Search of human proteins with 32698790

Search of human proteins with 32698790

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32698790 STRA8 [Homo sapiens]
         (330 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32698790 STRA8 [Homo sapiens]                                      658   0.0  
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]           32   0.60 
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]           32   0.60 
gi|83367077 mucin 16 [Homo sapiens]                                    32   0.78 
gi|71061468 centromere protein E [Homo sapiens]                        32   0.78 
gi|18426913 drebrin 1 isoform b [Homo sapiens]                         32   0.78 
gi|18426915 drebrin 1 isoform a [Homo sapiens]                         32   0.78 
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    32   1.0  
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             31   1.7  
gi|24497609 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497607 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497605 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|24497603 nucleoporin 62kDa [Homo sapiens]                           31   1.7  
gi|26051235 nucleoporin 133kDa [Homo sapiens]                          30   2.3  
gi|118918423 hypothetical protein LOC286207 [Homo sapiens]             30   2.3  
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [...    30   3.0  
gi|16507200 ubiquitin specific protease 28 [Homo sapiens]              30   3.0  
gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]          30   3.9  
gi|46852174 kinesin family member 3A [Homo sapiens]                    29   5.1  
gi|10864047 epidermal growth factor receptor pathway substrate 1...    29   5.1  
gi|144922725 general transcription factor IIE, polypeptide 1, al...    29   6.6  
gi|91982772 mucin 17 [Homo sapiens]                                    29   6.6  
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]         28   8.6  

>gi|32698790 STRA8 [Homo sapiens]
          Length = 330

 Score =  658 bits (1697), Expect = 0.0
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR 60
           MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
Sbjct: 1   MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR 60

Query: 61  HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH 120
           HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
Sbjct: 61  HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH 120

Query: 121 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA 180
           ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA
Sbjct: 121 ASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAA 180

Query: 181 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS 240
           ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS
Sbjct: 181 ISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS 240

Query: 241 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA 300
           TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA
Sbjct: 241 TPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCA 300

Query: 301 NTQVKQEASFPVDEEMIMLQCTETFDDEDL 330
           NTQVKQEASFPVDEEMIMLQCTETFDDEDL
Sbjct: 301 NTQVKQEASFPVDEEMIMLQCTETFDDEDL 330


>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
          Length = 377

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 200 WAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS------TPEEILFEDAFDV 253
           W  ++  PA L E CR PA   G   D  +   G+ C   +       P  +   DA  +
Sbjct: 3   WKHENAAPA-LPEGCRLPA-EGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 60

Query: 254 ASFLDKSEVPSTSSSSSVLASCNP 277
           A  LDK E  ++  + S  + C+P
Sbjct: 61  AGALDKDEGQASPCTPSTPSVCSP 84


>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
          Length = 392

 Score = 32.3 bits (72), Expect = 0.60
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 200 WAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVS------TPEEILFEDAFDV 253
           W  ++  PA L E CR PA   G   D  +   G+ C   +       P  +   DA  +
Sbjct: 3   WKHENAAPA-LPEGCRLPA-EGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEAL 60

Query: 254 ASFLDKSEVPSTSSSSSVLASCNP 277
           A  LDK E  ++  + S  + C+P
Sbjct: 61  AGALDKDEGQASPCTPSTPSVCSP 84


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 20/288 (6%)

Query: 26   PEENSNPHDRATPQLPAQLQELEHRVARRR---LSQARHRA-TLAALFNNLRKTVYS-QS 80
            P+  S   ++ + QLP        +V R     L    H A T  A F    +T  + ++
Sbjct: 3803 PDPTSKKAEQTSTQLPTTTSAHPGQVPRSAATTLDVIPHTAKTPDATFQRQGQTALTTEA 3862

Query: 81   DLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKKEYASMYSGNDS 140
               +  W    K+    P + + ++++ +   +       +S L  +     ++ SG  S
Sbjct: 3863 RATSDSWNEKEKSTPSAPWITEMMNSVSE--DTIKEVTSSSSVLRTLNTLDINLESGTTS 3920

