Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239754810
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]
(421 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754810 PREDICTED: hypothetical protein [Homo sapiens] 901 0.0
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 44 2e-04
gi|118402590 myosin XV [Homo sapiens] 40 0.004
gi|239753480 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 37 0.026
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 37 0.026
gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens] 37 0.034
gi|19924099 synapsin I isoform Ia [Homo sapiens] 36 0.075
gi|19924097 synapsin I isoform Ib [Homo sapiens] 36 0.075
gi|116235474 LKB1 interacting protein [Homo sapiens] 36 0.075
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 35 0.17
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 35 0.17
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 35 0.17
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 35 0.17
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 35 0.17
gi|37595553 ring finger protein 111 [Homo sapiens] 35 0.17
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.17
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.22
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 34 0.22
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 34 0.22
gi|156071472 CD2 molecule [Homo sapiens] 33 0.37
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 33 0.37
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 33 0.37
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 33 0.37
gi|8922927 hypothetical protein LOC55321 [Homo sapiens] 33 0.37
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 33 0.37
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens] 33 0.49
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ... 33 0.49
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ... 33 0.49
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 33 0.63
>gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 421
Score = 901 bits (2329), Expect = 0.0
Identities = 421/421 (100%), Positives = 421/421 (100%)
Query: 1 MRTQRKGDGQTGSSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQ 60
MRTQRKGDGQTGSSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQ
Sbjct: 1 MRTQRKGDGQTGSSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQ 60
Query: 61 CTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 120
CTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW
Sbjct: 61 CTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 120
Query: 121 SVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPR 180
SVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPR
Sbjct: 121 SVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPR 180
Query: 181 MVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRPLGHEEGQQQPELRM 240
MVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRPLGHEEGQQQPELRM
Sbjct: 181 MVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRPLGHEEGQQQPELRM 240
Query: 241 ASRKGPCQPLSQTWSVGIGWGPSWMPLGGWWAQPCIWTLKAKETPASQTTSAILPLLGVA 300
ASRKGPCQPLSQTWSVGIGWGPSWMPLGGWWAQPCIWTLKAKETPASQTTSAILPLLGVA
Sbjct: 241 ASRKGPCQPLSQTWSVGIGWGPSWMPLGGWWAQPCIWTLKAKETPASQTTSAILPLLGVA 300
Query: 301 GVEGSARVHGPFTTSDLSQIQQHLGSSSENPSHYRKELLHITQSFNLTWHDIYIILISTL 360
GVEGSARVHGPFTTSDLSQIQQHLGSSSENPSHYRKELLHITQSFNLTWHDIYIILISTL
Sbjct: 301 GVEGSARVHGPFTTSDLSQIQQHLGSSSENPSHYRKELLHITQSFNLTWHDIYIILISTL 360
Query: 361 TPDEKGAPGVQLKPTQMNSIIKPLYKIQWPMMHFPTETHTRFTIRETMAPVWTDGAGASS 420
TPDEKGAPGVQLKPTQMNSIIKPLYKIQWPMMHFPTETHTRFTIRETMAPVWTDGAGASS
Sbjct: 361 TPDEKGAPGVQLKPTQMNSIIKPLYKIQWPMMHFPTETHTRFTIRETMAPVWTDGAGASS 420
Query: 421 S 421
S
Sbjct: 421 S 421
