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Search of human proteins with 11863152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
(1246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 2526 0.0
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 147 5e-35
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 147 5e-35
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 146 1e-34
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 146 1e-34
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 143 1e-33
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 143 1e-33
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 134 5e-31
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 134 5e-31
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 131 4e-30
gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] 88 4e-17
gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] 88 4e-17
gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] 88 4e-17
gi|39653317 jumonji domain containing 2D [Homo sapiens] 84 8e-16
gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens] 81 5e-15
gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens] 81 5e-15
gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens] 81 5e-15
gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens] 81 5e-15
gi|239744460 PREDICTED: hypothetical protein [Homo sapiens] 80 1e-14
gi|239755681 PREDICTED: hypothetical protein [Homo sapiens] 80 2e-14
gi|239750150 PREDICTED: hypothetical protein [Homo sapiens] 80 2e-14
gi|45504380 jumonji domain containing 2B [Homo sapiens] 79 3e-14
gi|98986459 jumonji domain containing 2A [Homo sapiens] 74 7e-13
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 52 3e-06
gi|87299628 biorientation of chromosomes in cell division 1-like... 50 1e-05
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 50 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 49 3e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 49 3e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 49 4e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 47 1e-04
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 2526 bits (6547), Expect = 0.0
Identities = 1246/1246 (100%), Positives = 1246/1246 (100%)
Query: 1 MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNSQKRQHAEGIAGSLKTVN 60
MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNSQKRQHAEGIAGSLKTVN
Sbjct: 1 MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNSQKRQHAEGIAGSLKTVN 60
Query: 61 GLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS 120
GLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS
Sbjct: 61 GLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQS 120
Query: 121 QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ 180
QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ
Sbjct: 121 QPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQ 180
Query: 181 DEEEVEEEDDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQK 240
DEEEVEEEDDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQK
Sbjct: 181 DEEEVEEEDDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQK 240
Query: 241 HKSKEATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLR 300
HKSKEATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLR
Sbjct: 241 HKSKEATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLR 300
Query: 301 KQVSKVNGVTRMSSLGAGVTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDT 360
KQVSKVNGVTRMSSLGAGVTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDT
Sbjct: 301 KQVSKVNGVTRMSSLGAGVTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDT 360
Query: 361 KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTK 420
KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTK
Sbjct: 361 KPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTK 420
Query: 421 EVGGRQLREGLQLREGLRNSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGL 480
EVGGRQLREGLQLREGLRNSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGL
Sbjct: 421 EVGGRQLREGLQLREGLRNSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGL 480
Query: 481 LNGHVKKEVPERSLERNRPKRATAGKSTPGRQAHGKADSASCENRSTSQPESVHKPQDSG 540
LNGHVKKEVPERSLERNRPKRATAGKSTPGRQAHGKADSASCENRSTSQPESVHKPQDSG
Sbjct: 481 LNGHVKKEVPERSLERNRPKRATAGKSTPGRQAHGKADSASCENRSTSQPESVHKPQDSG 540
Query: 541 KAEKGGGKAGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECK 600
KAEKGGGKAGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECK
Sbjct: 541 KAEKGGGKAGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECK 600
Query: 601 LNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFR 660
LNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFR
Sbjct: 601 LNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFR 660
Query: 661 LINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLE 720
LINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLE
Sbjct: 661 LINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLE 720
Query: 721 KEVLMEKEILEKRKGPLEGHTENDHHKFHPLPRFEPKNGLIHGVAPRNGFRSKLKEVGQA 780
KEVLMEKEILEKRKGPLEGHTENDHHKFHPLPRFEPKNGLIHGVAPRNGFRSKLKEVGQA
Sbjct: 721 KEVLMEKEILEKRKGPLEGHTENDHHKFHPLPRFEPKNGLIHGVAPRNGFRSKLKEVGQA 780
Query: 781 QLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKE 840
QLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKE
Sbjct: 781 QLKTGRRRLFAQEKEVVKEEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKE 840
Query: 841 PAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTG 900
PAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTG
Sbjct: 841 PAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTG 900
Query: 901 SILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKL 960
SILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKL
