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Search of human proteins with 27804315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27804315 homeobox C12 [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27804315 homeobox C12 [Homo sapiens] 592 e-170
gi|194353946 homeobox D12 [Homo sapiens] 184 1e-46
gi|7657166 homeobox C11 [Homo sapiens] 99 5e-21
gi|23510368 homeobox D11 [Homo sapiens] 98 9e-21
gi|84570137 homeobox B3 [Homo sapiens] 94 2e-19
gi|182765442 homeobox A10 isoform a [Homo sapiens] 91 1e-18
gi|194363768 homeobox D9 [Homo sapiens] 89 3e-18
gi|5031759 homeobox A11 [Homo sapiens] 82 7e-16
gi|23097236 homeobox A9 [Homo sapiens] 82 7e-16
gi|62865866 homeobox B13 [Homo sapiens] 81 9e-16
gi|15029508 homeobox B9 [Homo sapiens] 80 2e-15
gi|116734702 homeobox D13 [Homo sapiens] 79 3e-15
gi|24497536 homeobox C13 [Homo sapiens] 79 3e-15
gi|24497547 homeobox C9 [Homo sapiens] 79 3e-15
gi|24497533 homeobox C10 [Homo sapiens] 79 3e-15
gi|23510366 homeobox D10 [Homo sapiens] 79 4e-15
gi|24497554 homeobox A13 [Homo sapiens] 79 4e-15
gi|24497551 homeobox A10 isoform b [Homo sapiens] 79 4e-15
gi|13375632 homeobox D1 [Homo sapiens] 75 8e-14
gi|19923391 homeobox D3 [Homo sapiens] 74 2e-13
gi|15029506 homeobox D8 [Homo sapiens] 74 2e-13
gi|23397672 homeobox D4 [Homo sapiens] 72 5e-13
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 72 5e-13
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 72 7e-13
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 71 9e-13
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 71 9e-13
gi|85068580 homeobox B7 [Homo sapiens] 71 1e-12
gi|13273317 homeobox B8 [Homo sapiens] 71 1e-12
gi|12056969 homeobox C8 [Homo sapiens] 70 2e-12
gi|148613882 homeobox A4 [Homo sapiens] 70 2e-12
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 592 bits (1527), Expect = e-170
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP 60
MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP
Sbjct: 1 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEP 60
Query: 61 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP 120
CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP
Sbjct: 61 CNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGP 120
Query: 121 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK 180
GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK
Sbjct: 121 GAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNK 180
Query: 181 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT 240
GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT
Sbjct: 181 GAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFIT 240
Query: 241 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF 282
RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
Sbjct: 241 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF 282
>gi|194353946 homeobox D12 [Homo sapiens]
Length = 270
Score = 184 bits (466), Expect = 1e-46
Identities = 128/294 (43%), Positives = 159/294 (54%), Gaps = 36/294 (12%)
Query: 1 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPR-------RDNVCSL 53
M E +L G+VG L+N+ + D+FYF N R +G QL LP +SYPR C+
Sbjct: 1 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP 60
Query: 54 SWPS-AEPCNGYPQPYLGS--PVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKRE 110
+ P+ A G+ QPYL P+ L PP T + E K Y E A E
Sbjct: 61 AQPAGATAFGGFSQPYLAGSGPLGLQPP---TAKDGPEEQAKFYAPEAAAGP-------E 110
Query: 111 ERGRD-PGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESD 169
ERGR P P ++L P + A KYDYA G G G P + D
Sbjct: 111 ERGRTRPSFAPESSLAPAVAALKAA---KYDYA--GVGRATPGSTTLLQGAPCAPGFKDD 165
Query: 170 SSSSL-LNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE 228
+ L LN + AG S + P P G PW R+RKKRKPY+K Q+AE
Sbjct: 166 TKGPLNLNMTVQAAGVA---SCLRPSLP------DGLPWGAAPGRARKKRKPYTKQQIAE 216
Query: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF 282
LE EFLVNEFI RQ+R+ELS+RLNLSDQQVKIWFQNRRMKKKR++LREQAL+ +
Sbjct: 217 LENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY 270