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 44.3 bits (103), Expect = 2e-04
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 33/166 (19%)
Query: 14 SLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQCT--PEISMVTPS 71
S P E S ++P P +L P P SR SPPP++ + PE S ++P
Sbjct: 546 SPPFEESPLSPPPE------ELPTSPPPEA------SRLSPPPEESPMSPPPEESPMSPP 593
Query: 72 PGWSVHTGDLDGHPL------PRMVSAHRRSRWSPPPQDGQCT--PEISMVTPSPGWSVH 123
P S + PL + SR SPPP+D + PE S ++P P S
Sbjct: 594 PEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRL 653
Query: 124 TGDLDGHPLP---RMVSAHRRSRWSPPPQDGQCT--PEISMVTPSP 164
+ PLP R+ S SPPP++ + PE S ++P P
Sbjct: 654 S------PLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPP 693
Score = 44.3 bits (103), Expect = 2e-04
Identities = 52/177 (29%), Positives = 72/177 (40%), Gaps = 45/177 (25%)
Query: 14 SLPVEASMVTPSPGCSVHTGDLDGHPLPR------MLSAHRRSRWSPPPQDGQCT--PEI 65
S P E S ++P P S + PL + SR SPPP+D + PE
Sbjct: 582 SPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEE 641
Query: 66 SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCT--PEISMVTPSPGWSVH 123
S ++P P S + PLP + SR SPPP++ + PE S +P P
Sbjct: 642 SPMSPPPEVSRLS------PLPVV------SRLSPPPEESPLSPPPEESPTSPPP----- 684
Query: 124 TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCT--PEISMVTPSPGWSVHTGDLDGHPL 178
SR SPPP+D + PE S +P P S+ + L+ PL
Sbjct: 685 ----------------EASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPL 725
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 40.0 bits (92), Expect = 0.004
Identities = 82/293 (27%), Positives = 113/293 (38%), Gaps = 55/293 (18%)
Query: 13 SSLPVEASMVTPS----PGCSVHTGDLDGHPLPRMLSAH-----RRSRWS---PPPQDGQ 60
SS P A ++P+ P + G L HP P AH + S W+ PP +
Sbjct: 671 SSGPPPAPPLSPALSGLPRPASPYGSLRRHPPPWAAPAHVPPAPQASWWAFVEPPAVSPE 730
Query: 61 CTPEI-SMVTPSPGW--SVHTGDLDGHP--LPRMVSAHRRSRWSP----------PPQDG 105
P++ + P P + S G G P PR A RR WSP P G
Sbjct: 731 VPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPR---ASRRRAWSPLASPQPSLRSSPGLG 787
Query: 106 QCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQD--GQCTPEISMVT-- 161
C+P + PSP S+ TG LP R + SP P+ G+ P S +
Sbjct: 788 YCSP---LAPPSPQLSLRTGPFQPPFLPP-ARRPRSLQESPAPRRAAGRLGPPGSPLPGS 843
Query: 162 ---PSPGWSV-HTGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGS 217
PSP + H+ LP + H R PP V+ +V+ P R P
Sbjct: 844 PRPPSPPLGLCHSPRRSSLNLPSRLP-HTWRRLSEPPTRAVK--PQVRLP---FHRPP-- 895
Query: 218 QRLGPSQRPLGHEEGQQQPELRMASRKGPCQPLSQTWSVGIGWGPSWMPLGGW 270
R G + PL H E ++PE P PL+ +W V + P+ P W
Sbjct: 896 -RAGAWRAPLEHRESPREPEDSETPWTVP--PLAPSWDVDM--PPTQRPPSPW 943
>gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1344
Score = 39.7 bits (91), Expect = 0.005
Identities = 62/237 (26%), Positives = 76/237 (32%), Gaps = 49/237 (20%)
Query: 28 CSVH-TGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVH-TGDLDGHP 85
CSVH T L P + H RS PP + T I+ T P SVH T L
Sbjct: 254 CSVHGTPPLSSRDTPAQFAGHPRSVHGTPPLSSRDT--IAQFTGHPR-SVHGTPPLSSRD 310
Query: 86 LPRMVSAHRRSRWSPPPQDGQCTPE-----ISMVTPSPGWSVH----------TGDLDGH 130
+ H RS PP + TP I+ T P SVH GH
Sbjct: 311 TIAQFTGHHRSVHGTPPLCSRDTPPSSRDTIAQFTGHPH-SVHGTPPLSSRDTIAQFTGH 369
Query: 131 P--------------------LPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHT 170
P P + H RS PP Q TP S P+ ++ H
Sbjct: 370 PHSVHGTPHPVHRTPPLSSRDTPTQFTGHHRSVHGTPPLSSQDTPPSSQDNPAQ-FAGHP 428
Query: 171 GDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEEVQ---EPQSSCSRSPGSQRLGPSQ 224
+ G P P HR P G P S +P S + P+Q
Sbjct: 429 HSVHGTPHP----VHRTPPLSSRDTPTQFTGHHCSVHGTPPLSSQDTPPSSQDNPAQ 481
Score = 35.8 bits (81), Expect = 0.075
Identities = 51/172 (29%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 27 GCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVH-TGDLDGHP 85
