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Search of human proteins with 239757046
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
(737 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens] 1524 0.0
gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens] 1494 0.0
gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens] 1494 0.0
gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G (... 100 8e-21
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 55 2e-07
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 38 0.039
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 38 0.039
gi|150170670 piccolo isoform 2 [Homo sapiens] 36 0.11
gi|150378539 piccolo isoform 1 [Homo sapiens] 36 0.11
gi|148806881 hypothetical protein LOC57608 [Homo sapiens] 35 0.19
gi|157311635 FAM83H [Homo sapiens] 34 0.43
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 34 0.56
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 33 0.73
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 33 0.73
gi|28872814 semaphorin 4G [Homo sapiens] 33 0.73
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 33 0.95
gi|239755842 PREDICTED: hypothetical protein [Homo sapiens] 32 1.6
gi|73476377 LBXCOR1 homolog [Homo sapiens] 32 1.6
gi|56676335 RAP1 interacting factor 1 [Homo sapiens] 32 1.6
gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens] 32 1.6
gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens] 32 1.6
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 32 2.1
gi|14211933 spermatogenesis associated 22 [Homo sapiens] 32 2.1
gi|13128862 histone deacetylase 3 [Homo sapiens] 32 2.8
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 32 2.8
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 32 2.8
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 2.8
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 2.8
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 32 2.8
gi|27363484 E74-like factor 1 (ets domain transcription factor) ... 31 3.6
>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 737
Score = 1524 bits (3946), Expect = 0.0
Identities = 737/737 (100%), Positives = 737/737 (100%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTP 180
SSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTP
Sbjct: 121 SSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTP 180
Query: 181 TGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHD 240
TGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHD
Sbjct: 181 TGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHD 240
Query: 241 IRPRPSQRTLTRLPARDCQPCLWVPSGGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYK 300
IRPRPSQRTLTRLPARDCQPCLWVPSGGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYK
Sbjct: 241 IRPRPSQRTLTRLPARDCQPCLWVPSGGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYK 300
Query: 301 RKAAPVPGLLRFKTAPTAAEITGHAKADNISVFVQCVFEESGQDSKGVLEILMLERWNFI 360
RKAAPVPGLLRFKTAPTAAEITGHAKADNISVFVQCVFEESGQDSKGVLEILMLERWNFI
Sbjct: 301 RKAAPVPGLLRFKTAPTAAEITGHAKADNISVFVQCVFEESGQDSKGVLEILMLERWNFI 360
Query: 361 LAKDSGDRRPIKPEDMDKYAKPATTGLGHKNKKVTHKFSPPKDEDNTLIRAERILSREEE 420
LAKDSGDRRPIKPEDMDKYAKPATTGLGHKNKKVTHKFSPPKDEDNTLIRAERILSREEE
Sbjct: 361 LAKDSGDRRPIKPEDMDKYAKPATTGLGHKNKKVTHKFSPPKDEDNTLIRAERILSREEE 420
Query: 421 SQGLTVKITGPGSGWSREDYKSVPLKTEDEEYMLALKQELRETMKRMPYFIETPEERQDI 480
SQGLTVKITGPGSGWSREDYKSVPLKTEDEEYMLALKQELRETMKRMPYFIETPEERQDI
Sbjct: 421 SQGLTVKITGPGSGWSREDYKSVPLKTEDEEYMLALKQELRETMKRMPYFIETPEERQDI 480
Query: 481 ERYSKRYMKVLWPQYWKMQLMTISGYRGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWP 540
ERYSKRYMKVLWPQYWKMQLMTISGYRGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWP
Sbjct: 481 ERYSKRYMKVLWPQYWKMQLMTISGYRGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWP 540
Query: 541 SVGPCASPNGPAGEFSASATAAIGKKASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKS 600
SVGPCASPNGPAGEFSASATAAIGKKASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKS
Sbjct: 541 SVGPCASPNGPAGEFSASATAAIGKKASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKS 600
