Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC388849 Sequence: fasta or formatted (490aa) NCBI GI: 169215507
Description:

PREDICTED: similar to hCG1732289

Not currently referenced in the text

Other entries for this name:
alt prot {391aa} PREDICTED: similar to hCG1732289
alt prot {370aa} PREDICTED: similar to hCG1732289
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         27           2
 C cysteine            1.6          8           1
 D aspartate           1.8          9           1
 E glutamate           5.1         25           2
 F phenylalanine       2.2         11           1
 G glycine             7.1         35           2
 H histidine           1.6          8           1
 I isoleucine          1.2          6           1
 K lysine              2.7         13           2
 L leucine            10.4         51           3
 M methionine          6.9         34           1
 N asparagine          2.2         11           2
 P proline             4.7         23           2
 Q glutamine           5.5         27           2
 R arginine            5.1         25           2
 S serine              3.5         17           2
 T threonine           2.7         13           1
 V valine             28.0        137           7
 W tryptophan          1.6          8           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1732289 
LOC388849             0.774   PREDICTED: similar to hCG1732289 
LOC388849             0.722   PREDICTED: similar to hCG1732289 
LOC100289996          0.071   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.071   PREDICTED: hypothetical protein XP_002343076 
LOC100292299          0.049   PREDICTED: hypothetical protein 
LOC100291477          0.049   PREDICTED: hypothetical protein XP_002347760 
LOC100287829          0.049   PREDICTED: hypothetical protein XP_002343532 
TMCO5A                0.026   transmembrane and coiled-coil domains 5A 
LOC100290205          0.020   PREDICTED: hypothetical protein XP_002348254 
WDR33                 0.016   WD repeat domain 33 isoform 1 
MYH9                  0.012   myosin, heavy polypeptide 9, non-muscle 
TMEM191C              0.012   PREDICTED: hypothetical protein 
TMEM191C              0.012   PREDICTED: hypothetical protein 
LOC100291351          0.012   PREDICTED: hypothetical protein XP_002347312 
TMEM191C              0.012   PREDICTED: hypothetical protein 
TMEM191B              0.012   PREDICTED: hypothetical protein isoform 2 
PPP1R9B               0.011   protein phosphatase 1, regulatory subunit 9B 
LOC100289316          0.011   PREDICTED: hypothetical protein 
LOC100289316          0.011   PREDICTED: hypothetical protein XP_002343619 
MYH2                  0.011   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.011   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.011   myosin, heavy polypeptide 4, skeletal muscle 
LOC100288109          0.010   PREDICTED: hypothetical protein XP_002342963 
MYH7B                 0.010   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
LOC100128528          0.010   PREDICTED: hypothetical protein 
LOC100128528          0.010   PREDICTED: hypothetical protein 
LOC100128528          0.010   PREDICTED: hypothetical protein 
C12orf70              0.009   hypothetical protein LOC341346 
LOC100133311          0.009   PREDICTED: similar to hCG1644697 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press