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Search of human proteins with 239755031
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755031 PREDICTED: hypothetical protein [Homo sapiens]
(68 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755031 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|239749536 PREDICTED: hypothetical protein XP_002347073 [Homo ... 130 2e-31
gi|239743686 PREDICTED: hypothetical protein XP_002342934 [Homo ... 129 6e-31
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|223671856 coiled-coil domain containing 85C [Homo sapiens] 33 0.049
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|28872761 myotubularin-related protein 1 [Homo sapiens] 33 0.063
gi|24497554 homeobox A13 [Homo sapiens] 31 0.18
gi|9966841 cell death regulator aven [Homo sapiens] 31 0.24
gi|13775236 scratch [Homo sapiens] 31 0.24
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 0.31
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 30 0.31
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 30 0.31
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 30 0.31
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 30 0.31
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 30 0.41
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 30 0.41
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 30 0.41
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 30 0.41
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 30 0.41
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 30 0.41
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 30 0.54
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 30 0.54
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|9789947 fibroblast growth factor 20 [Homo sapiens] 29 0.70
>gi|239755031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 68
Score = 130 bits (327), Expect = 2e-31
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT
Sbjct: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
Query: 61 SRAGDAAS 68
SRAGDAAS
Sbjct: 61 SRAGDAAS 68
>gi|239749536 PREDICTED: hypothetical protein XP_002347073 [Homo
sapiens]
Length = 68
Score = 130 bits (327), Expect = 2e-31
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT
Sbjct: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
Query: 61 SRAGDAAS 68
SRAGDAAS
Sbjct: 61 SRAGDAAS 68
>gi|239743686 PREDICTED: hypothetical protein XP_002342934 [Homo
sapiens]
Length = 68
Score = 129 bits (323), Expect = 6e-31
Identities = 67/68 (98%), Positives = 67/68 (98%)
Query: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
MVQEAALAAAVREGGGG GLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT
Sbjct: 1 MVQEAALAAAVREGGGGGGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLT 60
Query: 61 SRAGDAAS 68
SRAGDAAS
Sbjct: 61 SRAGDAAS 68
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 11 VREGGGGAGLEGRAG---RRAPL---AASGRAAAGAMGARARSLAGHGLLRR 56
VR GGGG G E R G R P+ A +G A AGA G A+S+ G G+ RR
Sbjct: 434 VRAGGGGTG-EVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERR 484
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNT 58
V+ A AA R GGGG G +A RR R AR R +A H RN+
Sbjct: 505 VERAQRAAEGRGGGGGGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGRNS 561
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 11 VREGGGGAGLEGRAG---RRAPL---AASGRAAAGAMGARARSLAGHGLLRR 56
VR GGGG G E R G R P+ A +G A AGA G A+S+ G G+ RR
Sbjct: 107 VRAGGGGTG-EVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERR 157
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNT 58
V+ A AA R GGGG G +A RR R AR R +A H RN+
Sbjct: 178 VERAQRAAEGRGGGGGGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGRNS 234
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 11 VREGGGGAGLEGRAG---RRAPL---AASGRAAAGAMGARARSLAGHGLLRR 56
VR GGGG G E R G R P+ A +G A AGA G A+S+ G G+ RR
Sbjct: 107 VRAGGGGTG-EVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERR 157
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNT 58
V+ A AA R GGGG G +A RR R AR R +A H RN+
Sbjct: 178 VERAQRAAEGRGGGGGGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGRNS 234
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 11 VREGGGGAGLEGRAG---RRAPL---AASGRAAAGAMGARARSLAGHGLLRR 56
VR GGGG G E R G R P+ A +G A AGA G A+S+ G G+ RR