Query: 601 GFGYNQEVDGDDTGEGGEGPCASACPNRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVV 660
GFGYNQEVDGDDTGEGGEGPCASACPNRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVV
Sbjct: 601 GFGYNQEVDGDDTGEGGEGPCASACPNRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVV 660
Query: 661 HLGTHMKHIQDLPLGKKEKSTYLLAPSRHWKHVPEDDEDLTIESALHLSPALKHCHPCHT 720
HLGTHMKHIQDLPLGKKEKSTYLLAPSRHWKHVPEDDEDLTIESALHLSPALKHCHPCHT
Sbjct: 661 HLGTHMKHIQDLPLGKKEKSTYLLAPSRHWKHVPEDDEDLTIESALHLSPALKHCHPCHT 720
Query: 721 LPGSIALPYGACCCQGE 737
LPGSIALPYGACCCQGE
Sbjct: 721 LPGSIALPYGACCCQGE 737
>gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 1494 bits (3868), Expect = 0.0
Identities = 733/771 (95%), Positives = 733/771 (95%), Gaps = 34/771 (4%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTAR----------------------------------RFKGTAPAEARGP 146
SSSFSNFQEKTAR FKGTAPAEARGP
Sbjct: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
Query: 147 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 206
GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD
Sbjct: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
Query: 207 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 266
LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS
Sbjct: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
Query: 267 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 326
GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK
Sbjct: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
Query: 327 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 386
ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG
Sbjct: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
Query: 387 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 446
LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK
Sbjct: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
Query: 447 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 506
TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY
Sbjct: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
Query: 507 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 566
RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK
Sbjct: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
Query: 567 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 626
ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP
Sbjct: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
Query: 627 NRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 686
NRSQR ELKPRPL PEVPDDHYGTA PMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP
Sbjct: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
Query: 687 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 737
SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE
Sbjct: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
>gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 1494 bits (3868), Expect = 0.0
Identities = 733/771 (95%), Positives = 733/771 (95%), Gaps = 34/771 (4%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTAR----------------------------------RFKGTAPAEARGP 146
SSSFSNFQEKTAR FKGTAPAEARGP
Sbjct: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
Query: 147 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 206
GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD
Sbjct: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
Query: 207 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 266
LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS
Sbjct: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
Query: 267 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 326
GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK
Sbjct: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
Query: 327 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 386
ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG
Sbjct: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
Query: 387 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 446
LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK
Sbjct: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
