Guide to the Human Genome
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Name: SGCG Sequence: fasta or formatted (291aa) NCBI GI: 4557847
Description:

gamma sarcoglycan

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         13           1
 C cysteine            2.7          8           1
 D aspartate           4.1         12           1
 E glutamate           7.2         21           1
 F phenylalanine       3.1          9           1
 G glycine             7.6         22           1
 H histidine           2.7          8           1
 I isoleucine          5.2         15           2
 K lysine              4.5         13           1
 L leucine            12.4         36           4
 M methionine          2.4          7           1
 N asparagine          2.7          8           1
 P proline             4.5         13           1
 Q glutamine           4.8         14           2
 R arginine            4.5         13           1
 S serine              7.6         22           2
 T threonine           5.8         17           2
 V valine              9.6         28           3
 W tryptophan          1.4          4           1
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma sarcoglycan 
SGCZ                  0.559   sarcoglycan zeta 
SGCD                  0.500   delta-sarcoglycan isoform 3 
SGCD                  0.500   delta-sarcoglycan isoform 1 
SGCD                  0.397   delta-sarcoglycan isoform 2 
SGCB                  0.052   sarcoglycan, beta 
BRD4                  0.016   bromodomain-containing protein 4 isoform long 
MFF                   0.016   mitochondrial fission factor 
MRGPRD                0.011   MAS-related GPR, member D 
USP47                 0.009   ubiquitin specific protease 47 
NUP210L               0.005   nucleoporin 210kDa-like isoform 2 
NUP210L               0.005   nucleoporin 210kDa-like isoform 1 
NAB2                  0.005   NGFI-A binding protein 2 
ZNF524                0.005   zinc finger protein 524 
GPR98                 0.005   G protein-coupled receptor 98 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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