Sbjct: 107 VRAGGGGTG-EVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERR 157
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNT 58
V+ A AA R GGGG G +A RR R AR R +A H RN+
Sbjct: 178 VERAQRAAEGRGGGGGGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGRNS 234
>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
Length = 419
Score = 33.1 bits (74), Expect = 0.049
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 5 AALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRRNTLTSRAG 64
AA AA GGGG G R+ + + SG + GA GA AR + G G + TS AG
Sbjct: 159 AATGAASGGGGGGGGAGSRSSIDSQASLSGPLSGGAPGAGARDV-GDG-----SSTSSAG 212
Query: 65 DAAS 68
S
Sbjct: 213 SGGS 216
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 4 EAALAAAVREGGGGAG--LEG-----------RAGRRA----PLAASGRAAAGAMGARAR 46
EA +A R GG AG L G RAGRR +AA+GR AGA G R
Sbjct: 821 EAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRR 880
Query: 47 SLAGHG 52
GHG
Sbjct: 881 VRHGHG 886
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 4 EAALAAAVREGGGGAG--LEG-----------RAGRRA----PLAASGRAAAGAMGARAR 46
EA +A R GG AG L G RAGRR +AA+GR AGA G R
Sbjct: 821 EAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRR 880
Query: 47 SLAGHG 52
GHG
Sbjct: 881 VRHGHG 886
>gi|28872761 myotubularin-related protein 1 [Homo sapiens]
Length = 665
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1 MVQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGA 40
M + AA AAA EGGGG G AG R P A+G A AG+
Sbjct: 1 MDRPAAAAAAGCEGGGGPN-PGPAGGRRPPRAAGGATAGS 39
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 AALAAAVREGGGGAGL----EGRAGRRAPLAASGRAAAGAMGARARSLAGH 51
AA AAA G GG G AG +AA+ AAA A + R+L H
Sbjct: 43 AAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAH 93
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 6 ALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLR 55
A AA R GGGG G +G GRR GR GA G R A G R
Sbjct: 31 AAAAVARGGGGGGGGDG-GGRRG--RGRGRGFRGARGGRGGGGAPRGSRR 77
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 14 GGGGAGLE-------GRAGRRAPLAASGRAAAGAMGARARSLAG 50
GGGGAG GR G RA RA GA GA R G
Sbjct: 151 GGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACG 194
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 5 AALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLR 55
A AAA G GAG+ G G A AAS +A+ + + + + +G LLR
Sbjct: 59 AVAAAAAAAGSSGAGVPG--GAAAASAASSSSASSSSSSSSSASSGPALLR 107
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHGLLRR--NTLTSRAGDAA 67
GGGGA G G ++ + ++ +G A ++S G G RR SR+G+ A
Sbjct: 725 GGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKA 780
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 8 AAAVREGGGGA------GLEGRAGRRAPLAASGRAAA--GAMGARARSLAGHG 52
AA+ GGGGA G + R+G +A A +AAA G R +S G G
Sbjct: 754 AASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKAAAAGGKKPPRVKSRGGRG 806
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 12 REGGGGAGLEGRAGRRAPLAASGRAAAGAMGA 43
R+ GGG G GR GR A G AAA + A
Sbjct: 254 RQRGGGRGGGGRGGREAAATVHGNAAASSSAA 285
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 12 REGGGGAGLEGRAGRRAPLAASGRAAAGAMGA 43
R+ GGG G GR GR A G AAA + A
Sbjct: 272 RQRGGGRGGGGRGGREAAATVHGNAAASSSAA 303
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 12 REGGGGAGLEGRAGRRAPLAASGRAAAGAMGA 43
R+ GGG G GR GR A G AAA + A
Sbjct: 272 RQRGGGRGGGGRGGREAAATVHGNAAASSSAA 303
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 4 EAAL---AAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAG 50
EAAL A+RE G G GR GRR P G AA A+G R + G
Sbjct: 10 EAALLLAGLALRELEPGCGSPGR-GRRGPRPGPGDEAAPALGRRGKGSGG 58
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 13 EGGGGAGLEGRAGRRAPLAASGRAAAGA 40
+GGGG G G RAP A RA GA
Sbjct: 31 DGGGGGGARAPEGVRAPAAGQPRATKGA 58
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 12 REGGGGAGLEGRAGRRAPLAASGRAAAGAMGA 43
R GGGGAG G +G AP + S ++A ++G+
Sbjct: 32 RAGGGGAGGPGASGPAAPSSPSSPSSARSVGS 63
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 2 VQEAALAAAVRE--GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHG 52
V AA A VR GGGG G GR +A AA+ AAA AR AG G
Sbjct: 28 VLRAAGAGPVRSPGGGGGGGGGGRTLAQAAGAAAVPAAAVPRARAARRAAGSG 80
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAA----GAMGARARSLAGHGLL 54
GGGG G AG A AA+ AAA G G S AG+G+L
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVL 310
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM 41
