Guide to the Human Genome
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Name: LOC647055 Sequence: fasta or formatted (771aa) NCBI GI: 239751558
Description:

PREDICTED: similar to hCG1790759

Not currently referenced in the text

Other entries for this name:
alt mRNA {771aa} PREDICTED: similar to hCG1790759
alt prot {737aa} PREDICTED: similar to hCG1790759
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         67           2
 C cysteine            2.7         21           3
 D aspartate           4.7         36           2
 E glutamate           7.0         54           3
 F phenylalanine       2.9         22           1
 G glycine             7.3         56           2
 H histidine           2.9         22           1
 I isoleucine          2.7         21           1
 K lysine              6.5         50           2
 L leucine             9.2         71           2
 M methionine          2.3         18           1
 N asparagine          1.4         11           1
 P proline             9.1         70           2
 Q glutamine           3.8         29           2
 R arginine            6.4         49           2
 S serine              9.5         73           3
 T threonine           5.3         41           2
 V valine              4.2         32           2
 W tryptophan          1.2          9           1
 Y tyrosine            2.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1790759 
LOC647055             1.000   PREDICTED: similar to hCG1790759 
LOC647055             0.943   PREDICTED: similar to hCG1790759 
POLR3G                0.048   polymerase (RNA) III (DNA directed) polypeptide G (...
POLR3GL               0.019   polymerase (RNA) III (DNA directed) polypeptide G (3...
ZNF716                0.009   PREDICTED: zinc finger protein 716 
LOC100288901          0.008   PREDICTED: hypothetical protein XP_002342617 
TRIM41                0.008   tripartite motif-containing 41 isoform 2 
TRIM41                0.008   tripartite motif-containing 41 isoform 1 
KIAA1462              0.008   hypothetical protein LOC57608 
FLJ31945              0.008   PREDICTED: hypothetical protein 
LMTK3                 0.007   lemur tyrosine kinase 3 
WNK4                  0.006   WNK lysine deficient protein kinase 4 
HOXA13                0.006   homeobox A13 
PCLO                  0.006   piccolo isoform 2 
PCLO                  0.006   piccolo isoform 1 
HABP4                 0.006   hyaluronan binding protein 4 
FLJ37078              0.006   hypothetical protein LOC222183 
LOC100291533          0.006   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.006   PREDICTED: hypothetical protein XP_002342946 
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform c ...
SEMA4G                0.006   semaphorin 4G 
LOC100292122          0.006   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.006   PREDICTED: hypothetical protein XP_002344191 
HCN2                  0.006   hyperpolarization activated cyclic nucleotide-gated...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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