Sbjct: 901 SILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKL 960
Query: 961 EDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVC 1020
EDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVC
Sbjct: 961 EDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVC 1020
Query: 1021 CGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLST 1080
CGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLST
Sbjct: 1021 CGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLST 1080
Query: 1081 ISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQ 1140
ISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQ
Sbjct: 1081 ISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQ 1140
Query: 1141 ICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKV 1200
ICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKV
Sbjct: 1141 ICQHLCYLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKV 1200
Query: 1201 SGKNGSIENCLSKPTPKRGPRKRATVDVPPSRLSASSSSKSASSSS 1246
SGKNGSIENCLSKPTPKRGPRKRATVDVPPSRLSASSSSKSASSSS
Sbjct: 1201 SGKNGSIENCLSKPTPKRGPRKRATVDVPPSRLSASSSSKSASSSS 1246
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 147 bits (372), Expect = 5e-35
Identities = 117/393 (29%), Positives = 183/393 (46%), Gaps = 39/393 (9%)
Query: 818 RSVSLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTH 873
R +L +F A N S F+ P E +E+E+WRLV + V V G + +
Sbjct: 359 REYTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDF 418
Query: 874 GSGFPVG--------KSEPFSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFS 924
GSGFPV + E ++ GWNL +P S+L H+ + G+ +PWL +GM FS
Sbjct: 419 GSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFS 478
Query: 925 TSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVM 984
+ CW + + I+YLH G WY +P+ +LE+V+ L +L V
Sbjct: 479 SFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVT 538
Query: 985 I-SPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFET 1043
I +P VL + G+ V+RT Q +G+FVV FP ++ S GY+ +E V+F T W +G +
Sbjct: 539 IMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQC 598
Query: 1044 AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAG 1103
+R FS E+L++++A A+ + + + + L + + E R R + + G
Sbjct: 599 VNHYRRLRRHCVFSHEELIFKMA-ADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMG 657
Query: 1104 LHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLS-MVVQENENVVFCL 1162
+ S + V D ER+C C+ C+LS + N + CL
Sbjct: 658 VLMS----EEEVFELVPD-------------DERQCSACRTTCFLSALTCSCNPERLVCL 700
Query: 1163 --ECALRHVEKQKSCRGLKLMYRYDEEQIISLV 1193
L QK C L YRY E + SL+
Sbjct: 701 YHPTDLCPCPMQKKC----LRYRYPLEDLPSLL 729
Score = 82.4 bits (202), Expect = 2e-15
Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 41/305 (13%)
Query: 545 GGGKAGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRP--ECKLN 602
GG A + E PV PS +EF DPL +I +R EK G+C++ PP DW+P C++
Sbjct: 7 GGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPFACEVK 66
Query: 603 DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLI 662
RF ++Q +++L + L + K + QG T+ ++P++ LDL +++
Sbjct: 67 -SFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIV 124
Query: 663 NEMGGMQQVTDLKKWNKLADML-RIPRTAQDRLAKLQEAYCQYLLSYD------SLSPEE 715
GG + VT KKW+K+ L +P L L+ Y + L Y+ SL +
Sbjct: 125 ASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSL--LKSHYERILYPYELFQSGVSLMGVQ 182
Query: 716 HRRLEKEVLMEKEIL--EKRKGPLEGHTENDHHKFHPLPRFEPKNG-----------LIH 762
L+ + +E E+L + + P G N K + + ++G I
Sbjct: 183 MPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQSESGDVSRNTELKKLQIF 242
Query: 763 GVAPR-----NGFRSKLKEVGQAQLKTGRRRLFAQEKEVVKEEEEDKGVLN----DFHKC 813
G P+ G + K EV T RR++ + + + KG L+ D + C
Sbjct: 243 GAGPKVVGLAMGTKDKEDEV------TRRRKVTNRSDAFNMQMRQRKGTLSVNFVDLYVC 296
Query: 814 IYKGR 818
++ GR
Sbjct: 297 MFCGR 301
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 147 bits (372), Expect = 5e-35
Identities = 117/393 (29%), Positives = 183/393 (46%), Gaps = 39/393 (9%)
Query: 818 RSVSLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTH 873
R +L +F A N S F+ P E +E+E+WRLV + V V G + +
Sbjct: 359 REYTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDF 418
Query: 874 GSGFPVG--------KSEPFSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFS 924
GSGFPV + E ++ GWNL +P S+L H+ + G+ +PWL +GM FS
Sbjct: 419 GSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFS 478
Query: 925 TSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVM 984
+ CW + + I+YLH G WY +P+ +LE+V+ L +L V
Sbjct: 479 SFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVT 538
Query: 985 I-SPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFET 1043
I +P VL + G+ V+RT Q +G+FVV FP ++ S GY+ +E V+F T W +G +
Sbjct: 539 IMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQC 598
Query: 1044 AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAG 1103
+R FS E+L++++A A+ + + + + L + + E R R + + G
Sbjct: 599 VNHYRRLRRHCVFSHEELIFKMA-ADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMG 657
Query: 1104 LHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLS-MVVQENENVVFCL 1162
+ S + V D ER+C C+ C+LS + N + CL
Sbjct: 658 VLMS----EEEVFELVPD-------------DERQCSACRTTCFLSALTCSCNPERLVCL 700
Query: 1163 --ECALRHVEKQKSCRGLKLMYRYDEEQIISLV 1193
L QK C L YRY E + SL+
Sbjct: 701 YHPTDLCPCPMQKKC----LRYRYPLEDLPSLL 729
Score = 82.4 bits (202), Expect = 2e-15
Identities = 81/305 (26%), Positives = 136/305 (44%), Gaps = 41/305 (13%)
Query: 545 GGGKAGWAAMDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRP--ECKLN 602
GG A + E PV PS +EF DPL +I +R EK G+C++ PP DW+P C++
Sbjct: 7 GGYAAEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPFACEVK 66
Query: 603 DEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLI 662
RF ++Q +++L + L + K + QG T+ ++P++ LDL +++