G +VHT + P+ HR +R PP + P M P SVH T L
Sbjct: 167 GSAVHTEEAILSAEPQFTGHHRSAR-GTPPLSSRDNPAQFMGHPH---SVHETPLLSSRD 222
Query: 86 LPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVH-TGDLDGHPLPRMVSAHRRSRW 144
P H RS PP TP SVH T L P + H RS
Sbjct: 223 TPAQFMGHPRSVRRTPPLSSWDTP---TQFTKHHCSVHGTPPLSSRDTPAQFAGHPRSVH 279
Query: 145 SPPPQDGQCTPEISMVTPSPGWSVH-TGDLDGHPLPRMVSAHRRSRWLGPPV 195
PP + T I+ T P SVH T L + H RS PP+
Sbjct: 280 GTPPLSSRDT--IAQFTGHPR-SVHGTPPLSSRDTIAQFTGHHRSVHGTPPL 328
Score = 35.4 bits (80), Expect = 0.098
Identities = 33/108 (30%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 23 TPSPGCSVH-TGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSP----GWSVH 77
TP P VH T L P + H RS PP Q TP S P+ SVH
Sbjct: 376 TPHP---VHRTPPLSSRDTPTQFTGHHRSVHGTPPLSSQDTPPSSQDNPAQFAGHPHSVH 432
Query: 78 --------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPS 117
T L P + H S PP Q TP S P+
Sbjct: 433 GTPHPVHRTPPLSSRDTPTQFTGHHCSVHGTPPLSSQDTPPSSQDNPA 480
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 37.4 bits (85), Expect = 0.026
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 119 GWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVT----PSPGWSVHTGDLD 174
GW+V T G + + + SP + +P S T PSPG T
Sbjct: 250 GWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYK 309
Query: 175 GHPLPRMVSAHRRSRWL-GPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRPLGHEEGQ 233
G + + V H +L GPP P VR + Q S + P ++L ++ L H
Sbjct: 310 GRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPG 369
Query: 234 QQPELR----MASRKGPCQPLSQTWSVG 257
ELR A R G C+ W VG
Sbjct: 370 LHLELRGPQLWARRMGKCKVY---WEVG 394
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 37.4 bits (85), Expect = 0.026
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 119 GWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVT----PSPGWSVHTGDLD 174
GW+V T G + + + SP + +P S T PSPG T
Sbjct: 237 GWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYK 296
Query: 175 GHPLPRMVSAHRRSRWL-GPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRPLGHEEGQ 233
G + + V H +L GPP P VR + Q S + P ++L ++ L H
Sbjct: 297 GRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPG 356
Query: 234 QQPELR----MASRKGPCQPLSQTWSVG 257
ELR A R G C+ W VG
Sbjct: 357 LHLELRGPQLWARRMGKCKVY---WEVG 381
>gi|54112117 splicing factor 3b, subunit 1 isoform 1 [Homo sapiens]
Length = 1304
Score = 37.0 bits (84), Expect = 0.034
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 52 WSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPR---MVSAHRRSRWSPPPQDGQCT 108
W P P TP+ + GD GH P S+ R++RW P+ + T
Sbjct: 254 WDPTPSH----------TPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDT 303
Query: 109 PEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRW--SPPPQDGQCTPEIS-------- 158
P + GD G P ++ R+SRW +P Q G TP ++
Sbjct: 304 PGHGSGWAETPRTDRGGDSIGET-PTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT 362
Query: 159 ----MVTPSPG 165
M TP+PG
Sbjct: 363 PAMNMATPTPG 373
Score = 37.0 bits (84), Expect = 0.034
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 23 TPSPGCSVHTGDLDGHPLPR---MLSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTG 79
TP+ + GD GH P S+ R++RW P+ + TP + G
Sbjct: 261 TPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGG 320
Query: 80 DLDGHPLPRMVSAHRRSRW--SPPPQDGQCTPEIS------------MVTPSPG 119
D G P ++ R+SRW +P Q G TP ++ M TP+PG
Sbjct: 321 DSIGET-PTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPG 373
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.075
Identities = 51/197 (25%), Positives = 64/197 (32%), Gaps = 42/197 (21%)
Query: 69 TPSPGWSVHTGDLDGHPLPRMVS---AHRRSRWSPPPQDGQCTPEIS--------MVTPS 117
TPSPG PL R S A ++ PPPQ G P P
