Guide to the Human Genome
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Name: LOC100129463 Sequence: fasta or formatted (801aa) NCBI GI: 239508753
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {801aa} PREDICTED: hypothetical protein
alt prot {1128aa} PREDICTED: hypothetical protein
alt mRNA {801aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         73           2
 C cysteine            3.2         26           2
 D aspartate           2.4         19           1
 E glutamate           7.2         58           2
 F phenylalanine       2.4         19           1
 G glycine            11.7         94           7
 H histidine           3.1         25           4
 I isoleucine          1.6         13           1
 K lysine              2.1         17           1
 L leucine             8.0         64           3
 M methionine          1.1          9           1
 N asparagine          1.9         15           1
 P proline            10.1         81           4
 Q glutamine           5.1         41           2
 R arginine           11.4         91           2
 S serine              7.2         58           2
 T threonine           3.1         25           1
 V valine              6.6         53           2
 W tryptophan          2.2         18           1
 Y tyrosine            0.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129463          1.000   PREDICTED: hypothetical protein 
LOC100129463          1.000   PREDICTED: hypothetical protein 
LOC100129463          0.942   PREDICTED: hypothetical protein 
FUS                   0.018   fusion (involved in t(12;16) in malignant liposarcoma...
LOC100291596          0.016   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.016   PREDICTED: hypothetical protein XP_002343259 
LOC728767             0.016   PREDICTED: hypothetical protein 
LOC728767             0.016   PREDICTED: hypothetical protein 
LOC100292370          0.015   PREDICTED: hypothetical protein 
LOC338758             0.015   PREDICTED: hypothetical protein 
LOC338758             0.015   PREDICTED: hypothetical protein 
IRS4                  0.015   insulin receptor substrate 4 
LOC338758             0.015   PREDICTED: hypothetical protein 
FAM98B                0.015   family with sequence similarity 98, member B isofor...
LOC100292035          0.014   PREDICTED: hypothetical protein XP_002345623 
COL2A1                0.013   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.013   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100288068          0.013   PREDICTED: hypothetical protein 
CDC2L5                0.013   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.013   cell division cycle 2-like 5 isoform 2 
PPP1R10               0.013   protein phosphatase 1, regulatory subunit 10 
LOC100128960          0.013   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.013   PREDICTED: similar to Putative paraneoplastic antig...
LOC100291533          0.013   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.013   PREDICTED: hypothetical protein XP_002342946 
POU3F2                0.013   POU domain, class 3, transcription factor 2 
TLX1                  0.012   T-cell leukemia homeobox 1 
ARID1A                0.012   AT rich interactive domain 1A isoform a 
ARID1A                0.012   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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