Query: 447 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 506
TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY
Sbjct: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
Query: 507 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 566
RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK
Sbjct: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
Query: 567 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 626
ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP
Sbjct: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
Query: 627 NRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 686
NRSQR ELKPRPL PEVPDDHYGTA PMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP
Sbjct: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
Query: 687 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 737
SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE
Sbjct: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
>gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) [Homo sapiens]
Length = 223
Score = 99.8 bits (247), Expect = 8e-21
Identities = 52/63 (82%), Positives = 53/63 (84%), Gaps = 4/63 (6%)
Query: 439 DYKSVPLKT-EDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVL---WPQ 494
DYK VPLKT E EEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKV W
Sbjct: 42 DYKPVPLKTGEGEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVYKEEWIP 101
Query: 495 YWK 497
W+
Sbjct: 102 DWR 104
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 439 DYKSVPLKTEDE-EYMLALKQELRETMKRMPYFIETPEERQDIERYSKRY 487
+++ VPL + +E EY+LALKQELR M+++PYFI ++D+ERYS +Y
Sbjct: 45 EFRPVPLPSGEEGEYVLALKQELRGAMRQLPYFIRPAVPKRDVERYSDKY 94
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 37.7 bits (86), Expect = 0.039
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 376 MDKYAKPATTGLGHKNKKV--THKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGS 433
+D + P + G GH +V T + +ED + E EE+ + V+ G G+
Sbjct: 24 LDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREE---EEEDGEEEEVEAVGAGA 80
Query: 434 GWSR----EDYKSVPLKT--EDEEYMLALKQELRETMKRMPYFIETPEERQDIERY 483
GW EDY+ + E+EE + R + M Y E +E +D++ Y
Sbjct: 81 GWDTPMRDEDYEGDMEEEVEEEEEGVFWTSGMSRSSWDNMDYVWEEEDEEEDLDYY 136
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 37.7 bits (86), Expect = 0.039
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 376 MDKYAKPATTGLGHKNKKV--THKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGS 433
+D + P + G GH +V T + +ED + E EE+ + V+ G G+
Sbjct: 24 LDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREE---EEEDGEEEEVEAVGAGA 80
Query: 434 GWSR----EDYKSVPLKT--EDEEYMLALKQELRETMKRMPYFIETPEERQDIERY 483
GW EDY+ + E+EE + R + M Y E +E +D++ Y
Sbjct: 81 GWDTPMRDEDYEGDMEEEVEEEEEGVFWTSGMSRSSWDNMDYVWEEEDEEEDLDYY 136
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 36.2 bits (82), Expect = 0.11
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 43 PSKAPASQDDLPRCFYLAALDSSTPPMKNRAKPPDFSEPL---SQLPDLTAARI-FESCM 98
P + P QD P+ SS P K +++PP +P+ +Q P A++ +
Sbjct: 225 PGRDPLQQDGTPKSI------SSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDA 278
Query: 99 SDTSGKDCTLLRSHREVLDPSLSS-SFSNFQEKTARRFKGTAPAEARGPGG-----RRFS 152
S K ++R E + PSL S S Q+ T + P + G + S
Sbjct: 279 SRPQTKQADIVRG--ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPS 336
Query: 153 GLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPI 185
GL P A +P PP Q G+ P P+
Sbjct: 337 GLTKPLAQQPGTVKPPVQP---PGTTKPPAQPL 366
Score = 30.0 bits (66), Expect = 8.0
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 77 DFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSSSFSNFQEKTARRFK 136
D+SE DLT+ R+ + D S K R+V+ + S Q TAR
Sbjct: 3014 DYSEGTDTAVDLTSGRVTTGEVMDYSSKTTGPYPETRQVIS---GAGISTPQYSTARMTP 3070
Query: 137 GTAPAEARGPGGRRFSGLLTPSAARPDP 164
P G R +G++ S A P P
Sbjct: 3071 PPGPQYCVGSVLRSSNGVVYSSVATPTP 3098
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 36.2 bits (82), Expect = 0.11
Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 43 PSKAPASQDDLPRCFYLAALDSSTPPMKNRAKPPDFSEPL---SQLPDLTAARI-FESCM 98
P + P QD P+ SS P K +++PP +P+ +Q P A++ +