Sbjct: 436 TPSPG---------ALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486
Query: 118 PGWSVHTGDLD---GHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLD 174
P H L G PLP+ + P P P P+ G + +
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRL---------PSPTSAPQQPASQAAPPTQGQGRQSRPVA 537
Query: 175 GHP----LPRMVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQ-RLGPSQRPLGH 229
G P R ++ R GPP + P + PG Q R GP Q+P G
Sbjct: 538 GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG- 596
Query: 230 EEGQQQPELRMASRKGP 246
R AS+ GP
Sbjct: 597 ----PAGPTRQASQAGP 609
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 35.8 bits (81), Expect = 0.075
Identities = 51/197 (25%), Positives = 64/197 (32%), Gaps = 42/197 (21%)
Query: 69 TPSPGWSVHTGDLDGHPLPRMVS---AHRRSRWSPPPQDGQCTPEIS--------MVTPS 117
TPSPG PL R S A ++ PPPQ G P P
Sbjct: 436 TPSPG---------ALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPP 486
Query: 118 PGWSVHTGDLD---GHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLD 174
P H L G PLP+ + P P P P+ G + +
Sbjct: 487 PQGQQHLSGLGPPAGSPLPQRL---------PSPTSAPQQPASQAAPPTQGQGRQSRPVA 537
Query: 175 GHP----LPRMVSAHRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQ-RLGPSQRPLGH 229
G P R ++ R GPP + P + PG Q R GP Q+P G
Sbjct: 538 GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG- 596
Query: 230 EEGQQQPELRMASRKGP 246
R AS+ GP
Sbjct: 597 ----PAGPTRQASQAGP 609
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 35.8 bits (81), Expect = 0.075
Identities = 54/215 (25%), Positives = 77/215 (35%), Gaps = 33/215 (15%)
Query: 54 PPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISM 113
P P TPE S P S+ +G + PL V + R R + + PE
Sbjct: 353 PLPWPVGSTPETSG-GPDLSDSLSSGGVVTQPLLHKVKSRVRVRRASISEPSDTDPEPRT 411
Query: 114 VTPSP-GWSVHTGDLDGHPLPRMVSAHR----------RSRWSPPPQDGQCTPEISMVTP 162
+ PSP GW V HP ++S+ R RS P TP S +
Sbjct: 412 LNPSPAGWFVQQ-----HPELELMSSFRERFGRNWLQYRSHLEPSGNPLPATPTTSAPSA 466
Query: 163 SPGWSVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEEVQ-EPQSSCSRSPGSQR-- 219
P S D P P A GP ++ EEV+ EPQ G +
Sbjct: 467 PPA-SSQGPDTAPRPSPPQEEAR------GPQESPQKMSEEVRAEPQEEEEEKEGKEEKE 519
Query: 220 ----LGPSQRPLGHEEGQQQPELRMASRKGPCQPL 250
+ + G EE ++Q + + + C+PL
Sbjct: 520 EGEMVEQGEEEAGEEEEEEQDQKEVEAEL--CRPL 552
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 54 PPPQD-GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEIS 112
PPP+D G ++ PG G G +P V + P G P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPG----VGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ 140
Query: 113 MVTPSPGWSVH------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 166
++TP +V T + G P + + R +PPP G+ TP ++ P PG
Sbjct: 141 VMTPQGRGTVAAAAVAATASIAGAP-----TQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195
Query: 167 SVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVR 199
G G P R + PP P +R
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIR 228
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 54 PPPQD-GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEIS 112
PPP+D G ++ PG G G +P V + P G P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPG----VGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ 140
Query: 113 MVTPSPGWSVH------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 166
++TP +V T + G P + + R +PPP G+ TP ++ P PG
Sbjct: 141 VMTPQGRGTVAAAAVAATASIAGAP-----TQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195
Query: 167 SVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVR 199
G G P R + PP P +R
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIR 228
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 54 PPPQD-GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEIS 112
