGPMGPPGPPGPRGPAGPNGAD-GPQGPPG---GVGNLG 1207
Query: 413 PLGRKG 418
P G KG
Sbjct: 1208 PPGEKG 1213
Score = 40.4 bits (93), Expect = 0.004
Identities = 82/312 (26%), Positives = 102/312 (32%), Gaps = 60/312 (19%)
Query: 15 EAGPSQPPVRQGALQG--GLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPS 72
E GP P R G +QG GL P G A G P + P
Sbjct: 1052 EKGPIGPTGRDG-VQGPVGLPGPAGPPGVAGEDG--DKGEVGDPGQKGTKGNKGEHGPPG 1108
Query: 73 TEGPRELKRGPGLGAREGLP----PE-------EPSTVGLLGPEGPGLGLGVASQHFSHR 121
GP PG +G P P+ + T G GP GP +GL +
Sbjct: 1109 PPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGP-IGLQGLPGPSGEK 1167
Query: 122 GLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPG 181
G + G PP PP + D PGG G+LG PPG
Sbjct: 1168 G-----------ETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLG------PPG 1210
Query: 182 QLHTLDTDLHSLAQIGGKSPVAGV-GNGGSLWPRESPGT--ANGHSPEHTPPGP-GPPGP 237
+ G+S G+ G G PR G +G E PPGP GP G
Sbjct: 1211 EKGE-----------PGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGD 1259
Query: 238 CPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPV 297
K P G D EG PR + G+ G D + PG P
Sbjct: 1260 DGPKGNPGPVGFPGDPGPPGEG-GPRGQDGAKGD----RGEDGEPGQ------PGSPGPT 1308
Query: 298 LDPTDCGPMGRR 309
+ GP+G+R
Sbjct: 1309 GENGPPGPLGKR 1320
Score = 37.7 bits (86), Expect = 0.027
Identities = 59/227 (25%), Positives = 75/227 (33%), Gaps = 35/227 (15%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHR---GLCV 125
P GPR G +G P P P G GP GP G A S G
Sbjct: 1278 PGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA 1337
Query: 126 VEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--PGPAPPGQL 183
++ + +G P P + L + G G+ G++ PGP P L
Sbjct: 1338 KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGL 1397
Query: 184 HTLDTDLHSLAQ---------IGGKSPVAGVGNGGSLWPRESPGT--------ANGHSPE 226
L D + + IG G+ G P+ SPG A+G
Sbjct: 1398 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGP 1457
Query: 227 HTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHP 272
PPG PGP GP K P G P +GP GHP
Sbjct: 1458 GGPPGLPGPAGPKGAKGATGPGG--PKGEKGVQGPP--------GHP 1494
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 50.4 bits (119), Expect = 4e-06
Identities = 102/410 (24%), Positives = 136/410 (33%), Gaps = 65/410 (15%)
Query: 10 PSSEPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQV--SIFSPPA-GTSEPHRAL 66
P + + GP PP +G QG P G PG+ + ++ P A G P
Sbjct: 694 PGVKGDKGPMGPPGPKGD-QGEK----GPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPD 748
Query: 67 KRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGL-------GVASQHFS 119
Q P G + L PG+ G P +P GL GP+GP GL G+ + +
Sbjct: 749 GHQGP--RGEQGLTGMPGIRGPPG-PSGDPGKPGLTGPQGPQ-GLPGTPGRPGIKGEPGA 804
Query: 120 HRGLCVVEQRSSVT---SSWTSGAWSPPCPPSNASCNTLHTRDWASPD--PGGQGSLGES 174
+ E S +T GA PP PP A P PG Q L
Sbjct: 805 PGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGP--------AGPAGLPGHQEVLNLQ 856
Query: 175 PGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGP 234
P PPG I G G G P PG+ +S PGP
Sbjct: 857 GPPGPPGPRGPPGPS------IPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGP 910
Query: 235 PGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLL---- 290
PGP P ++ P PR +G G P + S ++ F +L
Sbjct: 911 PGP-------------PGPKGDQGPPGPRGHQGEQGLPGFSTSG---SSSFGLNLQGPPG 954
Query: 291 -PGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLL 349
PGP+ P D D G + GA + P +S P P P
Sbjct: 955 PPGPQGPKGDKGDPG-----VPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISS 1009
Query: 350 GNFEESLLRGRFAPSGHIEGFTAEI-GASGSYCPQHVTLPVTVTFFDVSE 398
E + S I + + + G G P +T FD SE
Sbjct: 1010 SGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSE 1059
