Guide to the Human Genome
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Name: LRRC19 Sequence: fasta or formatted (370aa) NCBI GI: 12597641
Description:

leucine rich repeat containing 19

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          7           1
 C cysteine            2.4          9           1
 D aspartate           3.8         14           3
 E glutamate           7.0         26           2
 F phenylalanine       4.6         17           1
 G glycine             3.5         13           1
 H histidine           3.0         11           2
 I isoleucine          8.6         32           1
 K lysine              4.6         17           2
 L leucine            14.3         53           2
 M methionine          0.8          3           1
 N asparagine          9.5         35           2
 P proline             3.5         13           2
 Q glutamine           4.1         15           2
 R arginine            1.6          6           1
 S serine              8.9         33           3
 T threonine           7.0         26           2
 V valine              5.4         20           3
 W tryptophan          1.4          5           1
 Y tyrosine            4.1         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 19 
GPR125                0.085   G protein-coupled receptor 125 
GPR124                0.079   G protein-coupled receptor 124 
SLITRK6               0.077   slit and trk like 6 
ELFN2                 0.076   leucine rich repeat containing 62 
LRRC15                0.074   leucine rich repeat containing 15 isoform a 
LRRC15                0.074   leucine rich repeat containing 15 isoform b 
PXDN                  0.074   peroxidasin 
SLIT1                 0.067   slit homolog 1 
IGSF10                0.067   immunoglobulin superfamily, member 10 
SLITRK3               0.065   slit and trk like 3 protein 
SLITRK1               0.065   slit and trk like 1 protein 
SLITRK5               0.063   SLIT and NTRK-like family, member 5 
LRTM1                 0.063   leucine-rich repeats and transmembrane domains 1 [Ho...
SLITRK4               0.062   slit and trk like 4 protein 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
SLITRK2               0.061   SLIT and NTRK-like family, member 2 
LRRC70                0.058   synleurin 
SLIT2                 0.058   slit homolog 2 
AMIGO2                0.056   adhesion molecule with Ig-like domain 2 
AMIGO2                0.056   adhesion molecule with Ig-like domain 2 
GP1BA                 0.055   platelet glycoprotein Ib alpha polypeptide precurso...
SLIT3                 0.055   slit homolog 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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