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 98.6 bits (244), Expect = 5e-21
Identities = 90/276 (32%), Positives = 120/276 (43%), Gaps = 49/276 (17%)
Query: 23 TFYFPNFRASGAQLPGLPS--LSYPRRDNVCSLSWPS--AEPC------NGYPQPYLGSP 72
T+Y P F + LP PS +SYP V + S EP N Y Y +
Sbjct: 38 TYYMPEFSTVSSFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAAD 97
Query: 73 VSLN----PPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLE 128
++ PP T L + E G + P A P A P +
Sbjct: 98 ELMHRECLPPSTVTEILMKNEGSYGGHHHPSA---------------PHATPAGFYSSVN 142
Query: 129 PSG--PPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSL-------ESDSSSSLLNEGN 179
+ P A +D A GGG PP +PP C E+ +S L +
Sbjct: 143 KNSVLPQAFDRFFDNAYCGGGD-------PPAEPP-CSGKGEAKGEPEAPPASGLASRAE 194
Query: 180 KGAGAGDPGSLVSPLNPGGGLSASGAPWY---PINSRSRKKRKPYSKLQLAELEGEFLVN 236
GA A +P + G S + P P R+RKKR PYSK Q+ ELE EF N
Sbjct: 195 AGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFN 254
Query: 237 EFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
+I +++R +LS LNL+D+QVKIWFQNRRMK+K+L
Sbjct: 255 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 97.8 bits (242), Expect = 9e-21
Identities = 65/156 (41%), Positives = 79/156 (50%), Gaps = 16/156 (10%)
Query: 118 AGPGAALLPLEPSGPPALGFKYDYAAGGGGGDG-GGGAGPPHDPPSCQSLESDSSSSLLN 176
A PG +P PPA A G G GGG G P C S
Sbjct: 184 AAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSP-----CTKATPGSEPKGAA 238
Query: 177 EGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVN 236
EG+ G G G PG G S + P RSRKKR PY+K Q+ ELE EF N
Sbjct: 239 EGSGGDGEGPPGE--------AGAEKSSSAVAP--QRSRKKRCPYTKYQIRELEREFFFN 288
Query: 237 EFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
+I +++R +LS LNL+D+QVKIWFQNRRMK+K+L
Sbjct: 289 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
Score = 28.1 bits (61), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 138 KYDYAAGGGGGDGGGGA 154
K+ Y GGGGG GGG+
Sbjct: 72 KWPYRGGGGGGSAGGGS 88
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 93.6 bits (231), Expect = 2e-19
Identities = 72/223 (32%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 70 GSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAG---PGAALLP 126
G V PPF L Y R C+ G + ++ PG A P
Sbjct: 28 GFDVPPQPPFQAATHLEG-----DYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEP 82
Query: 127 LE--PSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSL----------ESDSSSSL 174
L P PP + G G +GPP P S ES +S L
Sbjct: 83 LSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKL 142
Query: 175 LN------EGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE 228
N EG G G G G GGG G P ++ S++ R Y+ QL E
Sbjct: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVE 202
Query: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
LE EF N ++ R RR E+++ LNLS++Q+KIWFQNRRMK K+
Sbjct: 203 LEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 245
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 90.9 bits (224), Expect = 1e-18
Identities = 86/259 (33%), Positives = 110/259 (42%), Gaps = 56/259 (21%)
Query: 27 PNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELA 86
P A+ A+L P P + C+L S P GY L+ +G
Sbjct: 179 PKVSATAAELAPFPRGPPP---DGCALGTSSGVPVPGY--------FRLSQAYGTA---- 223
Query: 87 RVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGG 146
KGY GGGG + GAGP P+ PP GF A G
Sbjct: 224 -----KGY-----GSGGGGA-------QQLGAGPF-------PAQPPGRGFDLPPALASG 259
Query: 147 GGDGGGGAGPPHDPP----SCQS-------LESDSSSSLLNEGNKGAGAGDPGSLVSPLN 195
D PP +C S E+ +SSS E + A S SP
Sbjct: 260 SADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSP---APSESSKASPEK 316
Query: 196 P--GGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNL 253
G + A W S RKKR PY+K Q ELE EFL N ++TR+RR E+S ++L
Sbjct: 317 DSLGNSKGENAANWLTAKS-GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHL 375
Query: 254 SDQQVKIWFQNRRMKKKRL 272
+D+QVKIWFQNRRMK K++
Sbjct: 376 TDRQVKIWFQNRRMKLKKM 394
Score = 35.0 bits (79), Expect = 0.074
