Guide to the Human Genome
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Name: LOC100130710 Sequence: fasta or formatted (442aa) NCBI GI: 239757385
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {442aa} PREDICTED: hypothetical protein
alt prot {238aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         30           2
 C cysteine            2.3         10           1
 D aspartate           1.6          7           1
 E glutamate           3.4         15           1
 F phenylalanine      10.6         47           2
 G glycine             4.3         19           1
 H histidine           1.4          6           1
 I isoleucine          4.3         19           2
 K lysine              4.8         21           2
 L leucine            10.4         46           2
 M methionine          2.0          9           1
 N asparagine          4.5         20           1
 P proline             5.2         23           1
 Q glutamine           1.4          6           1
 R arginine            6.1         27           1
 S serine             10.9         48           2
 T threonine           7.7         34           1
 V valine             10.2         45           2
 W tryptophan          0.7          3           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130710          1.000   PREDICTED: hypothetical protein 
LOC100130710          0.481   PREDICTED: hypothetical protein 
LOC100129081          0.248   PREDICTED: hypothetical protein 
LOC100129081          0.248   PREDICTED: hypothetical protein 
LOC100129081          0.248   PREDICTED: hypothetical protein 
LOC100290090          0.235   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.235   PREDICTED: hypothetical protein XP_002343740 
LOC100291846          0.222   PREDICTED: hypothetical protein XP_002345270 
LOC100294029          0.200   PREDICTED: hypothetical protein 
LOC100291794          0.187   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.187   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.187   PREDICTED: hypothetical protein XP_002343741 
LOC100291582          0.082   PREDICTED: hypothetical protein XP_002345268 
LOC100290322          0.082   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.082   PREDICTED: hypothetical protein XP_002343742 
LOC100130667          0.038   PREDICTED: hypothetical protein 
LOC100130667          0.038   PREDICTED: hypothetical protein 
LOC100130667          0.038   PREDICTED: hypothetical protein 
LOC100293166          0.012   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.012   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.012   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.012   PREDICTED: similar to ribosomal protein L36a 
ADNP2                 0.011   ADNP homeobox 2 
PITX1                 0.009   paired-like homeodomain transcription factor 1 [Hom...
LRRC19                0.009   leucine rich repeat containing 19 
VN1R4                 0.007   vomeronasal 1 receptor 4 
ZNF10                 0.006   zinc finger protein 10 
LOC100128471          0.006   PREDICTED: hypothetical protein 
LOC100128471          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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