Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HR Sequence: fasta or formatted (1189aa) NCBI GI: 22547204
Description:

hairless protein isoform a

Referenced in:

Additional Genes in Development
Skin and Related Tissues

Other entries for this name:
alt prot [1134aa] hairless protein isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7        103           3
 C cysteine            3.8         45           2
 D aspartate           3.4         41           2
 E glutamate           6.5         77           2
 F phenylalanine       2.3         27           1
 G glycine            11.0        131           3
 H histidine           3.4         41           2
 I isoleucine          1.4         17           2
 K lysine              3.4         40           2
 L leucine            10.8        129           3
 M methionine          0.9         11           1
 N asparagine          1.4         17           1
 P proline            11.5        137           3
 Q glutamine           5.8         69           2
 R arginine            6.0         71           3
 S serine              7.0         83           3
 T threonine           4.4         52           2
 V valine              4.8         57           2
 W tryptophan          2.5         30           1
 Y tyrosine            0.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hairless protein isoform a 
HR                    0.938   hairless protein isoform b 
JMJD1C                0.091   jumonji domain containing 1C isoform b 
JMJD1C                0.085   jumonji domain containing 1C isoform a 
KDM3A                 0.081   jumonji domain containing 1A 
KDM3A                 0.081   jumonji domain containing 1A 
KDM3B                 0.060   jumonji domain containing 1B 
COL3A1                0.008   collagen type III alpha 1 preproprotein 
HCN4                  0.007   hyperpolarization activated cyclic nucleotide-gated p...
LRRC16B               0.007   leucine rich repeat containing 16B 
IRF2BP2               0.007   interferon regulatory factor 2 binding protein 2 is...
RADIL                 0.007   Rap GTPase interactor 
IRF2BP2               0.007   interferon regulatory factor 2 binding protein 2 is...
COL7A1                0.007   alpha 1 type VII collagen precursor 
COL4A6                0.007   type IV alpha 6 collagen isoform A precursor 
AATK                  0.007   apoptosis-associated tyrosine kinase 
LMTK3                 0.007   lemur tyrosine kinase 3 
COL4A6                0.007   type IV alpha 6 collagen isoform B precursor 
SHROOM1               0.007   shroom family member 1 
CASKIN1               0.006   CASK interacting protein 1 
MYO15A                0.006   myosin XV 
IRF2BP1               0.006   interferon regulatory factor 2 binding protein 1 [Ho...
COL2A1                0.006   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.006   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.006   alpha 1 type V collagen preproprotein 
MBD6                  0.006   methyl-CpG binding domain protein 6 
COL11A1               0.006   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.006   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.006   alpha 1 type XI collagen isoform A preproprotein [Ho...
PPP1R10               0.006   protein phosphatase 1, regulatory subunit 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press