Sbjct: 67 -SFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILDLYALSKIV 124
Query: 663 NEMGGMQQVTDLKKWNKLADML-RIPRTAQDRLAKLQEAYCQYLLSYD------SLSPEE 715
GG + VT KKW+K+ L +P L L+ Y + L Y+ SL +
Sbjct: 125 ASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSL--LKSHYERILYPYELFQSGVSLMGVQ 182
Query: 716 HRRLEKEVLMEKEIL--EKRKGPLEGHTENDHHKFHPLPRFEPKNG-----------LIH 762
L+ + +E E+L + + P G N K + + ++G I
Sbjct: 183 MPNLDLKEKVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQSESGDVSRNTELKKLQIF 242
Query: 763 GVAPR-----NGFRSKLKEVGQAQLKTGRRRLFAQEKEVVKEEEEDKGVLN----DFHKC 813
G P+ G + K EV T RR++ + + + KG L+ D + C
Sbjct: 243 GAGPKVVGLAMGTKDKEDEV------TRRRKVTNRSDAFNMQMRQRKGTLSVNFVDLYVC 296
Query: 814 IYKGR 818
++ GR
Sbjct: 297 MFCGR 301
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 146 bits (368), Expect = 1e-34
Identities = 107/372 (28%), Positives = 174/372 (46%), Gaps = 50/372 (13%)
Query: 846 IEQEYWRLVEEKDCHVAVHCGK-VDTNTHGSGFPVGKS--------EPFSRHGWNLTVLP 896
+E+E+WRLV + V V G + + GSGFPV S E ++ GWNL V+P
Sbjct: 354 VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMP 413
Query: 897 NNTGSILRHLGA-VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAE 955
S+L H+ A + G+ +PWL +GMVFS CW + + I+YLH G WY +P+
Sbjct: 414 VLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSL 473
Query: 956 EENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGS 1014
LE+V+ L +L V +++P L G+ V RT Q +G+FV+ FP +
Sbjct: 474 AAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRA 533
Query: 1015 FVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKEN 1074
+ S GY+ +E V+F T W G + + +R FS E+L+ ++A K +
Sbjct: 534 YHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLD- 592
Query: 1075 GPTLSTISALLDE---LRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQ 1131
L+ +A+ E + E R R+ L E G+ + R +
Sbjct: 593 ---LNLAAAVHKEMFIMVQEERRLRKALLEKGITEAER-----------------EAFEL 632
Query: 1132 LETSERRCQICQHLCYLSMVVQENENVVFCLEC-----ALRHVEKQKSCRGLK--LMYRY 1184
L ER+C C+ C+LS + C +C L H+ C + L YRY
Sbjct: 633 LPDDERQCIKCKTTCFLSALA--------CYDCPDGLVCLSHINDLCKCSSSRQYLRYRY 684
Query: 1185 DEEQIISLVNQI 1196
+++ ++++++
Sbjct: 685 TLDELPAMLHKL 696
Score = 43.1 bits (100), Expect = 0.002
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPP 592
E PV PS EF DPL YI +R EK G+C++ PP
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPP 49
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 146 bits (368), Expect = 1e-34
Identities = 107/372 (28%), Positives = 174/372 (46%), Gaps = 50/372 (13%)
Query: 846 IEQEYWRLVEEKDCHVAVHCGK-VDTNTHGSGFPVGKS--------EPFSRHGWNLTVLP 896
+E+E+WRLV + V V G + + GSGFPV S E ++ GWNL V+P
Sbjct: 421 VEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMP 480
Query: 897 NNTGSILRHLGA-VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAE 955
S+L H+ A + G+ +PWL +GMVFS CW + + I+YLH G WY +P+
Sbjct: 481 VLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSL 540
Query: 956 EENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGS 1014
LE+V+ L +L V +++P L G+ V RT Q +G+FV+ FP +
Sbjct: 541 AAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRA 600
Query: 1015 FVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKEN 1074
+ S GY+ +E V+F T W G + + +R FS E+L+ ++A K +
Sbjct: 601 YHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLD- 659
Query: 1075 GPTLSTISALLDE---LRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQ 1131
L+ +A+ E + E R R+ L E G+ + R +
Sbjct: 660 ---LNLAAAVHKEMFIMVQEERRLRKALLEKGITEAER-----------------EAFEL 699
Query: 1132 LETSERRCQICQHLCYLSMVVQENENVVFCLEC-----ALRHVEKQKSCRGLK--LMYRY 1184
L ER+C C+ C+LS + C +C L H+ C + L YRY
Sbjct: 700 LPDDERQCIKCKTTCFLSALA--------CYDCPDGLVCLSHINDLCKCSSSRQYLRYRY 751
Query: 1185 DEEQIISLVNQI 1196
+++ ++++++
Sbjct: 752 TLDELPAMLHKL 763
Score = 78.2 bits (191), Expect = 5e-14
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS EF DPL YI +R EK G+C++ PP DW+P + D RF +IQ +
Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRL 72
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDL 674
++L + + L I K + QG ++ ++P + LDL +++ E GG + +
Sbjct: 73 NELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERRILDLYSLSKIVVEEGGYEAICKD 131
Query: 675 KKWNKLADMLRIP 687
++W ++A L P
Sbjct: 132 RRWARVAQRLNYP 144
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 143 bits (360), Expect = 1e-33
Identities = 110/397 (27%), Positives = 183/397 (46%), Gaps = 47/397 (11%)
Query: 821 SLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTHGSG 876
SL +F A + S F+ P E +E+E+WRLV + V V G + + GSG
Sbjct: 326 SLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSG 385
Query: 877 FPVGKSEP--------FSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFSTSC 927
FPV S+ ++ GWNL V+P S+L H+ A + G+ +PWL +GMVFS C
Sbjct: 386 FPVSNSKQNLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFC 445
Query: 928 WSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MIS 986
W + + I+YLH G WY +P+ LE+V+ L +L V +++
Sbjct: 446 WHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMN 505
Query: 987 PEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKE 1046
P L G+ V RT Q +G+FV+ FP ++ S GY+ +E V+F T W G + +
Sbjct: 506 PNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEH 565
Query: 1047 MKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAGLHS 1106
+R FS E+L+ ++A + ++ + +++ E R R+ L E G+
Sbjct: 566 YRRLRRYCVFSHEELICKMAAFPETLDLNLAVAVHKEMFIMVQE-ERRLRKALLEKGVTE 624
Query: 1107 SARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLEC-- 1164
+ R + L ER+C C+ C+LS + C +C
Sbjct: 625 AER-----------------EAFELLPDDERQCIKCKTTCFLSALA--------CYDCPD 659
Query: 1165 ---ALRHVEKQKSCRGLK--LMYRYDEEQIISLVNQI 1196
L H+ C + L YRY +++ ++++++
Sbjct: 660 GLVCLSHINDLCKCSSSRQYLRYRYTLDELPTMLHKL 696
Score = 62.4 bits (150), Expect = 3e-09