PPP+D G ++ PG G G +P V + P G P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPG----VGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ 140
Query: 113 MVTPSPGWSVH------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 166
++TP +V T + G P + + R +PPP G+ TP ++ P PG
Sbjct: 141 VMTPQGRGTVAAAAVAATASIAGAP-----TQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195
Query: 167 SVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVR 199
G G P R + PP P +R
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIR 228
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 54 PPPQD-GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEIS 112
PPP+D G ++ PG G G +P V + P G P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPG----VGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ 140
Query: 113 MVTPSPGWSVH------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 166
++TP +V T + G P + + R +PPP G+ TP ++ P PG
Sbjct: 141 VMTPQGRGTVAAAAVAATASIAGAP-----TQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195
Query: 167 SVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVR 199
G G P R + PP P +R
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIR 228
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 34.7 bits (78), Expect = 0.17
Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 54 PPPQD-GQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEIS 112
PPP+D G ++ PG G G +P V + P G P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPG----VGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQ 140
Query: 113 MVTPSPGWSVH------TGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGW 166
++TP +V T + G P + + R +PPP G+ TP ++ P PG
Sbjct: 141 VMTPQGRGTVAAAAVAATASIAGAP-----TQYPPGRGTPPPPVGRATPPPGIMAPPPGM 195
Query: 167 SVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVR 199
G G P R + PP P +R
Sbjct: 196 RPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIR 228
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 34.7 bits (78), Expect = 0.17
Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 18/156 (11%)
Query: 39 PLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVH---TGDLDGHPLPRMVSAHRR 95
PL SA S +PPPQ Q P++ V P P + H + HP+ H
Sbjct: 656 PLHHQASACPHSHGNPPPQT-QPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLA 714
Query: 96 SRWSPPPQDGQCTPE-ISMVTPS---PGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDG 151
S +P PQ T + IS P+ P +H ++ + RM RR P
Sbjct: 715 STAAPIPQHLPPTHQPISHHIPATAPPAQRLHPHEV----MQRMEVQRRRMMQHPTRAHE 770
Query: 152 QCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRR 187
+ P + P+ G H +P+ +S+H R
Sbjct: 771 RPPPHPHRMHPNYGHGHHI------HVPQTMSSHPR 800
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.7 bits (78), Expect = 0.17
Identities = 64/268 (23%), Positives = 92/268 (34%), Gaps = 42/268 (15%)
Query: 7 GDGQTGSSLPVEASMVTPSPGCSVHTG-------DLDGHPLPRMLSAHRRSRWSPPPQDG 59
G QTG S+ PSPG +H G + G P+M + +S PP
Sbjct: 735 GPQQTGPSMSPH-----PSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYS 789
Query: 60 QCTPEISMVTPSPGWSVHTGD-LDGH---------PLPRMVSAHRRSRWSPPPQDGQCTP 109
P S P PG + + + G PL RM SA ++R P G +
Sbjct: 790 G-VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNR----PFPGNMS- 843
Query: 110 EISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVH 169
SM SPG S G G P+P + + + S PG ++
Sbjct: 844 --SMTPSSPGMSQQGGPGMGPPMPTV--NRKAQEAAAAVMQAAANSAQSRQGSFPG--MN 897
Query: 170 TGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEEVQEPQSSC-----SRSPGSQRLGPSQ 224
L P + S + P + + ++ SPG +L
Sbjct: 898 QSGLMASSSPYSQPMNNSSSLMNTQAPPYSMAPAMVNSSAASVGLADMMSPGESKLPLPL 957
Query: 225 RPLGHEEGQQQPELRMA---SRKGPCQP 249
+ G EEG QPE + S +G QP