Identities = 29/64 (45%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 100 AEGGGGGLKREERGRDPGAG----PGAALLP--LEPSGP-PALGFKYDYAAGGGGGDGGG 152
A GGGGG G G P AA LP L+ G P LG K + AA G G GGG
Sbjct: 42 AGGGGGGAGGGGGGGYYAHGGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGG 101
Query: 153 GAGP 156
G GP
Sbjct: 102 GLGP 105
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 89.4 bits (220), Expect = 3e-18
Identities = 99/344 (28%), Positives = 132/344 (38%), Gaps = 83/344 (24%)
Query: 1 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLP---------------SLSYP 45
M L+ +V L+ H GD + F G G P S S+
Sbjct: 11 MSSSGTLSNYYVDSLIG-HEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFA 69
Query: 46 RRDNVCSLSW-------PSAEPCNGYPQPYLGSP---VSLNPPFGRTCELARVEDGKGYY 95
R V S SW P+A +G PY+ P S + P GR + +E G+
Sbjct: 70 PRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEP-GRYVR-SWMEPLPGF- 126
Query: 96 REPCAEGGGGGLKREERGRDPGAGPG--------------------AALLPLEPSGPPAL 135
P GGGGG GR P GP A S +L
Sbjct: 127 --PGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSL 184
Query: 136 GFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAG---------D 186
+ G +GP SC S + +++ GAG G +
Sbjct: 185 SSSSKRTECSVARESQGSSGPEF---SCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSE 241
Query: 187 PGSLVSPLNPGGGLSAS-----------------GAPWYPINSRS-RKKRKPYSKLQLAE 228
P + PG L A W I++RS RKKR PY+K Q E
Sbjct: 242 PSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANW--IHARSTRKKRCPYTKYQTLE 299
Query: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
LE EFL N ++TR RR E++ LNL+++QVKIWFQNRRMK K++
Sbjct: 300 LEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 81.6 bits (200), Expect = 7e-16
Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 106 GLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQS 165
G K E+G P A +A +G PA D GGG + A +S
Sbjct: 161 GDKSAEKG-PPAATATSAAAAAAATGAPATSSS-DSGGGGGCRETAAAAEEKERRRRPES 218
Query: 166 LESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQ 225
S SSS E G +G R+RKKR PY+K Q
Sbjct: 219 SSSPESSSGHTEDKAGGSSGQ--------------------------RTRKKRCPYTKYQ 252
Query: 226 LAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
+ ELE EF + +I +++R +LS LNL+D+QVKIWFQNRRMK+K++
Sbjct: 253 IRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKI 299
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 81.6 bits (200), Expect = 7e-16
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 167 ESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQL 226
E S +E N +G + P NP A W S +RKKR PY+K Q
Sbjct: 167 EKQPSEGAFSENNAENESGGDKPPIDPNNPA-------ANWLHARS-TRKKRCPYTKHQT 218
Query: 227 AELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
ELE EFL N ++TR RR E++ LNL+++QVKIWFQNRRMK K++
Sbjct: 219 LELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 264
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 81.3 bits (199), Expect = 9e-16
Identities = 77/250 (30%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 39 LPSLSYPRRDNVCSLSWPS-AEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYR- 96
+P+++Y D S P PC G PQ +PV P+G G GYY
Sbjct: 43 MPAVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPV----PYGYF--------GGGYYSC 90
Query: 97 -------EPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGD 149
+PCA+ E P AG P E + P Y A
Sbjct: 91 RVSRSSLKPCAQAATLAAYPAET---PTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVS 147
Query: 150 GGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYP 209
G P +P L DS S G + G P A + +P
Sbjct: 148 VVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHP 207
Query: 210 INS----RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNR 265
++ R RKKR PYSK QL ELE E+ N+FIT+ +RR++S +LS++Q+ IWFQNR
Sbjct: 208 PDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNR 267
Query: 266 RMKKKRLLLR 275
R+K+K++L +
Sbjct: 268 RVKEKKVLAK 277
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 80.5 bits (197), Expect = 2e-15
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 205 APWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQN 264
