Search of human proteins with 239754510

Search of human proteins with 239754510

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754510 PREDICTED: similar to hCG1644697 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754510 PREDICTED: similar to hCG1644697 [Homo sapiens]          402   e-113
gi|239749071 PREDICTED: similar to hCG1644697 [Homo sapiens]          402   e-113
gi|239743097 PREDICTED: similar to hCG1644697 [Homo sapiens]          402   e-113
gi|239508749 PREDICTED: similar to hCG1644697 [Homo sapiens]          402   e-113
gi|169215894 PREDICTED: similar to hCG1732289 [Homo sapiens]           33   0.15 
gi|169215721 PREDICTED: similar to hCG1732289 [Homo sapiens]           33   0.15 
gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens]           33   0.15 
gi|157743252 pecanex-like 3 [Homo sapiens]                             32   0.34 
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...    32   0.44 
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...    32   0.44 
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]       31   0.58 
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]       31   0.58 
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]       31   0.58 
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]       31   0.58 
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]       31   0.58 
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]       31   0.58 
gi|23510348 TRAF and TNF receptor-associated protein [Homo sapiens]    31   0.76 
gi|7019483 procollagen C-endopeptidase enhancer 2 [Homo sapiens]       31   0.76 
gi|22547204 hairless protein isoform a [Homo sapiens]                  30   0.99 
gi|22547207 hairless protein isoform b [Homo sapiens]                  30   0.99 
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso...    30   0.99 
gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]            30   1.3  
gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo ...    30   1.3  
gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo ...    30   1.3  
gi|118572606 hemicentin 1 [Homo sapiens]                               30   1.3  
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...    30   1.7  
gi|198041703 solute carrier family 22 (organic cation transporte...    30   1.7  
gi|110431348 deleted in colorectal carcinoma [Homo sapiens]            29   2.9  
gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]                 29   2.9  
gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]       29   2.9  

>gi|239754510 PREDICTED: similar to hCG1644697 [Homo sapiens]
          Length = 194

 Score =  402 bits (1034), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60
           MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA
Sbjct: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60

Query: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120
           LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP
Sbjct: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120

Query: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180
           IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR
Sbjct: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180

Query: 181 EELSSFLVPEDAGN 194
           EELSSFLVPEDAGN
Sbjct: 181 EELSSFLVPEDAGN 194


>gi|239749071 PREDICTED: similar to hCG1644697 [Homo sapiens]
          Length = 194

 Score =  402 bits (1034), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60
           MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA
Sbjct: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60

Query: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120
           LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP
Sbjct: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120

Query: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180
           IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR
Sbjct: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180

Query: 181 EELSSFLVPEDAGN 194
           EELSSFLVPEDAGN
Sbjct: 181 EELSSFLVPEDAGN 194


>gi|239743097 PREDICTED: similar to hCG1644697 [Homo sapiens]
          Length = 194

 Score =  402 bits (1034), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60
           MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA
Sbjct: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60

Query: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120
           LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP
Sbjct: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120

Query: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180
           IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR
Sbjct: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180

Query: 181 EELSSFLVPEDAGN 194
           EELSSFLVPEDAGN
Sbjct: 181 EELSSFLVPEDAGN 194


>gi|239508749 PREDICTED: similar to hCG1644697 [Homo sapiens]
          Length = 194

 Score =  402 bits (1034), Expect = e-113
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60
           MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA
Sbjct: 1   MDAAVRPLGWGREQELWTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSA 60

Query: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120
           LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP
Sbjct: 61  LTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFP 120

Query: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180
           IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR
Sbjct: 121 IELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDSCRLGSPR 180

Query: 181 EELSSFLVPEDAGN 194
           EELSSFLVPEDAGN
Sbjct: 181 EELSSFLVPEDAGN 194


>gi|169215894 PREDICTED: similar to hCG1732289 [Homo sapiens]
          Length = 370

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 17  WTPAPQLWFPLGIQA------LSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSGF 70
           W P P    PLG +A         C+           GLG GL GGR    ++     GF
Sbjct: 119 WPPDPAGTQPLGNRAPLQLLRRELCQGQEAFVQQSQVGLGEGLWGGRKLRNSTPGGPEGF 178

Query: 71  VSFRGSRLTGERKGVGTEGHPGFYERRH 98
           +   G R  G+    G  GHP    + H
Sbjct: 179 IREGGLRAVGQWAQRGGTGHPADAAQAH 206


>gi|169215721 PREDICTED: similar to hCG1732289 [Homo sapiens]
          Length = 391

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 17  WTPAPQLWFPLGIQA------LSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSGF 70
           W P P    PLG +A         C+           GLG GL GGR    ++     GF
Sbjct: 140 WPPDPAGTQPLGNRAPLQLLRRELCQGQEAFVQQSQVGLGEGLWGGRKLRNSTPGGPEGF 199