Query: 141  FPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAAISHLWQNLSEERKASLRQAW 200
             P   SSP+         + +  S   T +EA  P  +   +  W   SE    S   A 
Sbjct: 3921 SPSWKSSPY---------ERIAPSESTTDKEAIHPSTNTVETTGWVTSSEHASHSTIPA- 3970

Query: 201  AQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVSTPEEILFEDAFDVASFLDKS 260
               H   + L       +  E ++      +   S    + P   L  +  DV+ ++D S
Sbjct: 3971 ---HSASSKLTSPVVTTSTREQAIVSMSTTTWPESTRARTEPNSFLTIELRDVSPYMDTS 4027

Query: 261  EVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCANTQVKQEA 308
                TS  SS  ++   + P  +     +I + F   S  ++    EA
Sbjct: 4028 STTQTSIISSPGSTAITKGPRTEITSSKRISSSFLAQSMRSSDSPSEA 4075


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 17/86 (19%), Positives = 41/86 (47%)

Query: 46   ELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLD 105
            E++  +   R+    H+ T+  L   + +     SD+     +  ++ +  I EL++   
Sbjct: 1921 EIQQELKTARMLSKEHKETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKEL 1980

Query: 106  NLLKLKASFNLEDGHASSLEEVKKEY 131
             LL++K   N+     + +E++KK++
Sbjct: 1981 QLLRVKEDVNMSHKKINEMEQLKKQF 2006


>gi|18426913 drebrin 1 isoform b [Homo sapiens]
          Length = 651

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 189 SEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVSTPEEILFE 248
           SEE +A+  QAWA    GP       + P    GS  +  +  + A  ++++ P E    
Sbjct: 388 SEETRAAAPQAWA----GPMEEPPQAQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATA 443

Query: 249 DAFDVASFLDKSEVPSTSSSSSVLASCNP 277
           DA ++    D  E  + ++ ++V  +  P
Sbjct: 444 DATEIHDAADTIETDTATADTTVANNVPP 472


>gi|18426915 drebrin 1 isoform a [Homo sapiens]
          Length = 649

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 189 SEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVSTPEEILFE 248
           SEE +A+  QAWA    GP       + P    GS  +  +  + A  ++++ P E    
Sbjct: 386 SEETRAAAPQAWA----GPMEEPPQAQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATA 441

Query: 249 DAFDVASFLDKSEVPSTSSSSSVLASCNP 277
           DA ++    D  E  + ++ ++V  +  P
Sbjct: 442 DATEIHDAADTIETDTATADTTVANNVPP 470


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 39   QLPAQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIP 98
            Q+  + ++LE R+ +      + +  +    + LR+      + I      LNK    + 
Sbjct: 2115 QMKQKDEDLERRLEQAEEKHLKEKKNMQEKLDALRREKVHLEETIGEIQVTLNKKDKEVQ 2174

Query: 99   ELEQTLDNLLKLKASF-----NLEDGHASSLEEVKK 129
            +L++ LD+ +   A+F     +L+D     ++E KK
Sbjct: 2175 QLQENLDSTVTQLAAFTKSMSSLQDDRDRVIDEAKK 2210


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 239  VSTPEEILFEDAFDVASFLDKS--EVPSTSSSSSVLASCNP-ENPEEKFQLYMQIINFFK 295
            + + EE  FE+   V S LD S  ++PST+  S   A  N    P EK Q          
Sbjct: 1343 IESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAIENLIGKPTEKSQTPKDNSTASA 1402

Query: 296  GLSCANTQVKQEASFPVDEEMIMLQCTETFD 326
             L+   T   QEA  P +EE  +L+ T+  D
Sbjct: 1403 SLASNGTSGGQEAGAPEEEEDELLRVTDLVD 1433