A W S SRKKR PY+K Q ELE EFL N ++TR RR E++ LNLS++QVKIWFQN
Sbjct: 177 ANWLHARS-SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQN 235
Query: 265 RRMKKKRL 272
RRMK K++
Sbjct: 236 RRMKMKKM 243
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 79.3 bits (194), Expect = 3e-15
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
R RKKR PY+KLQL ELE E+ +N+FI + +RR +S NLS++QV IWFQNRR+K K++
Sbjct: 275 RGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKI 334
Query: 273 L 273
+
Sbjct: 335 V 335
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 79.3 bits (194), Expect = 3e-15
Identities = 35/66 (53%), Positives = 53/66 (80%)
Query: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
R RKKR PY+K+QL ELE E+ ++FIT+++RR +S NLS++QV IWFQNRR+K+K++
Sbjct: 259 RGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKV 318
Query: 273 LLREQA 278
+ + +A
Sbjct: 319 VSKSKA 324
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 125 LPLEPSGPPALGFKYDYAA-----GGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGN 179
L L P P +L + Y+ +A GGGGG GGGG G C + S+
Sbjct: 5 LLLHPRWPESLMYVYEDSAAESGIGGGGGGGGGGTGGAGG--GCSGASPGKAPSM----- 57
Query: 180 KGAGAGDPGSLVSPLNPGGGLSASGAP 206
G G+ P S L P L AP
Sbjct: 58 DGLGSSCPASHCRDLLPHPVLGRPPAP 84
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 79.3 bits (194), Expect = 3e-15
Identities = 64/164 (39%), Positives = 83/164 (50%), Gaps = 27/164 (16%)
Query: 121 GAALLPLEPSGPPALGFKYDYAAGG----GGGDGG-------GGAGPPHDPPSCQSLESD 169
GA P P+G K D G G G+G G G D Q+L S
Sbjct: 102 GAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAP-QTLPSP 160
Query: 170 SSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRS-RKKRKPYSKLQLAE 228
+ +L +K A + P NP A W I++RS RKKR PY+K Q E
Sbjct: 161 EADALAGSKHKEEKAD-----LDPSNPV-------ANW--IHARSTRKKRCPYTKYQTLE 206
Query: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
LE EFL N ++TR RR E++ LNL+++QVKIWFQNRRMK K++
Sbjct: 207 LEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 250
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 79.3 bits (194), Expect = 3e-15
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 215 RKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
RKKR PY+K Q ELE EFL N ++TR+RR E+S +NL+D+QVKIWFQNRRMK K++
Sbjct: 269 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKM 326
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 79.0 bits (193), Expect = 4e-15
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 215 RKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
RKKR PY+K Q ELE EFL N ++TR+RR E+S +NL+D+QVKIWFQNRRMK K++
Sbjct: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKM 324
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 79.0 bits (193), Expect = 4e-15
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 213 RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
R RKKR PY+K+QL ELE E+ N+FIT+ +RR +S NLS++QV IWFQNRR+K+K++
Sbjct: 321 RGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380
Query: 273 L 273
+
Sbjct: 381 I 381
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 79.0 bits (193), Expect = 4e-15
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 197 GGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQ 256
G + A W S RKKR PY+K Q ELE EFL N ++TR+RR E+S ++L+D+
Sbjct: 4 GNSKGENAANWLTAKS-GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 62
Query: 257 QVKIWFQNRRMKKKRL 272
QVKIWFQNRRMK K++
Sbjct: 63 QVKIWFQNRRMKLKKM 78
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 74.7 bits (182), Expect = 8e-14
Identities = 64/205 (31%), Positives = 85/205 (41%), Gaps = 54/205 (26%)
Query: 111 ERGRDPGAGPGAALLPLEPSGPPALGFKYDY------AAGGGGGD---------GGGGA- 154
E G P A G A SGP YD+ AA GG GGG+
Sbjct: 92 EPGAAPAAAAGGADYGFLGSGPA-----YDFPGVLGRAADDGGSHVHYATSAVFSGGGSF 146
Query: 155 -----------GPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSA- 202
G P P+C +D + PG+ ++P GL A
