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Search of human proteins with 27477101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]
(256 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens] 508 e-144
gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens] 464 e-131
gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens] 462 e-130
gi|94721265 sarcoglycan zeta [Homo sapiens] 282 2e-76
gi|4557847 gamma sarcoglycan [Homo sapiens] 248 3e-66
gi|4506913 sarcoglycan, beta [Homo sapiens] 37 0.013
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 31 0.92
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 28 6.0
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 28 7.8
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho... 28 7.8
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 28 7.8
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom... 28 7.8
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom... 28 7.8
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 28 7.8
gi|15619015 protein kinase, cAMP-dependent, catalytic, gamma [Ho... 28 7.8
gi|199560800 kinesin family member 9 isoform 2 [Homo sapiens] 28 7.8
gi|199560791 kinesin family member 9 isoform 2 [Homo sapiens] 28 7.8
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 28 7.8
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 28 7.8
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 28 7.8
>gi|27477101 delta-sarcoglycan isoform 2 [Homo sapiens]
Length = 256
Score = 508 bits (1308), Expect = e-144
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM 60
MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
Sbjct: 1 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM 60
Query: 61 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK 120
NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
Sbjct: 61 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK 120
Query: 121 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET 180
VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
Sbjct: 121 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET 180
Query: 181 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRDEKDR 240
PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRDEKDR
Sbjct: 181 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRDEKDR 240
Query: 241 SSKSYSFNRPTLPITG 256
SSKSYSFNRPTLPITG
Sbjct: 241 SSKSYSFNRPTLPITG 256
>gi|21314619 delta-sarcoglycan isoform 1 [Homo sapiens]
Length = 290
Score = 464 bits (1194), Expect = e-131
Identities = 233/235 (99%), Positives = 235/235 (100%)
Query: 1 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM 60
MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM
Sbjct: 1 MMPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVM 60
Query: 61 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK 120
NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK
Sbjct: 61 NFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTK 120
Query: 121 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET 180
VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET
Sbjct: 121 VLTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIET 180
Query: 181 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVR 235
PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGE++
Sbjct: 181 PNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIK 235
>gi|189571662 delta-sarcoglycan isoform 3 [Homo sapiens]
Length = 289
Score = 462 bits (1189), Expect = e-130
Identities = 232/234 (99%), Positives = 234/234 (100%)
Query: 2 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMN 61
MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMN
Sbjct: 1 MPQEQYTHHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMN 60
Query: 62 FTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKV 121
FTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKV
Sbjct: 61 FTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKV 120
Query: 122 LTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETP 181
LTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETP
Sbjct: 121 LTQLITGPKAVEAYGKKFEVKTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETP 180
Query: 182 NVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVR 235
NVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGE++
Sbjct: 181 NVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEIK 234
>gi|94721265 sarcoglycan zeta [Homo sapiens]
Length = 312
Score = 282 bits (721), Expect = 2e-76
Identities = 139/236 (58%), Positives = 184/236 (77%), Gaps = 3/236 (1%)
Query: 2 MPQEQY--THHRSTMPGSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKV 59
M +EQY ++ +P + Q+Y VGIYGWRKRCLYFFVLLL++ ++VNLAMTIWILKV
Sbjct: 14 MTREQYILATQQNNLPRTENAQLYPVGIYGWRKRCLYFFVLLLLVTMIVNLAMTIWILKV 73
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQT 119
MNFT+DGMGNLR+T+KG++LEG SEFL PLY KEI SR + L +S RNVTVN N
Sbjct: 74 MNFTVDGMGNLRVTKKGIRLEGISEFLLPLYVKEIHSRKDSPLVLQSDRNVTVNARNHMG 133
Query: 120 KVLTQLITGPKAVEAYGKKFEVK-TVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSI 178
++ QL G AVEA K+FEV+ + G++LFSAD +E+ +GAE+L+V G EG VF S+
Sbjct: 134 QLTGQLTIGADAVEAQCKRFEVRASEDGRVLFSADEDEITIGAEKLKVTGTEGAVFGHSV 193
Query: 179 ETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEV 234
ETP++RA+P ++LRLESPTRSL+MEAP+GV+++A AG+ +ATCR EL L+S +GE+
Sbjct: 194 ETPHIRAEPSQDLRLESPTRSLIMEAPRGVQVSAAAGDFKATCRKELHLQSTEGEI 249
>gi|4557847 gamma sarcoglycan [Homo sapiens]
Length = 291
Score = 248 bits (634), Expect = 3e-66
Identities = 123/211 (58%), Positives = 160/211 (75%)
Query: 22 VYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEG 81
VYK+GIYGWRKRCLY FVLLL+I+++VNLA+TIWILKVM F+ GMG+L +T+ GL+LEG
Sbjct: 23 VYKIGIYGWRKRCLYLFVLLLLIILVVNLALTIWILKVMWFSPAGMGHLCVTKDGLRLEG 82
Query: 82 DSEFLQPLYAKEIQSRPGNALYFKSARNVTVNILNDQTKVLTQLITGPKAVEAYGKKFEV 141
+SEFL PLYAKEI SR ++L +S +NVTVN N + +V +L GPK VE ++F++
Sbjct: 83 ESEFLFPLYAKEIHSRVDSSLLLQSTQNVTVNARNSEGEVTGRLKVGPKMVEVQNQQFQI 142
Query: 142 KTVSGKLLFSADNNEVVVGAERLRVLGAEGTVFPKSIETPNVRADPFKELRLESPTRSLV 201
+ GK LF+ D EVVVG ++LRV G EG +F S+ETP VRADPF++LRLESPTRSL
Sbjct: 143 NSNDGKPLFTVDEKEVVVGTDKLRVTGPEGALFEHSVETPLVRADPFQDLRLESPTRSLS 202
Query: 202 MEAPKGVEINAEAGNMEATCRTELRLESKDG 232
M+AP+GV I A AG +EA + ++ S DG
Sbjct: 203 MDAPRGVHIQAHAGKIEALSQMDILFHSSDG 233
>gi|4506913 sarcoglycan, beta [Homo sapiens]
Length = 318
Score = 37.4 bits (85), Expect = 0.013
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 21 QVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGL--- 77
+++K G+ G + ++LL IL ++NL +T+ I V+ +G ++ E GL
Sbjct: 51 RLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRF 110
Query: 78 KLEGDSEFLQPLYAKEIQSR 97
K D + PLY + R
Sbjct: 111 KQVSDMGVIHPLYKSTVGGR 130
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 31.2 bits (69), Expect = 0.92
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 110 VTVNILNDQTKVLTQLITGPKAVEAYGKK-----FEVKTVSGKLLFSADNNEVVVGAERL 164
V VN+L + K+L + T PK V + KK F +T+ ++ ++ N E +V A L
Sbjct: 46 VPVNLLLEVKKLLNAINTLPKGVVPHIKKFLQEDFSFQTMQREVAANSQNGEEIVPALTL 105
Query: 165 RVLGAEGTVFPKSIETPNVRA 185
R L + ++I+ N A
Sbjct: 106 RFLITQLEAALRNIQAGNYTA 126
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 35 LYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEI 94
LYF +L + L N + LK N I MG++++T+ GL G LY I
Sbjct: 614 LYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHI 673
Query: 95 Q 95
+
Sbjct: 674 E 674
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 35 LYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEI 94
+YF +L + L N + LK N I MG++++T+ GL G LY I
Sbjct: 476 MYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKMGLMSLTTNLYEGHI 535
Query: 95 Q 95
+
Sbjct: 536 E 536
>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
sapiens]
Length = 706