Sbjct: 225 PGRDPLQQDGTPKSI------SSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDA 278
Query: 99 SDTSGKDCTLLRSHREVLDPSLSS-SFSNFQEKTARRFKGTAPAEARGPGG-----RRFS 152
S K ++R E + PSL S S Q+ T + P + G + S
Sbjct: 279 SRPQTKQADIVRG--ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPS 336
Query: 153 GLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPI 185
GL P A +P PP Q G+ P P+
Sbjct: 337 GLTKPLAQQPGTVKPPVQP---PGTTKPPAQPL 366
Score = 30.0 bits (66), Expect = 8.0
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 77 DFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSSSFSNFQEKTARRFK 136
D+SE DLT+ R+ + D S K R+V+ + S Q TAR
Sbjct: 3014 DYSEGTDTAVDLTSGRVTTGEVMDYSSKTTGPYPETRQVIS---GAGISTPQYSTARMTP 3070
Query: 137 GTAPAEARGPGGRRFSGLLTPSAARPDP 164
P G R +G++ S A P P
Sbjct: 3071 PPGPQYCVGSVLRSSNGVVYSSVATPTP 3098
>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
Length = 1359
Score = 35.4 bits (80), Expect = 0.19
Identities = 74/366 (20%), Positives = 126/366 (34%), Gaps = 57/366 (15%)
Query: 109 LRSHREVLDPSLSSSFSNF-----QEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARP- 162
L+ HR L PS +S+FS Q T + + + G G P R
Sbjct: 750 LKGHRS-LSPSSNSAFSRTSLSVDQAPTPKAGRSQPCVDVHGLGAH-------PGPKREV 801
Query: 163 --DPPAPPAQAWDRRGS--VTPTGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGVCALEE 218
P P + G + P W+L+S++ + KE+ S + EE
Sbjct: 802 VKGEPTGPCNSKQLFGQFLLKPVSRRPWDLISQLESFNKELQEEEESSSSSSSSSSSSEE 861
Query: 219 GKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPSGGLSAGEPRRLL 278
+ E + + + + D+ R + + P QP +WVP +
Sbjct: 862 SEAE-----PQQENRAHCRQEDVGFRGNSPEMRVEP----QPRMWVPESPVC-------- 904
Query: 279 RQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTA--AEITGHAKADNISVFVQC 336
+S R + ++ + +Q + R P PG R + A G A+ + V
Sbjct: 905 -RSGRGESKSESWSEELQPGHPRAWPPSPGRFRVEEGGGAPFCSADGSTSAEKRHLEVSN 963
Query: 337 VFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTGLGHKNKKVTH 396
+E V ++ S D +P+ + PA ++ K+T
Sbjct: 964 GMDELAGSPFPVTR----------MSSRSSDAKPLPA------SYPAEPREPQESPKITS 1007
Query: 397 KFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLKTEDEEYMLAL 456
FS K + + S E GL + ++ G S D +SV L E+ L
Sbjct: 1008 AFSSVKPSEAV---PRKFDSGGERGAGLPLSLSNKNRGLSAPDLRSVGLTPGQEQGASEL 1064
Query: 457 KQELRE 462
+ L E
Sbjct: 1065 EGSLGE 1070
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 34.3 bits (77), Expect = 0.43
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 86 PDLTAAR---IFESCMSDTSG----KDCTLLRSHR-EVLDPSLSSSFSNFQEKTARRFK- 136
P LT AR +FE +G D TL R L P +R +
Sbjct: 462 PQLTPARPQGLFEKLRGGRAGFADPDDFTLGAGPRFPELGPDGHQRLDYVPSSASREVRH 521
Query: 137 GTAPAEARGPGGRRFSGLLTPS---------AARPDP-PAPPAQAWDRRGSVTPTGAPIW 186
G+ PA A GP G SG P+ AARP P PAP A+ R G G W
Sbjct: 522 GSDPAFAPGPRGLEPSGAPRPNLTQRFPCQAAARPGPDPAPEAEPERRGGPEGRAGLRRW 581
Query: 187 ELVSRVHGYQKE 198
L S + G E
Sbjct: 582 RLASYLSGCHGE 593
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 33.9 bits (76), Expect = 0.56
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 77 DFSEPLSQL-----PDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSSSFSNFQEKT 131
DF EP ++L P L +A S +S +S + D S S++
Sbjct: 923 DFGEPGARLSPPAPPLLASAASSSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLD 982
Query: 132 ARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAP 184
K P G GLL+P A+ P PP PP + S+ P P
Sbjct: 983 FSSPKSPKPGAPSGHPVGSLDGLLSPEASSPYPPLPPRPSASPSSSLQPPPPP 1035
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 33.5 bits (75), Expect = 0.73
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 11 PMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLAALDSSTP--- 67
P P P + F P D + P KAP + + + A + TP
Sbjct: 1393 PDPPPSQNKPATFRPPNREDTAQAAFYPQKSFPDKAPVNGTEQTQKTVTPAYNRFTPKPY 1452
Query: 68 -----PMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSS 122
P + + + P F+ L LP TA + S + TS K TL++SH P S
Sbjct: 1453 TSSARPFERKFESPKFNHNL--LPSETAHKPDLSSKTPTSPK--TLVKSHSLAQPPEFDS 1508
Query: 123 SFSNF 127
F
Sbjct: 1509 GVETF 1513
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 33.5 bits (75), Expect = 0.73