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS EF DPL YI +R EK G+C++ PP DW+P + D RF ++Q +
Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRL 72
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDL 655
++L + + L I K + QG ++ ++P + LDL
Sbjct: 73 NELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILDL 112
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 143 bits (360), Expect = 1e-33
Identities = 110/397 (27%), Positives = 183/397 (46%), Gaps = 47/397 (11%)
Query: 821 SLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTHGSG 876
SL +F A + S F+ P E +E+E+WRLV + V V G + + GSG
Sbjct: 383 SLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSG 442
Query: 877 FPVGKSEP--------FSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFSTSC 927
FPV S+ ++ GWNL V+P S+L H+ A + G+ +PWL +GMVFS C
Sbjct: 443 FPVSNSKQNLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFC 502
Query: 928 WSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MIS 986
W + + I+YLH G WY +P+ LE+V+ L +L V +++
Sbjct: 503 WHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMN 562
Query: 987 PEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKE 1046
P L G+ V RT Q +G+FV+ FP ++ S GY+ +E V+F T W G + +
Sbjct: 563 PNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEH 622
Query: 1047 MKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAGLHS 1106
+R FS E+L+ ++A + ++ + +++ E R R+ L E G+
Sbjct: 623 YRRLRRYCVFSHEELICKMAAFPETLDLNLAVAVHKEMFIMVQE-ERRLRKALLEKGVTE 681
Query: 1107 SARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLEC-- 1164
+ R + L ER+C C+ C+LS + C +C
Sbjct: 682 AER-----------------EAFELLPDDERQCIKCKTTCFLSALA--------CYDCPD 716
Query: 1165 ---ALRHVEKQKSCRGLK--LMYRYDEEQIISLVNQI 1196
L H+ C + L YRY +++ ++++++
Sbjct: 717 GLVCLSHINDLCKCSSSRQYLRYRYTLDELPTMLHKL 753
Score = 77.8 bits (190), Expect = 6e-14
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS EF DPL YI +R EK G+C++ PP DW+P + D RF ++Q +
Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRL 72
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDL 674
++L + + L I K + QG ++ ++P + LDL +++ E GG + +
Sbjct: 73 NELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 675 KKWNKLADMLRIP 687
++W ++A L P
Sbjct: 132 RRWARVAQRLHYP 144
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 134 bits (337), Expect = 5e-31
Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 39/396 (9%)
Query: 818 RSVSLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTH 873
R +L TF A S F+ P E +E+E+WRLV + V V G + +
Sbjct: 375 RDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEF 434
Query: 874 GSGFPV--GK------SEPFSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFS 924
GSGFPV GK E + GWNL +P S+L H+ A + G+ +PWL +GM FS
Sbjct: 435 GSGFPVRDGKIKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFS 494
Query: 925 TSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVM 984
+ CW + + I+YLH G WY +P +LE+V+ L +L V
Sbjct: 495 SFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVT 554
Query: 985 I-SPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFET 1043
I +P L + V+RT Q +G+FV+ FP ++ S G++ +E V+F T W +G +
Sbjct: 555 IMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQC 614
Query: 1044 AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAG 1103
+ + H FS ++++ ++A ++A + ST+ + + + E R + + G
Sbjct: 615 VEHYRLLHRYCVFSHDEMICKMA-SKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLG 673
Query: 1104 LHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMV-VQENENVVFCL 1162
+ S R + L ER+C C+ C++S + ++ C
Sbjct: 674 VIDSER-----------------MDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVC- 715
Query: 1163 ECALRHVEKQKSC--RGLKLMYRYDEEQIISLVNQI 1196
L HV++ SC KL YRY + + ++N +
Sbjct: 716 ---LHHVKELCSCPPYKYKLRYRYTLDDLYPMMNAL 748
Score = 79.0 bits (193), Expect = 3e-14
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS +EF DP +I +R E+ G+C+V PPPDW+P + D++ F +IQ +
Sbjct: 31 ECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRL 90
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDL 674
++L + + L I K+ + QG T+ ++P + LDL +L+ E GG V
Sbjct: 91 NELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAEEGGFAVVCKD 149
Query: 675 KKWNKLA 681
+KW K+A
Sbjct: 150 RKWTKIA 156
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 134 bits (337), Expect = 5e-31
Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 39/396 (9%)
Query: 818 RSVSLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTH 873
R +L TF A S F+ P E +E+E+WRLV + V V G + +
Sbjct: 375 RDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEF 434
Query: 874 GSGFPV--GK------SEPFSRHGWNLTVLPNNTGSILRHLGA-VPGVTIPWLNIGMVFS 924
GSGFPV GK E + GWNL +P S+L H+ A + G+ +PWL +GM FS
Sbjct: 435 GSGFPVRDGKIKLSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFS 494
Query: 925 TSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVM 984
+ CW + + I+YLH G WY +P +LE+V+ L +L V
Sbjct: 495 SFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVT 554
Query: 985 I-SPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFET 1043
I +P L + V+RT Q +G+FV+ FP ++ S G++ +E V+F T W +G +
Sbjct: 555 IMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQC 614
Query: 1044 AKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDELRDTELRQRRQLFEAG 1103
+ + H FS ++++ ++A ++A + ST+ + + + E R + + G
Sbjct: 615 VEHYRLLHRYCVFSHDEMICKMA-SKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLG 673
Query: 1104 LHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLCYLSMV-VQENENVVFCL 1162
+ S R + L ER+C C+ C++S + ++ C
Sbjct: 674 VIDSER-----------------MDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVC- 715
Query: 1163 ECALRHVEKQKSC--RGLKLMYRYDEEQIISLVNQI 1196
L HV++ SC KL YRY + + ++N +