Score = 40.0 bits (92), Expect = 0.005
Identities = 63/245 (25%), Positives = 73/245 (29%), Gaps = 79/245 (32%)
Query: 8 PSPSSEPEA-GPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRAL 66
P P P A GP PP G PAG A PG +V P G P
Sbjct: 820 PGPPGPPGAMGPPGPPGAPG-----------PAGPAGLPGHQEVLNLQGPPGPPGPRGPP 868
Query: 67 KRQAPSTEGPRELKRGPGLGAREGLP--------------PEEPSTVGLLGPEGPGLGLG 112
P GPR G GL G P P P G G +GP G
Sbjct: 869 GPSIPGPPGPRG-PPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRG 927
Query: 113 VASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLG 172
H +GL +S +SS+ PP PP G QG G
Sbjct: 928 ----HQGEQGLPGFS--TSGSSSFGLNLQGPPGPP------------------GPQGPKG 963
Query: 173 ESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGP 232
+ P PG L G+ +G P S + P
Sbjct: 964 DKGDPGVPGAL--------------------GIPSG--------PSEGGSSSTMYVSGPP 995
Query: 233 GPPGP 237
GPPGP
Sbjct: 996 GPPGP 1000
Score = 37.4 bits (85), Expect = 0.035
Identities = 92/360 (25%), Positives = 116/360 (32%), Gaps = 47/360 (13%)
Query: 33 LMGYSPAGGAT-------SPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGL 85
L G +PA GA S ++ +F E R +P GP+ PG
Sbjct: 524 LQGMAPAAGADLDKIGLHSDSQEELWMFVRKKLMMEQENGNLRGSP---GPKGDMGSPGP 580
Query: 86 GAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSP 143
G P P P +G GP+GP G + QR G P
Sbjct: 581 KGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPM---GQRGREGPMGPRGEAGP 637
Query: 144 PCPPSNASCNTLHTRDWASPDPGGQGSLGE-----SPGP-APPGQ--LHTLDTDLHSLAQ 195
P P PG GS+G SPGP PPG L L ++
Sbjct: 638 PGSGEKGERGAAGEPGPHGP-PGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGV 696
Query: 196 IGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSS 255
G K P+ G G + G P G PG K + PAG PD
Sbjct: 697 KGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPG---AKGAMGPAG--PDGHQ 751
Query: 256 EEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGAR- 314
PR +G G P P L GP+ P P G G +KG
Sbjct: 752 -----GPRGEQGLTGMPGIRGPPGPSGDP-GKPGLTGPQGPQGLPGTPGRPG--IKGEPG 803
Query: 315 ---RLKLSPLRSLRK------GPGLLSPPSASPVPTPAVSRTLLGNFEESLLRGRFAPSG 365
++ S S+ PG + PP P PA L G+ E L+G P G
Sbjct: 804 APGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPG 863
Score = 35.0 bits (79), Expect = 0.17
Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 42/203 (20%)
Query: 197 GGKSPVAGVGNGGSLWPRESPGTAN-----GHSPEHTPPG-------PGPPGPCPTKRR- 243
G P +G+ G R PGT GH P G PG GP + R
Sbjct: 567 GSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGRE 626
Query: 244 --LLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKAT--PFWSHLLPGPKEPVLD 299
+ P GEA S E+G RG+ G P + P S PGP+ P
Sbjct: 627 GPMGPRGEAGPPGSGEKG-----ERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPP-- 679
Query: 300 PTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRG 359
GP+G L+G R P KGP + PP R L G E +RG
Sbjct: 680 ----GPVG--LQGLRGEVGLPGVKGDKGP--MGPPGPKGDQGEKGPRGLTG---EPGMRG 728
Query: 360 RFAPSGHIEGFTAEIGASGSYCP 382
+ G E GA G+ P
Sbjct: 729 -------LPGAVGEPGAKGAMGP 744
Score = 31.6 bits (70), Expect = 1.9
Identities = 53/220 (24%), Positives = 78/220 (35%), Gaps = 31/220 (14%)
Query: 185 TLDTDLHSLAQIGGKS----PVAGVGNGGSLWPRE----------SPGTANGHSPE---- 226
T+ T L SL GG S A +G G L + S G+ GH+
Sbjct: 22 TVTTRLTSLPPKGGTSNGYAKTASLGGGSRLEKQSLTHGSSGYINSTGSTRGHASTSSYR 81
Query: 227 --HTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATP 284
H+P P P T R S +P R + S + +
Sbjct: 82 RAHSPASTLPNSPGSTFERKTHVTRHAYEGSSSGNSSPEYPRKEFASSSTRGRSQTRESE 141
Query: 285 FWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAV 344
L P T+ + R LKG+R +SP R+ L P V T V
Sbjct: 142 IRVRLQSA--SPSTRWTELDDVKRLLKGSRSASVSPTRN---SSNTLPIPKKGTVETKIV 196
Query: 345 ---SRTLLGNFEESLLRGRFAPSGHIEGFTAEIGAS-GSY 380