Query: 71  VSFRGSRLTGERKGVGTEGHPGFYERRH 98
           +   G R  G+    G  GHP    + H
Sbjct: 200 IREGGLRAVGQWAQRGGTGHPADAAQAH 227


>gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens]
          Length = 490

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 17  WTPAPQLWFPLGIQA------LSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSGF 70
           W P P    PLG +A         C+           GLG GL GGR    ++     GF
Sbjct: 239 WPPDPAGTQPLGNRAPLQLLRRELCQGQEAFVQQSQVGLGEGLWGGRKLRNSTPGGPEGF 298

Query: 71  VSFRGSRLTGERKGVGTEGHPGFYERRH 98
           +   G R  G+    G  GHP    + H
Sbjct: 299 IREGGLRAVGQWAQRGGTGHPADAAQAH 326


>gi|157743252 pecanex-like 3 [Homo sapiens]
          Length = 2034

 Score = 32.0 bits (71), Expect = 0.34
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 134 PSQRFRHLSHRKTGRREAGN----ERRTLAELTVAPRSSCPSDSCRLGSPREELSSF 186
           P +     S R+  RR AG     +RR   E T  P+ +  SDSC  G+ RE LSSF
Sbjct: 259 PDRALVRTSSRREQRRGAGGYQPLDRRGSGEPT--PQKAGSSDSCFSGTDRETLSSF 313


>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
           [Homo sapiens]
          Length = 660

 Score = 31.6 bits (70), Expect = 0.44
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 55  GGRDSALTSGATQSGFVSFRGSRLT------GERKGVGTEGHPGFY 94
           G RD   +SG++ SGF + RGS         G  +G G  G+ GFY
Sbjct: 596 GARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRGFGGGGYGGFY 641


>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
           [Homo sapiens]
          Length = 660

 Score = 31.6 bits (70), Expect = 0.44
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 55  GGRDSALTSGATQSGFVSFRGSRLT------GERKGVGTEGHPGFY 94
           G RD   +SG++ SGF + RGS         G  +G G  G+ GFY
Sbjct: 596 GARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRGFGGGGYGGFY 641


>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
          Length = 2355

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
          Length = 2477

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
          Length = 2330

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
          Length = 2296

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
          Length = 2421

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
          Length = 2176

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 17   WTPAPQLWFPLGIQALSGCRSSREPSACPTAGLGLGLSGGRDSALTSGATQSG 69
            WTPAP++ F LG++   G  + RE ++   + +  GL+ G +   T    + G
Sbjct: 1107 WTPAPRIGFKLGVRPSQGGEAPREVTSDSGSIVVSGLTPGVEYVYTIQVLRDG 1159


>gi|23510348 TRAF and TNF receptor-associated protein [Homo sapiens]
          Length = 362

 Score = 30.8 bits (68), Expect = 0.76
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 75  GSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFPIELGWE 126
           GS L G R+    EG P   +RR  C +  +V  +SC  A  + F  E  WE
Sbjct: 4   GSCLEGGREAAEEEGEPEVKKRRLLCVEFASV--ASCDAAVAQCFLAENDWE 53


>gi|7019483 procollagen C-endopeptidase enhancer 2 [Homo sapiens]
          Length = 415

 Score = 30.8 bits (68), Expect = 0.76
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 75  GSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFPIE 122
           G  LTGE   +G+EG PG Y    +C   + V      +   R   +E
Sbjct: 34  GGILTGESGFIGSEGFPGVYPPNSKCTWKITVPEGKVVVLNFRFIDLE 81


>gi|22547204 hairless protein isoform a [Homo sapiens]
          Length = 1189

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 44  CPTAGLGLGLSGGRDSALTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQS 103
           CP     L ++ GR +       ++GF        T E       GH         C   
Sbjct: 614 CPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEA------GHAA-------CSLM 660

Query: 104 VNVQISSCALAALRSFPIELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTV 163
           +   +SS ALA L +   ++  +F  R + P Q       R     +AG ++ +  +   
Sbjct: 661 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQA----DARVWAPGDAGQQKESTQKTPP 716

Query: 164 APRSSCPSDSCRLGSPREE 182
            P+ SC  D+ R  S +EE
Sbjct: 717 TPQPSCNGDTHRTKSIKEE 735


>gi|22547207 hairless protein isoform b [Homo sapiens]
          Length = 1134

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 17/139 (12%)

Query: 44  CPTAGLGLGLSGGRDSALTSGATQSGFVSFRGSRLTGERKGVGTEGHPGFYERRHQCKQS 103
           CP     L ++ GR +       ++GF        T E       GH         C   
Sbjct: 614 CPRCSHRLCVACGRVAGTGRAREKAGFQEQSAEECTQEA------GHAA-------CSLM 660

Query: 104 VNVQISSCALAALRSFPIELGWEFHPRTYSPSQRFRHLSHRKTGRREAGNERRTLAELTV 163
           +   +SS ALA L +   ++  +F  R + P Q       R     +AG ++ +  +   
Sbjct: 661 LTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQA----DARVWAPGDAGQQKESTQKTPP 716