Sbjct: 716 ---LHHVKELCSCPPYKYKLRYRYTLDDLYPMMNAL 748
Score = 79.0 bits (193), Expect = 3e-14
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS +EF DP +I +R E+ G+C+V PPPDW+P + D++ F +IQ +
Sbjct: 31 ECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRL 90
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDL 674
++L + + L I K+ + QG T+ ++P + LDL +L+ E GG V
Sbjct: 91 NELEAQTRVKLNFLDQIAKYWELQGSTL-KIPHVERKILDLFQLNKLVAEEGGFAVVCKD 149
Query: 675 KKWNKLA 681
+KW K+A
Sbjct: 150 RKWTKIA 156
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 131 bits (330), Expect = 4e-30
Identities = 110/428 (25%), Positives = 183/428 (42%), Gaps = 78/428 (18%)
Query: 821 SLTTFYRTARNIMSMCFSK--EPAPAE-IEQEYWRLVEEKDCHVAVHCGK-VDTNTHGSG 876
SL +F A + S F+ P E +E+E+WRLV + V V G + + GSG
Sbjct: 383 SLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSG 442
Query: 877 FPVGKS---------------------------------------EPFSRHGWNLTVLPN 897
FPV S + ++ GWNL V+P
Sbjct: 443 FPVSNSKQNLSPEEKRQSLTVLTRLISSFWAQAVLPPWPPKVLGLQEYATSGWNLNVMPV 502
Query: 898 NTGSILRHLGA-VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEE 956
S+L H+ A + G+ +PWL +GMVFS CW + + I+YLH G WY +P+
Sbjct: 503 LDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLA 562
Query: 957 ENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSF 1015
LE+V+ L +L V +++P L G+ V RT Q +G+FV+ FP ++
Sbjct: 563 AEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAY 622
Query: 1016 VSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENG 1075
S GY+ +E V+F T W G + + +R FS E+L+ ++A +
Sbjct: 623 HSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAAFPETLDLN 682
Query: 1076 PTLSTISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETS 1135
++ + +++ E R R+ L E G+ + R + L
Sbjct: 683 LAVAVHKEMFIMVQE-ERRLRKALLEKGVTEAER-----------------EAFELLPDD 724
Query: 1136 ERRCQICQHLCYLSMVVQENENVVFCLEC-----ALRHVEKQKSCRGLK--LMYRYDEEQ 1188
ER+C C+ C+LS + C +C L H+ C + L YRY ++
Sbjct: 725 ERQCIKCKTTCFLSALA--------CYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDE 776
Query: 1189 IISLVNQI 1196
+ ++++++
Sbjct: 777 LPTMLHKL 784
Score = 77.8 bits (190), Expect = 6e-14
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLN-DEMRFVTQIQHI 614
E PV PS EF DPL YI +R EK G+C++ PP DW+P + D RF ++Q +
Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRVQRL 72
Query: 615 HKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDL 674
++L + + L I K + QG ++ ++P + LDL +++ E GG + +
Sbjct: 73 NELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILDLYSLSKIVIEEGGYEAICKD 131
Query: 675 KKWNKLADMLRIP 687
++W ++A L P
Sbjct: 132 RRWARVAQRLHYP 144
>gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 88.2 bits (217), Expect = 4e-17
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 17/229 (7%)
Query: 844 AEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSIL 903
A++EQ YW+ H G + +G+ E ++ WNL L +
Sbjct: 116 ADLEQRYWKS----------HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLE 162
Query: 904 RHLGAV-PGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED 962
+ G V GV P+L GM +T W + L I+YLH G WY +P E +LE
Sbjct: 163 QECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLEC 222
Query: 963 VVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCC 1021
+ L N L V +ISP VL K GI +R Q++G+F+V FP + +
Sbjct: 223 LARELFPGNSRGCEGFLRHKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNH 282
Query: 1022 GYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
G++ +E ++FAT +W G + A + FSM+ + +I Q E+
Sbjct: 283 GFNCAEAINFATPRWIDYG-KVASQCSCGEARVTFSMDAFV-RILQPES 329
>gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 88.2 bits (217), Expect = 4e-17
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 17/229 (7%)
Query: 844 AEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSIL 903
A++EQ YW+ H G + +G+ E ++ WNL L +
Sbjct: 116 ADLEQRYWKS----------HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLE 162
Query: 904 RHLGAV-PGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED 962
+ G V GV P+L GM +T W + L I+YLH G WY +P E +LE
Sbjct: 163 QECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLEC 222
Query: 963 VVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCC 1021
+ L N L V +ISP VL K GI +R Q++G+F+V FP + +
Sbjct: 223 LARELFPGNSRGCEGFLRHKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNH 282
Query: 1022 GYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
G++ +E ++FAT +W G + A + FSM+ + +I Q E+
Sbjct: 283 GFNCAEAINFATPRWIDYG-KVASQCSCGEARVTFSMDAFV-RILQPES 329
>gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 88.2 bits (217), Expect = 4e-17
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 17/229 (7%)
Query: 844 AEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSIL 903
A++EQ YW+ H G + +G+ E ++ WNL L +
Sbjct: 116 ADLEQRYWKS----------HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLE 162
Query: 904 RHLGAV-PGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLED 962
+ G V GV P+L GM +T W + L I+YLH G WY +P E +LE
Sbjct: 163 QECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLEC 222
Query: 963 VVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCC 1021
+ L N L V +ISP VL K GI +R Q++G+F+V FP + +
Sbjct: 223 LARELFPGNSRGCEGFLRHKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNH 282
Query: 1022 GYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
G++ +E ++FAT +W G + A + FSM+ + +I Q E+
Sbjct: 283 GFNCAEAINFATPRWIDYG-KVASQCSCGEARVTFSMDAFV-RILQPES 329
>gi|39653317 jumonji domain containing 2D [Homo sapiens]
Length = 523
Score = 84.0 bits (206), Expect = 8e-16
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Query: 890 WNLTVLPNNTGSILRHLGAV-PGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCI 948
WNL L + + G V GV P+L GM +T W + L I+YLH G
