Guide to the Human Genome
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Name: LOC100290466 Sequence: fasta or formatted (68aa) NCBI GI: 239749536
Description:

PREDICTED: hypothetical protein XP_002347073

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            29.4         20           3
 C cysteine            0.0          0           0
 D aspartate           1.5          1           1
 E glutamate           4.4          3           1
 F phenylalanine       0.0          0           0
 G glycine            19.1         13           4
 H histidine           1.5          1           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            10.3          7           2
 M methionine          2.9          2           1
 N asparagine          1.5          1           1
 P proline             1.5          1           1
 Q glutamine           1.5          1           1
 R arginine           14.7         10           2
 S serine              5.9          4           1
 T threonine           2.9          2           1
 V valine              2.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347073 
LOC100292904          1.000   PREDICTED: hypothetical protein 
LOC100289413          0.990   PREDICTED: hypothetical protein XP_002342934 
LOC100129463          0.095   PREDICTED: hypothetical protein 
LOC100129463          0.095   PREDICTED: hypothetical protein 
LOC100129463          0.095   PREDICTED: hypothetical protein 
LOC100129463          0.095   PREDICTED: hypothetical protein 
CCDC85C               0.076   coiled-coil domain containing 85C 
LOC728767             0.076   PREDICTED: hypothetical protein 
LOC728767             0.076   PREDICTED: hypothetical protein 
MTMR1                 0.076   myotubularin-related protein 1 
HOXA13                0.057   homeobox A13 
AVEN                  0.057   cell death regulator aven 
SCRT1                 0.057   scratch 
MLL                   0.048   myeloid/lymphoid or mixed-lineage leukemia protein [...
LOC100292370          0.048   PREDICTED: hypothetical protein 
LOC100292058          0.048   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.048   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.048   PREDICTED: hypothetical protein XP_002343287 
WTIP                  0.048   Wilms tumor 1 interacting protein 
LMO2                  0.048   LIM domain only 2 isoform 1 
USP31                 0.048   ubiquitin specific peptidase 31 
GDF7                  0.048   growth differentiation factor 7 preproprotein 
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.048   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100287250          0.048   PREDICTED: hypothetical protein XP_002344493 
ZSWIM6                0.048   zinc finger, SWIM-type containing 6 
LOC100129036          0.038   PREDICTED: hypothetical protein 
FGF20                 0.038   fibroblast growth factor 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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