Sbjct: 958 KADGKEEGTPQPESKSKDSYSSQGISQP 985
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.22
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 28/140 (20%)
Query: 132 LPRMVSAHRRSRWSPPPQDGQCTP-EISMVTPSPGW-------SVHTGDLDGHPLPRMVS 183
LPR S RS SP +DG TP S+ SPG S + D P P+ +
Sbjct: 1431 LPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALP 1490
Query: 184 AHRRSRWLGPPVPVV----------RVGEEVQEPQSSCSRSPGSQR----------LGPS 223
R R P P + R G E Q + +R+P QR + PS
Sbjct: 1491 QTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPS 1550
Query: 224 QRPLGHEEGQQQPELRMASR 243
P E P+ + +R
Sbjct: 1551 ASPQERSESDSSPDSKAKTR 1570
Score = 32.7 bits (73), Expect = 0.63
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 18/154 (11%)
Query: 116 PSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTP-------EISMVTPSPGWSV 168
PSP S T HP P+ +A R SR SP P+ TP +T S
Sbjct: 1647 PSPEGSSSTESSPEHP-PKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSR 1705
Query: 169 HTGDLDGHPLPRMVSA--HRRSRWLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLG--PSQ 224
+ P R + HRRS + P P + + +S R+ + R G PS
Sbjct: 1706 RSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSP 1765
Query: 225 RPLGHEEGQQQPE------LRMASRKGPCQPLSQ 252
+P G + + + R R G Q S+
Sbjct: 1766 KPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSR 1799
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.3 bits (77), Expect = 0.22
Identities = 42/144 (29%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 7 GDGQTGSSLPVEASMVTPSPGCSVHTG-------DLDGHPLPRMLSAHRRSRWSPPPQDG 59
G QTG S+ PSPG +H G + G P+M + +S PP
Sbjct: 748 GPQQTGPSMSPH-----PSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYS 802
Query: 60 QCTPEISMVTPSPGWSVHTGD-LDGH---------PLPRMVSAHRRSRWSPPPQDGQCTP 109
P S P PG + + + G PL RM SA ++R P G +
Sbjct: 803 G-VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNR----PFPGNMS- 856
Query: 110 EISMVTPSPGWSVHTGDLDGHPLP 133
SM SPG S G G P+P
Sbjct: 857 --SMTPSSPGMSQQGGPGMGPPMP 878
Score = 32.7 bits (73), Expect = 0.63
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 25/127 (19%)
Query: 70 PSPGWSVHTG-------DLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSV 122
PSPG +H G + G P+M + +S PP P S P PG +
Sbjct: 760 PSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSG-VPSASYSGPGPGMGI 818
Query: 123 HTGD-LDGH---------PLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGD 172
+ + G PL RM SA ++R P G + SM SPG S G
Sbjct: 819 SANNQMHGQGPSQPCGAVPLGRMPSAGMQNR----PFPGNMS---SMTPSSPGMSQQGGP 871
Query: 173 LDGHPLP 179
G P+P
Sbjct: 872 GMGPPMP 878
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.3 bits (77), Expect = 0.22
Identities = 42/144 (29%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 7 GDGQTGSSLPVEASMVTPSPGCSVHTG-------DLDGHPLPRMLSAHRRSRWSPPPQDG 59
G QTG S+ PSPG +H G + G P+M + +S PP
Sbjct: 735 GPQQTGPSMSPH-----PSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYS 789
Query: 60 QCTPEISMVTPSPGWSVHTGD-LDGH---------PLPRMVSAHRRSRWSPPPQDGQCTP 109
P S P PG + + + G PL RM SA ++R P G +
Sbjct: 790 G-VPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGMQNR----PFPGNMS- 843
Query: 110 EISMVTPSPGWSVHTGDLDGHPLP 133
SM SPG S G G P+P
Sbjct: 844 --SMTPSSPGMSQQGGPGMGPPMP 865
Score = 32.7 bits (73), Expect = 0.63
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 25/127 (19%)
Query: 70 PSPGWSVHTG-------DLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSV 122
PSPG +H G + G P+M + +S PP P S P PG +
Sbjct: 747 PSPGGQMHAGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSG-VPSASYSGPGPGMGI 805
Query: 123 HTGD-LDGH---------PLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGD 172
+ + G PL RM SA ++R P G + SM SPG S G
Sbjct: 806 SANNQMHGQGPSQPCGAVPLGRMPSAGMQNR----PFPGNMS---SMTPSSPGMSQQGGP 858