Sbjct: 152 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 211
Query: 949 WYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQF 1007
WY +P E +LE + L + L V +ISP VL + GI +R Q++G+F
Sbjct: 212 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 271
Query: 1008 VVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQ 1067
+V FP + + G++ +E ++FAT +W G + A + FSM+ + +I Q
Sbjct: 272 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG-KMASQCSCGEARVTFSMDAFV-RILQ 329
Query: 1068 AE 1069
E
Sbjct: 330 PE 331
Score = 30.8 bits (68), Expect = 8.4
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 557 IPVLRPSAKEFHDPLIYIESVRAQ-VEKFGMCRVIPPPDWR 596
I + P+ +EF+D YI + +Q + G+ ++IPP +W+
Sbjct: 18 IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 58
>gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens]
Length = 813
Score = 81.3 bits (199), Expect = 5e-15
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 826 YRTARNIMSMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPF 885
+R N C + ++E++YW+ + VA G + +GS + G E
Sbjct: 99 FRQLANSGKYCTPRYLDYEDLERKYWKNLT----FVAPIYG---ADINGSIYDEGVDE-- 149
Query: 886 SRHGWNLTVLPNNTGSILRHLG-AVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944
WN+ L + G ++ GV P+L GM +T W + L I+YLH G
Sbjct: 150 ----WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFG 205
Query: 945 ADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQ 1003
WY IP E +LE + ++ L + +ISP VL K GI + Q+
Sbjct: 206 EPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQE 265
Query: 1004 SGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
+G+F++ FP + + G++ +E+ +FAT +W G
Sbjct: 266 AGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYG 302
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 556 EIPVLRPSAKEFHD---PLIYIESVRAQVEKFGMCRVIPPPDWRP 597
+I RPS +EF + L Y+ES A + G+ +VIPP +W+P
Sbjct: 15 KIMTFRPSMEEFREFNKYLAYMESKGAH--RAGLAKVIPPKEWKP 57
>gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens]
Length = 835
Score = 81.3 bits (199), Expect = 5e-15
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 826 YRTARNIMSMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPF 885
+R N C + ++E++YW+ + VA G + +GS + G E
Sbjct: 121 FRQLANSGKYCTPRYLDYEDLERKYWKNLT----FVAPIYG---ADINGSIYDEGVDE-- 171
Query: 886 SRHGWNLTVLPNNTGSILRHLG-AVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944
WN+ L + G ++ GV P+L GM +T W + L I+YLH G
Sbjct: 172 ----WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFG 227
Query: 945 ADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQ 1003
WY IP E +LE + ++ L + +ISP VL K GI + Q+
Sbjct: 228 EPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQE 287
Query: 1004 SGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
+G+F++ FP + + G++ +E+ +FAT +W G
Sbjct: 288 AGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYG 324
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 556 EIPVLRPSAKEFHD---PLIYIESVRAQVEKFGMCRVIPPPDWRP 597
+I RPS +EF + L Y+ES A + G+ +VIPP +W+P
Sbjct: 37 KIMTFRPSMEEFREFNKYLAYMESKGAH--RAGLAKVIPPKEWKP 79
>gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens]
Length = 1047
Score = 81.3 bits (199), Expect = 5e-15
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 826 YRTARNIMSMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPF 885
+R N C + ++E++YW+ + VA G + +GS + G E
Sbjct: 99 FRQLANSGKYCTPRYLDYEDLERKYWKNLT----FVAPIYG---ADINGSIYDEGVDE-- 149
Query: 886 SRHGWNLTVLPNNTGSILRHLG-AVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944
WN+ L + G ++ GV P+L GM +T W + L I+YLH G
Sbjct: 150 ----WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFG 205
Query: 945 ADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQ 1003
WY IP E +LE + ++ L + +ISP VL K GI + Q+
Sbjct: 206 EPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQE 265
Query: 1004 SGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
+G+F++ FP + + G++ +E+ +FAT +W G
Sbjct: 266 AGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYG 302
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 556 EIPVLRPSAKEFHD---PLIYIESVRAQVEKFGMCRVIPPPDWRP 597
+I RPS +EF + L Y+ES A + G+ +VIPP +W+P
Sbjct: 15 KIMTFRPSMEEFREFNKYLAYMESKGAH--RAGLAKVIPPKEWKP 57
>gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens]
Length = 1056
Score = 81.3 bits (199), Expect = 5e-15
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 826 YRTARNIMSMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPF 885
+R N C + ++E++YW+ + VA G + +GS + G E
Sbjct: 99 FRQLANSGKYCTPRYLDYEDLERKYWKNLT----FVAPIYG---ADINGSIYDEGVDE-- 149
Query: 886 SRHGWNLTVLPNNTGSILRHLG-AVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944
WN+ L + G ++ GV P+L GM +T W + L I+YLH G
Sbjct: 150 ----WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFG 205
Query: 945 ADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQ 1003
WY IP E +LE + ++ L + +ISP VL K GI + Q+
Sbjct: 206 EPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQE 265
Query: 1004 SGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
+G+F++ FP + + G++ +E+ +FAT +W G
Sbjct: 266 AGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYG 302
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 556 EIPVLRPSAKEFHD---PLIYIESVRAQVEKFGMCRVIPPPDWRP 597
+I RPS +EF + L Y+ES A + G+ +VIPP +W+P
Sbjct: 15 KIMTFRPSMEEFREFNKYLAYMESKGAH--RAGLAKVIPPKEWKP 57
>gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 80.1 bits (196), Expect = 1e-14
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 25/270 (9%)
Query: 805 GVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKEPAP--AEIEQEYWRLVEEKDCHVA 862
GV +HK K +++ + + R A S + P A++EQ YW+
Sbjct: 81 GVFTQYHK---KKKAMRVGQYRRLAN---SKKYQTPPHQNFADLEQRYWKS--------- 125
Query: 863 VHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAV-PGVTIPWLNIGM 921