>gi|24497609 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 42  AQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELE 101
           AQL+ L ++ +     Q RH    A   N   +T+    + I S  + + K K     L+
Sbjct: 331 AQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLD 390

Query: 102 QTLDNLLKLKASFNLEDGHASSLEEVKKE 130
           Q LD +L  +    LED   S LEE+ KE
Sbjct: 391 QELDFILSQQK--ELED-LLSPLEELVKE 416


>gi|24497607 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 42  AQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELE 101
           AQL+ L ++ +     Q RH    A   N   +T+    + I S  + + K K     L+
Sbjct: 331 AQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLD 390

Query: 102 QTLDNLLKLKASFNLEDGHASSLEEVKKE 130
           Q LD +L  +    LED   S LEE+ KE
Sbjct: 391 QELDFILSQQK--ELED-LLSPLEELVKE 416


>gi|24497605 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 42  AQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELE 101
           AQL+ L ++ +     Q RH    A   N   +T+    + I S  + + K K     L+
Sbjct: 331 AQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLD 390

Query: 102 QTLDNLLKLKASFNLEDGHASSLEEVKKE 130
           Q LD +L  +    LED   S LEE+ KE
Sbjct: 391 QELDFILSQQK--ELED-LLSPLEELVKE 416


>gi|24497603 nucleoporin 62kDa [Homo sapiens]
          Length = 522

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 42  AQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELE 101
           AQL+ L ++ +     Q RH    A   N   +T+    + I S  + + K K     L+
Sbjct: 331 AQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLD 390

Query: 102 QTLDNLLKLKASFNLEDGHASSLEEVKKE 130
           Q LD +L  +    LED   S LEE+ KE
Sbjct: 391 QELDFILSQQK--ELED-LLSPLEELVKE 416


>gi|26051235 nucleoporin 133kDa [Homo sapiens]
          Length = 1156

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 20  QLIMATPEENSNPHDRATPQLPAQLQELEHRVAR--RRLSQARHRATLAALFNNLRKTVY 77
           QLI   PE +   H    PQ    L  +  +V+     LS +      + L++  R + Y
Sbjct: 228 QLIRLIPESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFY 287

Query: 78  SQSDLIASKWQVLNKAKSH 96
           S +    SKW++ + ++ H
Sbjct: 288 SLTSSNISKWELDDSSEKH 306


>gi|118918423 hypothetical protein LOC286207 [Homo sapiens]
          Length = 520

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)

Query: 53  RRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKA 112
           R  LSQ   R+    + N   K+   Q  L   + QV       +  L+Q L N  K++A
Sbjct: 308 RLLLSQLEQRSLQLQVDNQALKSQRDQLSLQLEQQQV------DLQRLQQELANEQKVRA 361

Query: 113 SFNLEDGHASS-LEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQE 171
           S       A+S L+ + + +       DS       PW+    +Q + +L+ +    PQ+
Sbjct: 362 SLEAALVQATSFLQNILQMHRDE---EDSDVDVTFQPWHKEMLQQLLVMLSSTVATRPQK 418

Query: 172 AALP 175
           AA P
Sbjct: 419 AACP 422


>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo
            sapiens]
          Length = 1233

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 120  HASSLEEVKKEYASMYSGNDSFPQ-NGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVS 178
            H S+ E         YS   SFP+ + S   +L  + +  DL     ++ P++ A     
Sbjct: 1014 HLSASERPLSPARCHYS---SFPRADRSGRPFLPLFPELEDL----PLLGPEQLARR--E 1064

Query: 179  AAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACA 220
            A +   W   S  R ASL  + A+    P++L   C  PACA
Sbjct: 1065 ALLHAAWARGSRPRHASLPSSVAEAFARPSSLPAGCTGPACA 1106


>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
          Length = 1077

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 13/143 (9%)