Sbjct: 147 LLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTASPA-----PGTYPKSVSPASGLPAA 201
Query: 203 -SGAPWYPINSRSRKK---------------RKPYSKLQLAELEGEFLVNEFITRQRRRE 246
S W + + KK R +S QL ELE EF N+++TR RR E
Sbjct: 202 FSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIE 261
Query: 247 LSDRLNLSDQQVKIWFQNRRMKKKR 271
+++ L+L+D QVKIWFQNRRMK+K+
Sbjct: 262 IANCLHLNDTQVKIWFQNRRMKQKK 286
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 73.6 bits (179), Expect = 2e-13
Identities = 65/227 (28%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 60 PCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGG--GGGLKREERGRDPG 117
P YP P S + + P G C + R P +G G R G G
Sbjct: 46 PHQPYPPPAAASSLDTDYP-GSACSI----QSSAPLRAPAHKGAELNGSCMRPGTGNSQG 100
Query: 118 AGPGAA-------LLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESD- 169
G G+ P +P PP GGG G P+ S ++
Sbjct: 101 GGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQI 160
Query: 170 -----SSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKL 224
S + N A AG+ SP P S++ R Y+
Sbjct: 161 FPWMKESRQNSKQKNSCATAGESCEDKSPPGPA----------------SKRVRTAYTSA 204
Query: 225 QLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
QL ELE EF N ++ R RR E+++ LNL+++Q+KIWFQNRRMK K+
Sbjct: 205 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/200 (31%), Positives = 84/200 (42%), Gaps = 49/200 (24%)
Query: 98 PCAEGGGGGLKREERGRD---PGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGA 154
P G GG RE RG++ PG G AA P PP
Sbjct: 78 PSGTGCGG---REGRGQEYFHPGGGSPAAAYQAAPPPPPH-------------------P 115
Query: 155 GPPHDPPSCQSLE---------------------SDSSSSLLNEGNKGAGAGDPGSLVSP 193
PP PP C + + + L+ + + +G+ G
Sbjct: 116 PPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDH 175
Query: 194 LNPGGGLSASGAPWYPINSRS--RKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRL 251
LN S PW + R+ R+ YS+ Q ELE EFL N ++TR+RR E+S L
Sbjct: 176 LNQSSSPSQM-FPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHAL 234
Query: 252 NLSDQQVKIWFQNRRMKKKR 271
L+++QVKIWFQNRRMK K+
Sbjct: 235 ALTERQVKIWFQNRRMKWKK 254
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 72.0 bits (175), Expect = 5e-13
Identities = 64/204 (31%), Positives = 88/204 (43%), Gaps = 44/204 (21%)
Query: 93 GYYREPCAEGGGGGLK-----------REERGRDP----GAGPGAALLPLEPSGPPALGF 137
GY E A+ GGG + R + G P G GPG+AL PA G
Sbjct: 27 GYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSAL--------PARGH 78
Query: 138 KYDYAAGGG--GGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSL----- 190
+ GG G PP PP+ S S + G P +
Sbjct: 79 GQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMK 138
Query: 191 ---VSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRREL 247
V+ +NP G P ++ R Y++ Q+ ELE EF N ++TR+RR E+
Sbjct: 139 KVHVNSVNPN---YTGGEP--------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEI 187
Query: 248 SDRLNLSDQQVKIWFQNRRMKKKR 271
+ L LS++Q+KIWFQNRRMK K+
Sbjct: 188 AHTLCLSERQIKIWFQNRRMKWKK 211
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 72.0 bits (175), Expect = 5e-13
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 101 EGGGGGLKREE------RGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGA 154
E GGGG + E PGA P A + GPPA D +G G
Sbjct: 59 ERGGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSV--DSLSGQGQPSSSDTE 116
Query: 155 GPPHDPPSCQSLESDSSSSLLNEGNKGAGA----GDP--GSLVSPLNPG-GGLSASGAPW 207
++ ++ + + +KG+G+ G P GS N G GG + G
Sbjct: 117 SDFYEEIEVSCTPDCATGNAEYQHSKGSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLA 176
Query: 208 YPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRM 267
+ + R+ R +++ Q+A LE EF +++R RR EL+ LNL + +K+WFQNRRM
Sbjct: 177 CSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRM 236
Query: 268 KKKR 271
K KR
Sbjct: 237 KDKR 240
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 71.6 bits (174), Expect = 7e-13
Identities = 32/63 (50%), Positives = 49/63 (77%)
Query: 210 INSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKK 269
+NS+ RK+R ++K Q+ ELE EF + ++TR RR E++ L+L+++QVK+WFQNRRMK