H G + +G+ E ++ WNL L + + G V GV P+L GM
Sbjct: 126 -HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLEQECGVVIEGVNTPYLYFGM 181
Query: 922 VFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLES 981
+T W + L I+YLH G WY +P E LE + L L
Sbjct: 182 WKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRH 241
Query: 982 NV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
V +ISP VL + GI + Q++G+F+V FP + + G++ +E ++FAT +W G
Sbjct: 242 KVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 301
Query: 1041 FETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
+ A + FSM+ + +I Q E+
Sbjct: 302 -KMASQCSCGESTVTFSMDPFV-RIVQPES 329
>gi|239755681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 79.7 bits (195), Expect = 2e-14
Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 31/273 (11%)
Query: 805 GVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKEPAP-----AEIEQEYWRLVEEKDC 859
GV +HK K +++ + + R A + K P A++EQ YW+
Sbjct: 81 GVFTQYHK---KKKAMRVGQYRRLANS------KKYQTPPHRNFADLEQRYWKS------ 125
Query: 860 HVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAV-PGVTIPWLN 918
H G + +G+ E ++ WNL L + + G V GV P+L
Sbjct: 126 ----HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLEQECGVVIEGVNTPYLY 178
Query: 919 IGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQM 978
GM +T W + L I+YLH G WY +P E LE + L
Sbjct: 179 FGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAF 238
Query: 979 LESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWT 1037
L V +ISP VL + GI + Q++G+F+V FP + + G++ +E ++FAT +W
Sbjct: 239 LRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWI 298
Query: 1038 SMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
G + A + FSM+ + +I Q E+
Sbjct: 299 DYG-KMASQCSCGESTVTFSMDPFV-RIVQPES 329
>gi|239750150 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 79.7 bits (195), Expect = 2e-14
Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 31/273 (11%)
Query: 805 GVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKEPAP-----AEIEQEYWRLVEEKDC 859
GV +HK K +++ + + R A + K P A++EQ YW+
Sbjct: 81 GVFTQYHK---KKKAMRVGQYRRLANS------KKYQTPPHRNFADLEQRYWKS------ 125
Query: 860 HVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAV-PGVTIPWLN 918
H G + +G+ E ++ WNL L + + G V GV P+L
Sbjct: 126 ----HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLEQECGVVIEGVNTPYLY 178
Query: 919 IGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQM 978
GM +T W + L I+YLH G WY +P E LE + L
Sbjct: 179 FGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAF 238
Query: 979 LESNV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWT 1037
L V +ISP VL + GI + Q++G+F+V FP + + G++ +E ++FAT +W
Sbjct: 239 LRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWI 298
Query: 1038 SMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
G + A + FSM+ + +I Q E+
Sbjct: 299 DYG-KMASQCSCGESTVTFSMDPFV-RIVQPES 329
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 79.0 bits (193), Expect = 3e-14
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 10/208 (4%)
Query: 890 WNLTVLPNNTGSILRHLGAV-PGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCI 948
WN+ L + R G + GV P+L GM +T W + L I+YLH G
Sbjct: 149 WNIGSLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKS 208
Query: 949 WYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQSGQF 1007
WY IP E +LE + + L + +ISP +L K GI R Q++G+F
Sbjct: 209 WYAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEF 268
Query: 1008 VVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQ 1067
++ FP + + G++ +E+ +FAT +W G + R+ + K SM+ + +I Q
Sbjct: 269 MITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVK-ISMD-VFVRILQ 326
Query: 1068 AEAKK--ENGPTLSTISALLDELRDTEL 1093
E + + G L+ +LD R T L
Sbjct: 327 PERYELWKQGKDLT----VLDHTRPTAL 350
Score = 35.4 bits (80), Expect = 0.34
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 556 EIPVLRPSAKEFHDPLIYIESVRAQ-VEKFGMCRVIPPPDWRPECKLND 603
+I RP+ +EF D Y+ + +Q + G+ ++IPP +W+P +D
Sbjct: 14 KIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDD 62
>gi|98986459 jumonji domain containing 2A [Homo sapiens]
Length = 1064
Score = 74.3 bits (181), Expect = 7e-13
Identities = 54/231 (23%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 826 YRTARNIMSMCFSKEPAPAEIEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPF 885
+R N C + E+E++YW+ ++ + + +G+ + E
Sbjct: 97 FRKIANSDKYCTPRYSEFEELERKYWK-------NLTFNPPIYGADVNGTLYEKHVDE-- 147
Query: 886 SRHGWNLTVLPNNTGSILRHLG-AVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944
WN+ L + + G + GV P+L GM ++ W + L I+YLH G
Sbjct: 148 ----WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFG 203
Query: 945 ADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNV-MISPEVLCKEGIKVHRTVQQ 1003
WY +P E +LE + + L + +ISP +L K GI + Q+
Sbjct: 204 EPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQE 263
Query: 1004 SGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAK 1054
+G+F++ FP + + G++ +E+ +FAT +W G + R+ + K
Sbjct: 264 AGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVK 314
Score = 33.1 bits (74), Expect = 1.7
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 562 PSAKEFHDPLIYIESVRAQ-VEKFGMCRVIPPPDWRPECKLND 603
P+ +EF + YI + +Q + G+ +V+PP +W+P +D
Sbjct: 19 PTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDD 61
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 52.4 bits (124), Expect = 3e-06
Identities = 107/537 (19%), Positives = 182/537 (33%), Gaps = 94/537 (17%)
Query: 41 KNSQKRQHAEGIAGSLKTVNGLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSDF 100
K ++K+ + S + + G K PA A++ S +S+ SSD
Sbjct: 76 KKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDD 135
Query: 101 EEGPSRKRPRLQ----AQRKFAQSQP-----------NSPSTTPVKIVEPLLPPPATQIS 145