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNI 114
M T+ G+ + + KGL L+GD + L KE +P AL K A N+ + +
Sbjct: 85 MTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKE---KPTTALLDKVADNLAIQL 136
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNI 114
M T+ G+ + + KGL L+GD + L KE +P AL K A N+ + +
Sbjct: 85 MTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKE---KPTTALLDKVADNLAIQL 136
>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
sapiens]
Length = 690
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNI 114
M T+ G+ + + KGL L+GD + L KE +P AL K A N+ + +
Sbjct: 85 MTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKE---KPTTALLDKVADNLAIQL 136
>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
sapiens]
Length = 702
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNI 114
M T+ G+ + + KGL L+GD + L KE +P AL K A N+ + +
Sbjct: 85 MTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKE---KPTTALLDKVADNLAIQL 136
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 7.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 60 MNFTIDGMGNLRITEKGLKLEGDSEFLQPLYAKEIQSRPGNALYFKSARNVTVNI 114
M T+ G+ + + KGL L+GD + L KE +P AL K A N+ + +
Sbjct: 85 MTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKE---KPTTALLDKVADNLAIQL 136
>gi|15619015 protein kinase, cAMP-dependent, catalytic, gamma [Homo
sapiens]
Length = 351
Score = 28.1 bits (61), Expect = 7.8
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 16 GSVGPQVYKVGIYGWRKRCLYFFVLLLMILILVNLAMTIWILKVMNFTIDGMGNLRITEK 75
G + ++ +VG + C Y ++L + L +L + LK N ID G L++T+
Sbjct: 127 GEMFSRLQRVGRFSEPHACFYAAQVVLAVQYLHSLDLIHRDLKPENLLIDQQGYLQVTDF 186
Query: 76 GL---------KLEGDSEFLQP 88
G L G E+L P
Sbjct: 187 GFAKRVKGRTWTLCGTPEYLAP 208
>gi|199560800 kinesin family member 9 isoform 2 [Homo sapiens]
Length = 790
Score = 28.1 bits (61), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 194 ESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRD--EKDRSSKS 244
+ P SL + +N + + +T +T+L SKDG+V+D +DR + S
Sbjct: 501 KEPLSSLARKEGASSPVNGKDLDYVSTSKTQLVPSSKDGDVKDMLSRDRETSS 553
>gi|199560791 kinesin family member 9 isoform 2 [Homo sapiens]
Length = 790
Score = 28.1 bits (61), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 194 ESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVRD--EKDRSSKS 244
+ P SL + +N + + +T +T+L SKDG+V+D +DR + S
Sbjct: 501 KEPLSSLARKEGASSPVNGKDLDYVSTSKTQLVPSSKDGDVKDMLSRDRETSS 553
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 28.1 bits (61), Expect = 7.8
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 176 KSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVR 235
K I++ N +++++ E P + L + + N E GNME R + +E + E
Sbjct: 335 KQIDSINGTLPSYQKMQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQALMEQQQREAE 394
Query: 236 DEKDRSSKSY 245
+ + + +
Sbjct: 395 RKAQKEKEEW 404
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 28.1 bits (61), Expect = 7.8
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 176 KSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVR 235
K I++ N +++++ E P + L + + N E GNME R + +E + E
Sbjct: 335 KQIDSINGTLPSYQKMQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQALMEQQQREAE 394
Query: 236 DEKDRSSKSY 245
+ + + +
Sbjct: 395 RKAQKEKEEW 404
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 28.1 bits (61), Expect = 7.8
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 176 KSIETPNVRADPFKELRLESPTRSLVMEAPKGVEINAEAGNMEATCRTELRLESKDGEVR 235
K I++ N +++++ E P + L + + N E GNME R + +E + E
Sbjct: 335 KQIDSINGTLPSYQKMQEEEPQKKLPVTFEDKRKANYERGNMELEKRRQALMEQQQREAE 394
Query: 236 DEKDRSSKSY 245
+ + + +
Sbjct: 395 RKAQKEKEEW 404
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,058,516
Number of Sequences: 37866
Number of extensions: 347514
Number of successful extensions: 923
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 22
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.