Guide to the Human Genome
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Name: VN1R4 Sequence: fasta or formatted (301aa) NCBI GI: 71361647
Description:

vomeronasal 1 receptor 4

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         16           2
 C cysteine            5.0         15           1
 D aspartate           2.0          6           1
 E glutamate           1.0          3           1
 F phenylalanine       5.3         16           1
 G glycine             5.6         17           3
 H histidine           2.3          7           1
 I isoleucine          4.7         14           2
 K lysine              4.0         12           1
 L leucine            13.6         41           2
 M methionine          3.7         11           1
 N asparagine          4.3         13           2
 P proline             3.3         10           1
 Q glutamine           2.7          8           1
 R arginine            5.6         17           1
 S serine             10.3         31           3
 T threonine           5.3         16           2
 V valine             11.0         33           2
 W tryptophan          1.7          5           1
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vomeronasal 1 receptor 4 
VN1R2                 0.533   vomeronasal 1 receptor 2 
VN1R1                 0.366   vomeronasal 1 receptor 1 
LOC100129315          0.128   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.128   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.128   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
VN1R5                 0.079   vomeronasal 1 receptor 5 
LOC100294489          0.065   PREDICTED: similar to hCG1817096 
FKSG83                0.062   FKSG83 
LOC100131688          0.058   PREDICTED: similar to hCG2041551 
LOC100131688          0.058   PREDICTED: similar to hCG2041551 
LOC100133928          0.050   PREDICTED: similar to vomeronasal 1 receptor, A5 [H...
LOC100129126          0.036   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.036   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.036   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.036   PREDICTED: hypothetical LOC100129126 
EDNRB                 0.024   endothelin receptor type B isoform 1 precursor [Hom...
EDNRB                 0.024   endothelin receptor type B isoform 1 precursor 
EDNRB                 0.024   endothelin receptor type B isoform 2 precursor 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1B1 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.021   opioid receptor, mu 1 isoform MOR-1X 
TAS2R41               0.014   taste receptor, type 2, member 41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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