V AA AAA GGGG G G + + +S R G M
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGM 320
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G A +G A AGA+ A A + A
Sbjct: 256 GGGGGGSGGGGGGGG--AGAGGAGAGAVAAAAAAAA 289
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHG 52
GGGG+G G G A +G A A A A + AG G
Sbjct: 258 GGGGSG-GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 5 AALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM----GARARSLA 49
AA AAA GGGG G G + L++ + G M G A SL+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS 333
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G G A AG GA A + A
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAA 284
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAA----GAMGARARSLAGHGLL 54
GGGG G AG A AA+ AAA G G S AG+G+L
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVL 310
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM 41
V AA AAA GGGG G G + + +S R G M
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGM 320
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G A +G A AGA+ A A + A
Sbjct: 256 GGGGGGSGGGGGGGG--AGAGGAGAGAVAAAAAAAA 289
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHG 52
GGGG+G G G A +G A A A A + AG G
Sbjct: 258 GGGGSG-GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 5 AALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM----GARARSLA 49
AA AAA GGGG G G + L++ + G M G A SL+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS 333
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G G A AG GA A + A
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAA 284
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAA----GAMGARARSLAGHGLL 54
GGGG G AG A AA+ AAA G G S AG+G+L
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVL 310
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 2 VQEAALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM 41
V AA AAA GGGG G G + + +S R G M
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGM 320
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G A +G A AGA+ A A + A
Sbjct: 256 GGGGGGSGGGGGGGG--AGAGGAGAGAVAAAAAAAA 289
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHG 52
GGGG+G G G A +G A A A A + AG G
Sbjct: 258 GGGGSG-GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGG 295
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 5 AALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAM----GARARSLA 49
AA AAA GGGG G G + L++ + G M G A SL+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLS 333
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGG G G G G A AG GA A + A
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAA 284
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 6 ALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA----GHGLLRRNTLTS 61
A AA V G A RA RAPLAA A ARS A GHG RR +T
Sbjct: 239 APAARVVGGEAAATAAARARPRAPLAAGSPVPVRPQDAAARSAAGMQPGHG--RRPPVTC 296
Query: 62 R 62
R
Sbjct: 297 R 297
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLAGHG 52
GGGG G + A S AAA A A A + AG G
Sbjct: 149 GGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAAAAGAG 187
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 14 GGGGAGLEGRAGRRAPLAASGRAAAGAMGARARSLA 49
GGGGAG G G + AA+ AA A A A + A
Sbjct: 143 GGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAA 178
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 6 ALAAAVREGGGGAGLEGRAGRRAPLAASGRAAAGAMGARA-RSLAGHGLLRRNTLTSRAG 64
+L AA GA RAGRR A +GR+A A G A + G G R + S G
Sbjct: 135 SLPAAQFAAASGAA---RAGRRRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVG 191
Query: 65 DAA 67
A
Sbjct: 192 GKA 194
>gi|9789947 fibroblast growth factor 20 [Homo sapiens]
Length = 211
Score = 29.3 bits (64), Expect = 0.70
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 7 LAAAVREGGGGAGLEGR------------AGRRAPL-----AASGRAAAGAMGARARSLA 49
+A GG GLEG AG R PL +A+ R+A G GA A+
Sbjct: 1 MAPLAEVGGFLGGLEGLGQQVGSHFLLPPAGERPPLLGERRSAAERSARGGPGA-AQLAH 59
Query: 50 GHGLLRRNTLTSRAG 64
HG+LRR L R G
Sbjct: 60 LHGILRRRQLYCRTG 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,187,981
Number of Sequences: 37866
Number of extensions: 84597
Number of successful extensions: 1679
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 356
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.