Query: 173 LDGHPLP 179
G P+P
Sbjct: 859 GMGPPMP 865
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 33.5 bits (75), Expect = 0.37
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 130 HPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSR 189
H +P + + PPP G + S P PG V P P H++
Sbjct: 266 HQIPASTPQNPATSQHPPPPPGHRSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQVHQQK- 324
Query: 190 WLGPPVPVVRVGEEVQEPQSSCSRSPGS 217
GPP+P RV + + S SP S
Sbjct: 325 --GPPLPRPRVQPKPPHGAAENSLSPSS 350
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 53 SPPPQDGQCTPEI-SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEI 111
SP PQD P S TP+P S + P + S PP+ P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTP 218
Query: 112 SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 164
TP+P S P + S +P P PE + V P+P
Sbjct: 219 PATTPAPPSS-------SAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.4 bits (67), Expect = 3.1
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 13 SSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSP 72
SS P E + P+P + P + S +P P PE + V P+P
Sbjct: 205 SSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Query: 73 GWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 118
S T D P SA PP+ P S TP+P
Sbjct: 265 --SATTLD------PSSASA--------PPETTAAPPTPSATTPAP 294
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 53 SPPPQDGQCTPEI-SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEI 111
SP PQD P S TP+P S + P + S PP+ P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTP 218
Query: 112 SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 164
TP+P S P + S +P P PE + V P+P
Sbjct: 219 PATTPAPPSS-------SAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.4 bits (67), Expect = 3.1
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 13 SSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSP 72
SS P E + P+P + P + S +P P PE + V P+P
Sbjct: 205 SSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Query: 73 GWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 118
S T D P SA PP+ P S TP+P
Sbjct: 265 --SATTLD------PSSASA--------PPETTAAPPTPSATTPAP 294
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 33.5 bits (75), Expect = 0.37
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 53 SPPPQDGQCTPEI-SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEI 111
SP PQD P S TP+P S + P + S PP+ P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTP 218
Query: 112 SMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 164
TP+P S P + S +P P PE + V P+P
Sbjct: 219 PATTPAPPSS-------SAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Score = 30.4 bits (67), Expect = 3.1
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 16/106 (15%)
Query: 13 SSLPVEASMVTPSPGCSVHTGDLDGHPLPRMLSAHRRSRWSPPPQDGQCTPEISMVTPSP 72
SS P E + P+P + P + S +P P PE + V P+P
Sbjct: 205 SSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTP 264
Query: 73 GWSVHTGDLDGHPLPRMVSAHRRSRWSPPPQDGQCTPEISMVTPSP 118
S T D P SA PP+ P S TP+P
Sbjct: 265 --SATTLD------PSSASA--------PPETTAAPPTPSATTPAP 294
>gi|8922927 hypothetical protein LOC55321 [Homo sapiens]
Length = 256
Score = 33.5 bits (75), Expect = 0.37
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 148 PQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEE---- 203
P+D + P M +P PG + T L A RRS LGP P R G E
Sbjct: 15 PRD-ELGPSFPMASP-PGLELKT-------LSNGPQAPRRSAPLGPVAPT-REGVENACF 64
Query: 204 VQEPQSSCSRSPGSQRLGPSQRPLGHEEG---QQQPELRMASRKGPC-QPLSQTWSVG 257
E + ++PG+ RLG S P G Q+ +L + S +GP +P+S+ G
Sbjct: 65 SSEEHETHFQNPGNTRLGSSPSPPGGVSSLPRSQRDDLSLHSEEGPALEPVSRPVDYG 122
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 33.5 bits (75), Expect = 0.37
