Guide to the Human Genome
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Name: LOC100291582 Sequence: fasta or formatted (247aa) NCBI GI: 239757383
Description:

PREDICTED: hypothetical protein XP_002345268

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         13           2
 C cysteine            1.6          4           1
 D aspartate           1.2          3           1
 E glutamate           2.0          5           1
 F phenylalanine       6.5         16           1
 G glycine             5.7         14           3
 H histidine           1.6          4           1
 I isoleucine          3.2          8           1
 K lysine              5.3         13           1
 L leucine             9.3         23           2
 M methionine          1.6          4           1
 N asparagine          2.8          7           1
 P proline             8.5         21           3
 Q glutamine           3.2          8           1
 R arginine            8.1         20           2
 S serine             14.2         35           2
 T threonine           8.5         21           2
 V valine              8.9         22           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345268 
LOC100290322          0.938   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.938   PREDICTED: hypothetical protein XP_002343742 
LOC100294029          0.197   PREDICTED: hypothetical protein 
LOC100130710          0.148   PREDICTED: hypothetical protein 
LOC100130710          0.148   PREDICTED: hypothetical protein 
LOC100129081          0.144   PREDICTED: hypothetical protein 
LOC100129081          0.144   PREDICTED: hypothetical protein 
LOC100129081          0.144   PREDICTED: hypothetical protein 
LOC100291846          0.142   PREDICTED: hypothetical protein XP_002345270 
LOC100291794          0.139   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.139   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.139   PREDICTED: hypothetical protein XP_002343741 
LOC100130710          0.135   PREDICTED: hypothetical protein 
LOC100290090          0.127   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.127   PREDICTED: hypothetical protein XP_002343740 
MUC7                  0.026   mucin 7, secreted precursor 
MUC7                  0.026   mucin 7, secreted precursor 
MUC7                  0.026   mucin 7, secreted precursor 
FAM101B               0.017   hypothetical protein LOC359845 
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent r...
LOC645602             0.017   PREDICTED: hypothetical protein 
LOC645602             0.017   PREDICTED: hypothetical protein 
LOC645602             0.017   PREDICTED: hypothetical protein 
ANO8                  0.015   anoctamin 8 
MAPT                  0.015   microtubule-associated protein tau isoform 2 
MAPT                  0.015   microtubule-associated protein tau isoform 4 
MAPT                  0.015   microtubule-associated protein tau isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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