Query: 164 APRSSCPSDSCRLGSPREE 182
            P+ SC  D+ R  S +EE
Sbjct: 717 TPQPSCNGDTHRTKSIKEE 735


>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
           isoform b [Homo sapiens]
          Length = 296

 Score = 30.4 bits (67), Expect = 0.99
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 11/48 (22%)

Query: 9   GWGRE---QELWTPAPQLWFP-----LGIQALSG---CRSSREPSACP 45
           GWGR    Q  WTP   L+FP     + +  LSG    R S  P +CP
Sbjct: 214 GWGRRDIPQPFWTPDHPLYFPSSSQNVSLSYLSGSPPARMSPGPCSCP 261


>gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 129 PRTYSPSQRFRHLSHRKTGRREAGNERR----TLAELTVAPRSSCPSDSCRLGSPREELS 184
           PRT   + R    SH  + RR +G  RR    T    + APR+ C + + R  SPR   S
Sbjct: 29  PRTRG-TPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTS 87


>gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo
           sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 129 PRTYSPSQRFRHLSHRKTGRREAGNERR----TLAELTVAPRSSCPSDSCRLGSPREELS 184
           PRT   + R    SH  + RR +G  RR    T    + APR+ C + + R  SPR   S
Sbjct: 29  PRTRG-TPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTS 87


>gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo
           sapiens]
          Length = 140

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 129 PRTYSPSQRFRHLSHRKTGRREAGNERR----TLAELTVAPRSSCPSDSCRLGSPREELS 184
           PRT   + R    SH  + RR +G  RR    T    + APR+ C + + R  SPR   S
Sbjct: 29  PRTRG-TPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTS 87


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 132  YSPSQRFRHLSHRKTGRREAGNERRTLAELTVAPRSSCPSDS 173
            Y P Q +R  SH  +   E  N R +L+      R +CP  S
Sbjct: 5382 YQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGS 5423


>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
           sapiens]
          Length = 662

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 55  GGRDSALTSGATQSGFVSFRGSRLT------GERKGVGTEGHPGFY 94
           G RD   +SGA+ S F S R S         G  +G G  G+ GFY
Sbjct: 598 GARDYRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGGYGGFY 643


>gi|198041703 solute carrier family 22 (organic cation
          transporter), member 18 antisense [Homo sapiens]
          Length = 253

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 13/20 (65%), Positives = 14/20 (70%)

Query: 70 FVSFRGSRLTGERKGVGTEG 89
          F   RGSRLTG RKG G+ G
Sbjct: 64 FCRMRGSRLTGGRKGFGSSG 83


>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
          Length = 1447

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 74   RGSRLTGERKGVGTEGHPGFYERRHQCKQSVNVQISSCALAALRSFPIELGWEFHPRTYS 133
            R +   G+RKG   +  P      H+  +  N++  S    A R  PI+   +  P ++S
Sbjct: 1133 RATHSAGKRKGSQKDLRPPDLWIHHEEMEMKNIEKPSGTDPAGRDSPIQSCQDLTPVSHS 1192

Query: 134  PSQR---FRHLSHRKTGRREAGNERRTLAELTVAPRS 167
             S+     +  SH      EAG+   TL     A R+
Sbjct: 1193 QSETQLGSKSTSHSGQDTEEAGSSMSTLERSLAARRA 1229


>gi|222418615 integrin alpha 7 isoform 3 [Homo sapiens]
          Length = 1044

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 22/81 (27%), Positives = 31/81 (38%)

Query: 88  EGHPGFYERRHQCKQSVNVQISSCALAALRSFPIELGWEFHPRTYSPSQRFRHLSHRKTG 147
           EG P  +E+   C+Q      S  +   L   P    W+   R    +Q    L+H   G
Sbjct: 88  EGRPQGHEQFGFCQQGTAAAFSPDSHYLLFGAPGTYNWKGTARVELCAQGSADLAHLDDG 147

Query: 148 RREAGNERRTLAELTVAPRSS 168
             EAG E+     L   P +S
Sbjct: 148 PYEAGGEKEQDPRLIPVPANS 168


>gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]
          Length = 1141

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 22/81 (27%), Positives = 31/81 (38%)

Query: 88  EGHPGFYERRHQCKQSVNVQISSCALAALRSFPIELGWEFHPRTYSPSQRFRHLSHRKTG 147
           EG P  +E+   C+Q      S  +   L   P    W+   R    +Q    L+H   G
Sbjct: 185 EGRPQGHEQFGFCQQGTAAAFSPDSHYLLFGAPGTYNWKGTARVELCAQGSADLAHLDDG 244

Query: 148 RREAGNERRTLAELTVAPRSS 168
             EAG E+     L   P +S
Sbjct: 245 PYEAGGEKEQDPRLIPVPANS 265


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,550,993
Number of Sequences: 37866
Number of extensions: 403100
Number of successful extensions: 1305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 50
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.