Query: 12  FNQEIRLWQ------LIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATL 65
           F QE+  W+      +       NS+  D +T Q P+       R      +      T 
Sbjct: 688 FEQEVEEWEEEQSCKIPQMESSTNSSSQDYSTSQEPSVASSHGVRCLSSEHAVIVKEQTA 747

Query: 66  AALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLE 125
            A+ N  R   Y +S + A+  +V+       P ++  +  + K + +F+ +   A  ++
Sbjct: 748 QAIANTAR--AYEKSGVEAALSEVMLS-----PAMQGVILAIAKARQTFDRDGSEAGLIK 800

Query: 126 EVKKEYASMYSGNDSFPQNGSSP 148
              +EY+ +Y      P + S P
Sbjct: 801 AFHEEYSRLYQLAKETPTSHSDP 823


>gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]
          Length = 708

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 57  SQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNL 116
           S     A+L   F+   K   S  +     W+ L     + PEL+       +     +L
Sbjct: 432 SDGEWSASLPHRFSGTEKDQSSSDE----SWETLPGKDENEPELQSDSSGPEEENQELSL 487

Query: 117 EDGHASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGS 164
           ++G  +SLEE +  +      N+S    G+ P   N + Q   +L G+
Sbjct: 488 QEGEQTSLEEGEIPWLQYNEVNESSSDEGNEP--ANEFAQPAFMLDGN 533


>gi|46852174 kinesin family member 3A [Homo sapiens]
          Length = 699

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 257 LDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIIN 292
           ++KSE P +  +  V+  C P N  EK   Y Q ++
Sbjct: 3   INKSEKPESCDNVKVVVRCRPLNEREKSMCYKQAVS 38


>gi|10864047 epidermal growth factor receptor pathway substrate
           15-like 1 [Homo sapiens]
          Length = 864

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 27  EENSNPHDRATP---QLPAQLQELEHRVARRRLSQARHRATLA----------ALFNNLR 73
           +E  N  DR T    +L AQ Q+ + R+      +A+ R  L+           + ++L+
Sbjct: 422 QELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLSDVRQKCQDETQMISSLK 481

Query: 74  KTVYSQSDLIASKWQVLNKAKSHIPELEQ 102
             + SQ   + S+   LN+AKS +  L+Q
Sbjct: 482 TQIQSQESDLKSQEDDLNRAKSELNRLQQ 510


>gi|144922725 general transcription factor IIE, polypeptide 1, alpha
           56kDa [Homo sapiens]
          Length = 439

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 64  TLAALFNNLRKTVYS---QSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH 120
           TL A FN   + +Y+   +++ +   +++L    + IP L+Q+ D+      + +L  GH
Sbjct: 175 TLLARFNEQIEPIYALLRETEDVNLAYEILEPEPTEIPALKQSKDHAATTAGAASLAGGH 234

Query: 121 ASSLEEVK-KEYASMYSGN 138
                  K   Y  +Y+ N
Sbjct: 235 HREAWATKGPSYEDLYTQN 253


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 168  TPQEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDS 227
            TP E   P+ S  +SH    ++    ++L       +    T  EA   P  AEG+   +
Sbjct: 977  TPSEGTTPLTSTPVSHTL--VANSEASTLSTTPVDSNTPLTTSTEASSPPPTAEGTSMPT 1034

Query: 228  GVDSQGAS 235
               S+G++
Sbjct: 1035 STPSEGST 1042


>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
          Length = 977

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 226 DSGVDSQGASCSLVSTPEEILFEDAFDVASFLDKSE-VPSTSS 267
           D  VD +G+   L STP   LF    D+ + LD S  +PST S
Sbjct: 209 DCYVDPRGSPALLPSTPTMPLFPHVLDLLAPLDSSRTLPSTDS 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.127    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,670,714
Number of Sequences: 37866
Number of extensions: 552328
Number of successful extensions: 1561
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 33
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.