S+++ G ++ ++L PS H+ T G+S G+Y
Sbjct: 197 TASSQSVSGTYDATILDANL-PS-HVWSSTLPAGSSMGTY 234
Score = 30.8 bits (68), Expect = 3.3
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 168 QGSLGESPGP-APPG------QLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTA 220
QG G+ PGP PPG + DL Q G A G G +PG
Sbjct: 1398 QGPPGQ-PGPQGPPGISKVFSAYSNVTADLMDFFQTYG----AIQGPPGQKGEMGTPGPK 1452
Query: 221 NGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSL 269
P P PGPPGP K GE D ++ A RRRR S+
Sbjct: 1453 GDRGPAGPPGHPGPPGPRGHK------GEKGD--KGDQVYAGRRRRRSI 1493
Score = 30.0 bits (66), Expect = 5.6
Identities = 55/203 (27%), Positives = 70/203 (34%), Gaps = 36/203 (17%)
Query: 101 LLGPEGPGLGLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWS-----PPCPPS--NASCN 153
L+GP GP G AS S L E S + S +S S PP PP S
Sbjct: 1104 LMGPRGPP-GPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYE 1162
Query: 154 TLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDT--DLHSLAQIGGKSPVAGV-GNGGS 210
L + S G G G P PG + + + DL S G S + G G G
Sbjct: 1163 ELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVEDLSSYLHTAGLSFIPGPPGPPGP 1222
Query: 211 LWPRESPGTANG---HSPEHT----------------------PPGPGPPGPCPTKRRLL 245
PR PG + ++ E++ PPGP P P RLL
Sbjct: 1223 PGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLL 1282
Query: 246 PAGEAPDVSSEEEGPAPRRRRGS 268
+ S + RRGS
Sbjct: 1283 STDASHSRGSSSSSHSSSVRRGS 1305
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 50.4 bits (119), Expect = 4e-06
Identities = 75/289 (25%), Positives = 95/289 (32%), Gaps = 40/289 (13%)
Query: 69 QAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
++PS P+ G G++ PS G G G G + Q G Q
Sbjct: 273 RSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSG-----GSGWG---SPQRNGGSG-----Q 319
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDT 188
RS A SPP PS+ S A+P P +G SP AP Q
Sbjct: 320 RSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGR---- 375
Query: 189 DLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHT-PPGPGPPGPCPTKRRLLPA 247
GG++ G G R ++ +P P P P + R L A
Sbjct: 376 --------GGRA-AGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRA 426
Query: 248 GEAPDVSSEE----EGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGP------KEPV 297
+ D S GP P RG GH A +A P + PG E
Sbjct: 427 RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGK 486
Query: 298 LDPTDCGPMGRRLKGARRLKLSPLRSLRKGPGLLSPPSASPVPTPAVSR 346
GP R +R S RS K P PS SP P +SR
Sbjct: 487 SSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP---HSPSRSPSPKKPLSR 532
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 50.1 bits (118), Expect = 5e-06
Identities = 100/412 (24%), Positives = 126/412 (30%), Gaps = 50/412 (12%)
Query: 3 HVQAEPSPSSEPEAGPSQPPVRQGAL----QGGLLMGYSPAGGATSPGVYQVS------- 51
HV P + E G PP G GLL G PGV +
Sbjct: 570 HVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKG 629
Query: 52 IFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGL 111
PP P + + GP+ L PG E PP P GL G +GP L
Sbjct: 630 NVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPG----EKGPPGNPGIPGLPGSDGP---L 682
Query: 112 GVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASP-------- 163
G H H G + S + P S N +
Sbjct: 683 G----HPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGF 738
Query: 164 --DPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTAN 221
D G +G G+ P P G+ + Q G + P G G L PG
Sbjct: 739 KGDVGLKGDQGKPGAPGPRGE-DGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPG 797
Query: 222 GHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLG-----HPTAAN 276
P+ + PGP GP K + G+ P + E P R RG G P
Sbjct: 798 RPGPKGSIGFPGPLGPIGEKGKSGKTGQ-PGLEGERGPPGSRGERGQPGATGQPGPKGDV 856
