HPS5 25665

Name: HPS5	Sequence: fasta or formatted (1129aa)		NCBI GI: 31657123
Description: Hermansky-Pudlak syndrome 5 isoform a		Referenced in: Integrins Lysosomes and Related Organelles
Other entries for this name: alt prot [1015aa] Hermansky-Pudlak syndrome 5 isoform b alt prot [1015aa] Hermansky-Pudlak syndrome 5 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 58 4 C cysteine 3.0 34 2 D aspartate 5.9 67 3 E glutamate 8.4 95 3 F phenylalanine 4.0 45 2 G glycine 4.4 50 3 H histidine 2.7 30 3 I isoleucine 4.4 50 2 K lysine 5.5 62 2 L leucine 13.4 151 3 M methionine 1.6 18 1 N asparagine 2.7 30 1 P proline 4.8 54 3 Q glutamine 4.0 45 2 R arginine 5.5 62 3 S serine 11.1 125 2 T threonine 4.5 51 2 V valine 5.6 63 3 W tryptophan 1.6 18 1 Y tyrosine 1.9 21 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Hermansky-Pudlak syndrome 5 isoform a HPS5 0.898 Hermansky-Pudlak syndrome 5 isoform b HPS5 0.898 Hermansky-Pudlak syndrome 5 isoform b TECPR2 0.036 tectonin beta-propeller repeat containing 2 SYCP2L 0.007 synaptonemal complex protein 2-like FAM114A1 0.007 hypothetical protein LOC92689 CORO1B 0.006 coronin, actin binding protein, 1B CORO1B 0.006 coronin, actin binding protein, 1B CORO1A 0.006 coronin, actin binding protein, 1A SP140 0.005 SP140 nuclear body protein isoform 1 MTMR7 0.005 myotubularin related protein 7 TTBK1 0.005 tau tubulin kinase 1 STXBP5 0.005 syntaxin binding protein 5 (tomosyn) isoform b [Hom... STXBP5 0.005 syntaxin binding protein 5 (tomosyn) isoform a [Hom... STXBP5L 0.005 syntaxin binding protein 5-like GTF2F1 0.004 general transcription factor IIF, polypeptide 1, 74... WDR24 0.004 WD repeat domain 24 MDM1 0.004 mouse Mdm1 nuclear protein homolog isoform 1 YTHDC1 0.004 splicing factor YT521-B isoform 2 YTHDC1 0.004 splicing factor YT521-B isoform 1 RYR1 0.004 skeletal muscle ryanodine receptor isoform 2 RYR1 0.004 skeletal muscle ryanodine receptor isoform 1 SSRP1 0.004 structure specific recognition protein 1 CHD9 0.004 chromodomain helicase DNA binding protein 9 CHIC1 0.004 cysteine-rich hydrophobic domain 1 RB1CC1 0.004 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... RB1CC1 0.004 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... CCDC62 0.004 coiled-coil domain containing 62 isoform b CCDC62 0.004 coiled-coil domain containing 62 isoform a WDHD1 0.004 WD repeat and HMG-box DNA binding protein 1 isoform ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.