Sbjct: 183 VNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKW 242
Query: 270 KRL 272
KR+
Sbjct: 243 KRV 245
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 71.2 bits (173), Expect = 9e-13
Identities = 33/62 (53%), Positives = 49/62 (79%)
Query: 211 NSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 270
+S++RK+R ++K QL ELE EF + ++TR RR E++ L+LS++QVK+WFQNRRMK K
Sbjct: 53 SSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWK 112
Query: 271 RL 272
R+
Sbjct: 113 RV 114
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 71.2 bits (173), Expect = 9e-13
Identities = 33/62 (53%), Positives = 49/62 (79%)
Query: 211 NSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKK 270
+S++RK+R ++K QL ELE EF + ++TR RR E++ L+LS++QVK+WFQNRRMK K
Sbjct: 168 SSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWK 227
Query: 271 RL 272
R+
Sbjct: 228 RV 229
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 70.9 bits (172), Expect = 1e-12
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 108 KREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLE 167
+R G GA A++ L P G G + G G G P C E
Sbjct: 39 QRPGYGAGSGASFAASMQGLYPGGGGMAG-----QSAAGVYAAGYGLEPSSFNMHCAPFE 93
Query: 168 SDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGA----PWYPINSRSRKK-RKPYS 222
+ S + K AGA + L+A PW + RK+ R+ Y+
Sbjct: 94 QNLSGVCPGDSAKAAGAKEQRD--------SDLAAESNFRIYPWMRSSGTDRKRGRQTYT 145
Query: 223 KLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
+ Q ELE EF N ++TR+RR E++ L L+++Q+KIWFQNRRMK K+
Sbjct: 146 RYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKK 194
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 70.9 bits (172), Expect = 1e-12
Identities = 54/151 (35%), Positives = 73/151 (48%), Gaps = 16/151 (10%)
Query: 129 PSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGN------KGA 182
PS ++ + A GD G G +DP QSL L+ + G
Sbjct: 61 PSSLSTAPYQQNPCAVACHGDPGNFYG--YDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
Query: 183 GAGDPGSLVSPLNPGGGLSASGAPWYPINSRS--RKKRKPYSKLQLAELEGEFLVNEFIT 240
G GS SP PW + + R+ R+ YS+ Q ELE EFL N ++T
Sbjct: 119 GEEAEGSEQSPS------PTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLT 172
Query: 241 RQRRRELSDRLNLSDQQVKIWFQNRRMKKKR 271
R+RR E+S L L+++QVKIWFQNRRMK K+
Sbjct: 173 RKRRIEVSHALGLTERQVKIWFQNRRMKWKK 203
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 70.5 bits (171), Expect = 2e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 206 PWYPINSRSRKK-RKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQN 264
PW ++ R+ R+ YS+ Q ELE EFL N ++TR+RR E+S L L+++QVKIWFQN
Sbjct: 140 PWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQN 199
Query: 265 RRMKKKR 271
RRMK K+
Sbjct: 200 RRMKWKK 206
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 70.1 bits (170), Expect = 2e-12
Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 126 PLEPSG-PPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGA 184
PL+P PPA + + A G GG A P+C L +D S L
Sbjct: 143 PLQPRAVPPAAPRRCEAAPATPGVPAGGSA------PACPLLLADKSPLGLKGKEPVVYP 196
Query: 185 GDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRR 244
VS +NP G P ++ R Y++ Q+ ELE EF N ++TR+RR
Sbjct: 197 WMKKIHVSAVNPSYN---GGEP--------KRSRTAYTRQQVLELEKEFHFNRYLTRRRR 245
Query: 245 RELSDRLNLSDQQVKIWFQNRRMKKKR 271
E++ L LS++QVKIWFQNRRMK K+
Sbjct: 246 IEIAHTLCLSERQVKIWFQNRRMKWKK 272
Score = 31.6 bits (70), Expect = 0.82
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 127 LEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPP 161
+EP PP +Y +G GG DGG G GP + P
Sbjct: 13 IEPKFPPFE--EYAQHSGSGGADGGPGGGPGYQQP 45
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.139 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,731
Number of Sequences: 37866
Number of extensions: 1053200
Number of successful extensions: 8918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 506
Number of HSP's that attempted gapping in prelim test: 5108
Number of HSP's gapped (non-prelim): 2490
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.