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 11 PMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLAALDSSTP--- 67
P P P + F P D + P KAP + + + A + TP
Sbjct: 1473 PDPPPSQNKPATFRPPNREDTAQAAFYPQKSFPDKAPVNGTEQTQKTVTPAYNRFTPKPY 1532
Query: 68 -----PMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSS 122
P + + + P F+ L LP TA + S + TS K TL++SH P S
Sbjct: 1533 TSSARPFERKFESPKFNHNL--LPSETAHKPDLSSKTPTSPK--TLVKSHSLAQPPEFDS 1588
Query: 123 SFSNF 127
F
Sbjct: 1589 GVETF 1593
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 33.5 bits (75), Expect = 0.73
Identities = 53/211 (25%), Positives = 79/211 (37%), Gaps = 29/211 (13%)
Query: 512 YGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGE----FSASATAAIGKKA 567
YG Y ++ L T L SY V AT P+ A+P A AA+G
Sbjct: 635 YGCYAEENGLRTL-LASYSLTVRPATPAPAPKAPATPGAQLAPDVRLLYVLAIAALGGLC 693
Query: 568 ---SMSLLAVSV-----------FSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDT 613
+ SLL V+ +S+G+ ++G +++ SG +E +GDD
Sbjct: 694 LILASSLLYVACLREGRRGRRRKYSLGRASRAGGSAVQLQTV----SGQCPGEEDEGDDE 749
Query: 614 GEGG-EGPCASACPNRSQRPELKPRPLHPEVPDDHYGTAHP-----MTHSGVVHLGTHMK 667
G GG EG C P P P P + A P M + V L
Sbjct: 750 GAGGLEGSCLQIIPGEGAPAPPPPPPPPPPAELTNGLVALPSRLRRMNGNSYVLLRQSNN 809
Query: 668 HIQDLPLGKKEKSTYLLAPSRHWKHVPEDDE 698
+ P E+ + +L +H + V + DE
Sbjct: 810 GVPAGPCSFAEELSRILEKRKHTQLVEQLDE 840
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 33.1 bits (74), Expect = 0.95
Identities = 43/197 (21%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 10 PPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAP--ASQDDLPRCFYLAALDSSTP 67
PP PSP+ + P + ++ + +P +P+ P S PR + + + P
Sbjct: 953 PPPPSPEILMQQFLGRPLVKESFFRPILTVPQMPAVCPGVVSATGQPRAPLMTGIAWALP 1012
Query: 68 PMKNRAKPPDF---SEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSSSF 124
A PP S+P + R+ + T + LR ++ SLS
Sbjct: 1013 APVGDAVPPSAGLRSDPSIMNWERITDRLKTAFPQQTRKELTDFLRKLKDAYGKSLSE-- 1070
Query: 125 SNFQEKTARRFKGTAPAEARGPGGRRFS-GLLTP--SAARPDPPAPPAQAWDRRGSVTPT 181
F E + + P +++ G + ++P S ++PD PP AW +T
Sbjct: 1071 LTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHSPSQPDAAQPPKPAW---RPLTSQ 1127
Query: 182 GAPIWELVSRVHGYQKE 198
G WE S ++E
Sbjct: 1128 GPATWEGASNPDEEEEE 1144
>gi|239755842 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 111 SHREVLDPSLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQ 170
S R++L SSS+ Q TA+ + A E R P RFS + + R A A
Sbjct: 80 SFRKLLLAESSSSYGRGQRLTAKAERNPADGEGRSPAAGRFSA--SRRSPRGKEKAEAAN 137
Query: 171 AWDRRGSVTPT 181
RR V PT
Sbjct: 138 PRSRRWRVPPT 148
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 32.3 bits (72), Expect = 1.6
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 534 TAATFWPSVGPCASPNGPAGEFSASATAAIGKKASMSLLAVSVFSIGQKPKSGPQEASPE 593
T FWP+ G P+ PA + A A AA A+ + A + S +P G + A
Sbjct: 443 TFPMFWPAAGSLPVPSYPAAQSQAKAVAA-AVAAAAAAAAAAAGSGAPEPLDGAEPAKES 501
Query: 594 SLTC---CKSGFGYNQEVDGDDTGEGGEGPCASACP 626
L C S +D D T E P A P
Sbjct: 502 GLGAEERCPSALS-RGPLDEDGTDEALPPPLAPLPP 536
>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
Length = 2472
Score = 32.3 bits (72), Expect = 1.6
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 40 PALPSKAPASQDDLPRCFYLAALDSSTPPMKN---RAKPPDFSEPLSQLPDLTAAR-IFE 95
P+L S + RC + ST +K R++ + S P++++ ++ A I++
Sbjct: 2153 PSLVSANDSPSGMQTRCVWSPLASPSTSILKRGLKRSQEDEISSPVNKVRRVSFADPIYQ 2212
Query: 96 SCMSDTSGKDCTLLRSHREVLDP---SLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFS 152
+ ++D + C+++RSH P S+ +S + + KG +R P +
Sbjct: 2213 AGLADDIDRRCSIVRSHSSNSSPIGKSVKTSPTTQSKHNTTSAKGFLSPGSRSPKFKSSK 2272
Query: 153 GLLTPSAARPDPPAP 167
L A+ P P
Sbjct: 2273 KCLISEMAKESIPCP 2287
>gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens]
Length = 201
Score = 32.3 bits (72), Expect = 1.6
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 154 LLTPSAARPDPPAPPA--QAWDRRGSVTPT----GAPIWELVSRVHGYQKE 198
++T +AA P PA PA +A + RG P API LV R+H Q E
Sbjct: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAE 51
>gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens]
Length = 179
Score = 32.3 bits (72), Expect = 1.6
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 154 LLTPSAARPDPPAPPA--QAWDRRGSVTPT----GAPIWELVSRVHGYQKE 198