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 147 PPQDGQCTPEISMVTPSPG---WSVHTGDLDGHPLPRMVSAHRRSRWLGPPVPVVRVGEE 203
PP D E S+++ W V G+ P R + RR+ PP P
Sbjct: 309 PPGDAGRHLETSVISAGVAAGIWLVEPGEAAQDPATRRTAPPRRTASPEPPAPGA----- 363
Query: 204 VQEPQSSC-SRSPGSQRLGPSQRPLG 228
P +C R PG+ R GP PLG
Sbjct: 364 ---PLPACPGRIPGAARFGPRSCPLG 386
>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
Length = 388
Score = 33.1 bits (74), Expect = 0.49
Identities = 38/157 (24%), Positives = 51/157 (32%), Gaps = 31/157 (19%)
Query: 74 WSVHTGDLDGHPLPRMVSAHRRSRW-SPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPL 132
W + G D P SA +R SPP Q T + V S + TG PL
Sbjct: 53 WVQNPGPPDSEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPL 112
Query: 133 PRM---VSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSR 189
PRM ++ + R+S P HPLP++
Sbjct: 113 PRMPRPLAPFQEKRFSSLP---------------------------HPLPKLAGRDTLGE 145
Query: 190 WLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRP 226
G P + C SPG R P++RP
Sbjct: 146 APGACPPPFEPERLHPAAPAVCDDSPGPGRPLPAKRP 182
>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
sapiens]
Length = 388
Score = 33.1 bits (74), Expect = 0.49
Identities = 38/157 (24%), Positives = 51/157 (32%), Gaps = 31/157 (19%)
Query: 74 WSVHTGDLDGHPLPRMVSAHRRSRW-SPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPL 132
W + G D P SA +R SPP Q T + V S + TG PL
Sbjct: 53 WVQNPGPPDSEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPL 112
Query: 133 PRM---VSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSR 189
PRM ++ + R+S P HPLP++
Sbjct: 113 PRMPRPLAPFQEKRFSSLP---------------------------HPLPKLAGRDTLGE 145
Query: 190 WLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRP 226
G P + C SPG R P++RP
Sbjct: 146 APGACPPPFEPERLHPAAPAVCDDSPGPGRPLPAKRP 182
>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
sapiens]
Length = 388
Score = 33.1 bits (74), Expect = 0.49
Identities = 38/157 (24%), Positives = 51/157 (32%), Gaps = 31/157 (19%)
Query: 74 WSVHTGDLDGHPLPRMVSAHRRSRW-SPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPL 132
W + G D P SA +R SPP Q T + V S + TG PL
Sbjct: 53 WVQNPGPPDSEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPL 112
Query: 133 PRM---VSAHRRSRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSR 189
PRM ++ + R+S P HPLP++
Sbjct: 113 PRMPRPLAPFQEKRFSSLP---------------------------HPLPKLAGRDTLGE 145
Query: 190 WLGPPVPVVRVGEEVQEPQSSCSRSPGSQRLGPSQRP 226
G P + C SPG R P++RP
Sbjct: 146 APGACPPPFEPERLHPAAPAVCDDSPGPGRPLPAKRP 182
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.63
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 140 RRSRWSPPPQDGQCTP---EISMVTPSPGWSVHTGDLDGHPLPRMVSAHRRSRWLGPPVP 196
RR R SP G P ++ + P PG V G G P P ++A R PP P
Sbjct: 33 RRVRGSPWHAAGASFPAPAQLLLPAPPPGSRVSLGSAPGRPPPPALAARR-----APPAP 87
Query: 197 VV----RVGEEVQEPQSSCSRSPGS 217
V R G+ P S +RS G+
Sbjct: 88 PVLIQLRGGDAHPPPAFSRARSSGA 112
Score = 30.0 bits (66), Expect = 4.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 12 GSSLPVEASMVTPSP--GCSVHTGDLDGHPLPRMLSAHRRSRWSPP 55
G+S P A ++ P+P G V G G P P L+A RR+ +PP
Sbjct: 44 GASFPAPAQLLLPAPPPGSRVSLGSAPGRPPPPALAA-RRAPPAPP 88
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,683,413
Number of Sequences: 37866
Number of extensions: 1415263
Number of successful extensions: 4546
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 4369
Number of HSP's gapped (non-prelim): 233
length of query: 421
length of database: 18,247,518
effective HSP length: 105
effective length of query: 316
effective length of database: 14,271,588
effective search space: 4509821808
effective search space used: 4509821808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.