Query: 277 SSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKGARRLKLSPLRSLRKG----PGLLS 332
D LPG + P P GP G + K R P ++G G
Sbjct: 857 GQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGR-----PGHPGQRGELGFQGQTG 911
Query: 333 PPSASPVPTPAVSRTLLGNFEESLLRGRFAPSGH--IEGFTAEIGASGSYCP 382
PP + V P +G E G P G + G GA G P
Sbjct: 912 PPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGP 963
Score = 46.6 bits (109), Expect = 6e-05
Identities = 87/339 (25%), Positives = 112/339 (33%), Gaps = 56/339 (16%)
Query: 71 PSTEGPRELKRGPGLGAREGLP--PEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQ 128
P GP K PG ++G P P + +G G GP GV + + +
Sbjct: 877 PGFPGP---KGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGE 933
Query: 129 RSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES--------PGP-AP 179
R G PP PP L R+ A + G G LG+ PGP
Sbjct: 934 R---------GPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGG 984
Query: 180 PGQLHTLDTDLHSLAQIGGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCP 239
PG D G K P VG GS R G A G GP GP
Sbjct: 985 PG-------DPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAG 1037
Query: 240 TKRRLLPAGEAPDVSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLD 299
K G P + ++ P P G LG P AA S + PG K D
Sbjct: 1038 KKGSRGERG-PPGPTGKDGIPGP---LGPLGPPGAAGPSGEEGDK-GDVGAPGHKGSKGD 1092
Query: 300 PTDCGPMGR-------------RLKGARRLKLSPLRSLRKGP-------GLLSPPSASPV 339
D GP G+ GA+ + P +KG G++ PP +
Sbjct: 1093 KGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGL 1152
Query: 340 PTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASG 378
P P + +G+ G P G +G T G G
Sbjct: 1153 PGPPGEKGEVGDVGSMGPHGAPGPRGP-QGPTGSEGTPG 1190
Score = 42.0 bits (97), Expect = 0.001
Identities = 100/439 (22%), Positives = 135/439 (30%), Gaps = 92/439 (20%)
Query: 7 EPSPSS-EPEAGPSQPPVRQGALQGGLLMGYSPAGGATSPGVYQVSIFSPPAGTSEPHRA 65
+P P+ + + GP P G+ G PAGG PG PAG
Sbjct: 987 DPGPTGLKGDKGPPGPVGANGS--PGERGPLGPAGGIGLPGQSGSEGPVGPAG------- 1037
Query: 66 LKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCV 125
K+ + GP PG ++G+P G LGP GP G + + +
Sbjct: 1038 -KKGSRGERGP------PGPTGKDGIP-------GPLGPLGPPGAAGPSGEEGDKGDVGA 1083
Query: 126 VEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES----------- 174
+ S +G P A D A G G G+
Sbjct: 1084 PGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGV 1143
Query: 175 ---PG----PAPPGQLHTLDTDLHSLAQIGGKSP---------------VAGVGNGGSLW 212
PG P PPG+ + D+ S+ G P GVG G++
Sbjct: 1144 IGPPGLQGLPGPPGEKGEVG-DVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVG 1202
Query: 213 PRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEA--------PDVSSEEEGPAPRR 264
+ G A P P PGP G K P+G A P + P
Sbjct: 1203 EKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTG 1262
Query: 265 RRGSLGHPTAANSSDAKATPFWSHLL-----PGPKEPVLDPTDCGPMGRR---------- 309
G LG P S +P PGP +P GP G+R
Sbjct: 1263 LPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREG 1322
Query: 310 LKGARRLKLSP----------LRSLRKGPGLLSPPSASPVPTPAVSRTLLGNFEESLLRG 359
+G + K P R PG + P +P P LLG + G
Sbjct: 1323 REGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPG 1382
Query: 360 RFAPSGHIEGFTAEIGASG 378
PSG + G + G G
Sbjct: 1383 PLGPSG-LPGLKGDTGPKG 1400
Score = 40.8 bits (94), Expect = 0.003
Identities = 89/339 (26%), Positives = 111/339 (32%), Gaps = 85/339 (25%)
Query: 15 EAGPSQPPVRQGALQGGLLMGY----SPAGGATSPGVYQVSIFSPPAGTSEPHRALKRQA 70
E GP +G L L GY P G PG P E ++ K
Sbjct: 774 EEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPG--------PLGPIGEKGKSGKTGQ 825
Query: 71 PSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVASQHFSHRGLCVVEQRS 130
P EG R PG G +P G GP+G +G A +GL
Sbjct: 826 PGLEGERG---PPGSRGERG----QPGATGQPGPKGD-VGQDGAPGIPGEKGL------- 870
Query: 131 SVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDT-- 188
G PP P +D PG +G LG PPG L
Sbjct: 871 -------PGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQG 923
Query: 189 ---DLHSLAQIG--------GKSPVAGV----GNGGSLWP-----RESPGTANGH-SPEH 227
++ L + G G+ + G+ G G L P +E P G P+
Sbjct: 924 KTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKG 983
Query: 228 TP--PGP-------GPPGP-----CPTKRRLL-PAG--EAPDVSSEEEGPAPRRRRGSLG 270
P PGP GPPGP P +R L PAG P S E P ++GS G
Sbjct: 984 GPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043
Query: 271 H--PTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMG 307
P D +PGP P+ P GP G
Sbjct: 1044 ERGPPGPTGKDG---------IPGPLGPLGPPGAAGPSG 1073
Score = 40.8 bits (94), Expect = 0.003
Identities = 78/320 (24%), Positives = 98/320 (30%), Gaps = 38/320 (11%)
Query: 38 PAGGATSPGVYQVSIFSPPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPE--E 95
P+G A PG PP P GP PG+ +G P E +
Sbjct: 1236 PSGAAGPPGKK-----GPPGEDGAKGSVGPTGLPGDLGP---PGDPGVSGIDGSPGEKGD 1287
Query: 96 PSTVGLLGPEG----PGL----GLGVASQHFSHRGLCVVEQRSSVTSSWTSGAWSPPC-- 145
P VG GP G PG G S H G + + G PP
Sbjct: 1288 PGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREG-----REGEKGAKGEPGPDGPPGRT 1342
Query: 146 -------PPSNASCNTLHTRDWASPDPGGQGSLGES--PGPAPPGQLHTLDTDLHSLAQI 196
PP L +PG G+ G+ PGP P L L D +
Sbjct: 1343 GPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEK 1402
Query: 197 GGKSPVAGVGNGGSLWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEAPDVSSE 256
G + +G G + G P PGPPGP + P G A + +
Sbjct: 1403 GHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQK 1462
Query: 257 EEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKE--PVLDPTDCGPMGRRLKGAR 314
+P G G A P H L + PV P G + L
Sbjct: 1463 GSKGSP-GSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLPVVEGGLEEVLASLT 1521
Query: 315 RLKLSPLRSLRKGPGLLSPP 334
L L L LR+ PG P
Sbjct: 1522 SLSLE-LEQLRRPPGTAERP 1540
Score = 34.7 bits (78), Expect = 0.23
Identities = 73/282 (25%), Positives = 93/282 (32%), Gaps = 72/282 (25%)
Query: 55 PPAGTSEPHRALKRQAPSTEGPRELKRGPGLGAREGLPPEEPSTVGLLGPEGPGLGLGVA 114
P + +A + P + G + PGL G P + S +G GP GP +G
Sbjct: 762 PEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGS-IGFPGPLGP-IGEKGK 819
Query: 115 SQHFSHRGLCVVEQRSSVTSSWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGES 174
S GL G PP + A+ PG +G +G+
Sbjct: 820 SGKTGQPGL--------------EGERGPPGSRGERG------QPGATGQPGPKGDVGQD 859
Query: 175 --------------------PGP-APPGQLHTLDTDLH--SLAQIGGKSPVAGVGNGGSL 211
PGP PPG H ++G + G G L
Sbjct: 860 GAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVL 919
Query: 212 WPRESPGTANGHSPEHTPPG-PGPPGPCPTKRRLLPAGEAPDVSSEEEGPAPRRRRGSLG 270
P+ G G E PPG PGPPG + LP E + + E GP G LG
Sbjct: 920 GPQGKTGEV-GPLGERGPPGPPGPPG-----EQGLPGLEGREGAKGELGPP-----GPLG 968
Query: 271 HPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKG 312
K P PGPK P D GP G LKG
Sbjct: 969 ----------KEGPAGLRGFPGPKG---GPGDPGPTG--LKG 995
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,355,697
Number of Sequences: 37866
Number of extensions: 2099191
Number of successful extensions: 13211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 969
Number of HSP's that attempted gapping in prelim test: 8783
Number of HSP's gapped (non-prelim): 3451
length of query: 538
length of database: 18,247,518
effective HSP length: 107
effective length of query: 431
effective length of database: 14,195,856
effective search space: 6118413936
effective search space used: 6118413936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.