++T +AA P PA PA +A + RG P API LV R+H Q E
Sbjct: 1 MITETAAEPTVPAVPAAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAE 51
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 32.0 bits (71), Expect = 2.1
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 120 LSSSFSNFQEK---TARRFKGTAPAEARGPGGRRFSG--LLTPSAARPD----PPAPPAQ 170
L+ S+ FQE+ T +P +ARGPGG G +LTP +A D PPAP Q
Sbjct: 38 LTGSWGPFQEEPQDTENAQSPGSPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQ 97
>gi|14211933 spermatogenesis associated 22 [Homo sapiens]
Length = 363
Score = 32.0 bits (71), Expect = 2.1
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 152 SGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRDLLSKL 211
SG+ TPS PP P AW+ +V P AP+ + V ++ + +R L S+
Sbjct: 41 SGISTPSDNYDFPPLPTDWAWE---AVNPELAPVMKTVD-----TGQIPHSASRPLRSQD 92
Query: 212 GV---CALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPSGG 268
V G+ + G ++G + +K + Q T L A D + V SG
Sbjct: 93 SVFNSIQSNTGRSQGGWSYRDGNKNTSLKTWNKNDFKPQCKRTNLVANDGKNSCPVSSGA 152
Query: 269 -----LSAGEPRRLLRQSVRE 284
L EP L R E
Sbjct: 153 QQQKQLRIPEPPNLSRNKETE 173
>gi|13128862 histone deacetylase 3 [Homo sapiens]
Length = 428
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 641 PEVPDDHYGTAHPM-------THSGVVHLGTHMKHI 669
P+V + HYG HPM THS V+H G + K I
Sbjct: 11 PDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMI 46
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.6 bits (70), Expect = 2.8
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 120 LSSSFSNFQEK---TARRFKGTAPAEARGPGGRRFSG--LLTPSAARPD----PPAPPAQ 170
L+ S+ FQE+ T P +ARGPGG G +LTP +A D PPAP Q
Sbjct: 38 LTGSWGPFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQ 97
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 31.6 bits (70), Expect = 2.8
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 130 KTARRFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTG 182
+ RR EA PG RFSGL ++P P P A RRG P G
Sbjct: 126 RAGRRAADGPGEEAPAPGRARFSGL-----SQPRGPQPRAAVRPRRGGALPRG 173
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 31.6 bits (70), Expect = 2.8
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 155 LTPSAARPDPPAPPAQAWD-RRGSVTPTGAPIWELVSRVHGY 195
L P A PDPPAPPA A D R I EL R GY
Sbjct: 1993 LAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSLGY 2034
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 31.6 bits (70), Expect = 2.8
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 155 LTPSAARPDPPAPPAQAWD-RRGSVTPTGAPIWELVSRVHGY 195
L P A PDPPAPPA A D R I EL R GY
Sbjct: 2009 LAPHHASPDPPAPPASASDPHREKTQSKPFSIQELELRSLGY 2050
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 31.6 bits (70), Expect = 2.8
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 10 PPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLAALDSSTPPM 69
P P Q S + PA A + S+ P+LP +AP D P +L + + PP
Sbjct: 747 PQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLG--DSP---HLPSPHPTRPPS 801
Query: 70 KNRAKPPDFSEPLSQLP 86
+ ++P S P S+ P
Sbjct: 802 RPPSRPQSVSRPPSEPP 818
>gi|27363484 E74-like factor 1 (ets domain transcription factor)
isoform a [Homo sapiens]
Length = 619
Score = 31.2 bits (69), Expect = 3.6
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 114 EVLDPSLSSSFSNFQEKTARRFKGTAPAEARGPGGRRFSGLLTP---SAARPDPPAPPAQ 170
E DPSLSSS ++ + +T+R ++P G + +L P AA+P P AQ
Sbjct: 309 ESSDPSLSSSATSNRNQTSRSRVSSSPGVKGGA-----TTVLKPGNSKAAKPKDPVEVAQ 363
Query: 171 AWDRRGSVTPTGAPI-WELVSRVHGYQ 196
+ +V PT +P +L VH Q
Sbjct: 364 PSEVLRTVQPTQSPYPTQLFRTVHVVQ 390
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,512,144
Number of Sequences: 37866
Number of extensions: 1885748
Number of successful extensions: 7565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 7506
Number of HSP's gapped (non-prelim): 106
length of query: 737
length of database: 18,247,518
effective HSP length: 110
effective length of query: 627
effective length of database: 14,082,258
effective search space: 8829575766
effective search space used: 8829575766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.