++ +K+ +Q Q K A++ P +S P K +P + P +
Sbjct: 136 DDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQ 195
Query: 146 DLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEEVEEEDDETEDVKTATNNASSS 205
+ KP R +P + N SS +D E E
Sbjct: 196 TKAPPKP----------ARAAPKIANGKAASSSSSSSSSSSSDDSEEE-----------K 234
Query: 206 CQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQKHKSKEA-TPAKEKHSDHRADSRREQ 264
+TP+K + +K+ V K K A TP ++ S + S E+
Sbjct: 235 AAATPKK------------------TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEE 276
Query: 265 ASANHPAAAPSTGSSAKGLAATHHHPPLHRS--AQDLRKQVSKVNGVTRMSSLGAGVTSA 322
P SS +A PP +S Q +K V K V SS + S
Sbjct: 277 EQKKPMKNKPGPYSSVPPPSA----PPPKKSLGTQPPKKAVEKQQPVE--SSEDSSDESD 330
Query: 323 KKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGKTESS 382
E + P+K V AT TKP P+ + S ++S
Sbjct: 331 SSSEEEKKPPTKAVVSKAT------------------TKP---PPAKKAAESSSDSSDSD 369
Query: 383 NAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTKE-VGGRQLREGLQLREGLRNSK 441
+++ + G +K++ S + P + K+ VGG Q + +
Sbjct: 370 SSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEE 429
Query: 442 RRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAP-------AERGLLNGHVKKEVPERSL 494
E + +K + K A P K+AP ++ + ++E +S
Sbjct: 430 SSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSA 489
Query: 495 ERNRPKRATAG--KSTPGRQAHGKADSASCENRSTSQPESVHKPQDSGKAEKGGGKA 549
+ +P++ G S P GKA+S++ + S E K + G KA
Sbjct: 490 VKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKA 546
Score = 31.2 bits (69), Expect = 6.5
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 36/195 (18%)
Query: 73 PASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPVKI 132
PA + + +D SS S+ SS + EE S+ + + Q+ + P+ P++
Sbjct: 458 PAKQAPQGSRDS----SSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGK 513
Query: 133 VEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPNSMVYFGSS----QDEEEVEEE 188
E S+ S +E+ L +GSP P + G+S Q+ + +
Sbjct: 514 AES---------SNSSSSDDSSEEEEEKLKGKGSPR-PQAPKANGTSALTAQNGKAAKNS 563
Query: 189 DDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQKHKSKEATP 248
++E E+ K A S S RK + + +E E Q K K TP
Sbjct: 564 EEEEEEKKKAAVVVSKSGSLKKRK---------------QNEAAKEAETPQAKKIKLQTP 608
Query: 249 ---AKEKHSDHRADS 260
K K + RA S
Sbjct: 609 NTFPKRKKGEKRASS 623
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 50.4 bits (119), Expect = 1e-05
Identities = 101/502 (20%), Positives = 181/502 (36%), Gaps = 60/502 (11%)
Query: 68 SKGLGPASEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPST 127
+K + S + +N+ D + SN E+G +K + + ++KF S+ S T
Sbjct: 304 NKDVQQESSEQKNKSTDKGEKKPDSN-------EKGERKKEKKEKTEKKFDHSK-KSEDT 355
Query: 128 TPVKIVEPLLPPPATQI---SDLSKRKPKT-----EDF-LTFLCLRGSPALPNSMVYFGS 178
VK + + S+ + K KT EDF L + G + S V+
Sbjct: 356 QKVKDEKQAKEKEVESLKLPSEKNSNKAKTVEGTKEDFSLIDSDVDGLTDITVSSVHTSD 415
Query: 179 -SQDEEEVEEE--------------DDETEDVKTATNNASSSCQSTPRKGKTHKHVHNGH 223
S EE+ EEE DDE ++ + T +S K H +VH +
Sbjct: 416 LSSFEEDTEEEVVTSDSMEEGEITSDDEEKNKQNKTKTQTSDSSEGKTKSVRHAYVHKPY 475
Query: 224 VFNGSSRSTREKEPVQKHKSKEATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGL 283
+++ S + E + + + KE+ R +R + A + S KG
Sbjct: 476 LYS-KYYSDSDDELTVEQRRQSIAKEKEERLLRRQINREKLEEKRKQKAEKTKSSKTKGQ 534
Query: 284 AATHHHPPLHRSAQDLRKQVSKVNGVTRMSSLGAGVTSAKKMREVRPSPSKTVKYTATVT 343
RS+ DL + +K + A + K R+V K +
Sbjct: 535 G---------RSSVDLEESSTK-----SLEPKAARIKEVLKERKVLEKKVALSKKRKKDS 580
Query: 344 KGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPA 403
+ +K K++ +D+K IS E + + + +
Sbjct: 581 RNVEENSKKKQQYEEDSKETLKTSEHCEKEKISSSKELKHVHAKSEPSKPARRLSESLHV 640
Query: 404 VNGLKVSGRLNPKSCTKEVGGRQLREGLQLREGLRNSKRRLEEAH-QAEKPQSPPKKMKG 462
V+ K +L + + + EG+Q R+ KR++E + E+PQ +K
Sbjct: 641 VDENKNESKLE-REHKRRTSTPVIMEGVQEETDTRDVKRQVERSEICTEEPQKQKSTLKN 699
Query: 463 AAGPAEGPGKKAPAERGLLNGHVKKEVPERSLERNRPKRATAGKSTPGRQAHGKADSASC 522
E KK +E L +KKEV + R K + K + + G C
Sbjct: 700 -----EKHLKKDDSETPHLKSLLKKEVKSSKEKPEREKTPSEDKLSVKHKYKG-----DC 749
Query: 523 ENRSTSQPESVHKPQDSGKAEK 544
+++ + E +H + K E+
Sbjct: 750 MHKTGDETE-LHSSEKGLKVEE 770
Score = 39.7 bits (91), Expect = 0.018
Identities = 101/515 (19%), Positives = 174/515 (33%), Gaps = 79/515 (15%)
Query: 38 KEFKNSQKRQHAEGIAGSLKTVNGLLGNDQSKGLGPASE------QSENEKDDASQVSST 91
KE ++R AE K+ Q LG +SE+ +D + ST
Sbjct: 822 KENNKKERRLSAEKTKAEHKSRRSSDSKIQKDSLGSKQHGITLQRRSESYSEDKCDMDST 881
Query: 92 SNDVSSSDFEE-GPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKR 150
+ D + E ++R + + K + VK+VE L AT+ +
Sbjct: 882 NMDSNLKPEEVVHKEKRRTKSLLEEKLVLKSKSKTQGKQVKVVETELQEGATK--QATTP 939
Query: 151 KPKTEDFLTFLCLRGSPALPNSMVYFGSSQDEEEVEEEDDETEDVKTATNNASSSCQSTP 210
KP E N+ Q + +VE++ E V+ ASSS ST
Sbjct: 940 KPDKEK--------------NTEENDSEKQRKSKVEDKPFEETGVEPVLETASSSAHST- 984
Query: 211 RKGKTHKH----VHNGHVFNGSSRSTR--------EKEPVQKHKSKEATPAKEKHSDHRA 258
+K +H+ + + S STR K KH SK+ E SD
Sbjct: 985 QKDSSHRAKLPLAKEKYKSDKDSTSTRLERKLSDGHKSRSLKHSSKDIKKKDENKSD--- 1041
Query: 259 DSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQVSKVNGVTRMSSLGAG 318
D ++ ++H A ++ K L+ +Q++ K K+ T + G+
Sbjct: 1042 DKDGKEVDSSHEKARGNSSLMEKKLSRRLCENRRGSLSQEMAKGEEKLAANTLSTPSGSS 1101
Query: 319 VTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGK 378
+ KK ++ P + + + +K T+ N + S + + K
Sbjct: 1102 LQRPKKSGDMTLIPEQEPMEIDSEPGVENVFEVSK------TQDNRNNNSQQDIDSENMK 1155
Query: 379 TESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTKEVGGRQLREGLQLREGLR 438
++S + ++ + SK+T PA + +G +N S
Sbjct: 1156 QKTSATVQKDELRTCTADSKATAPAYKPGRGTG-VNSNS--------------------- 1193
Query: 439 NSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGLLNGHVKKEVPERSL---- 494
E H + K +A PG+K P RG ++ E R L
Sbjct: 1194 -------EKHADHRSTLTKKMHIQSAVSKMNPGEKEPIHRGTTEVNIDSETVHRMLLSAP 1246
Query: 495 -ERNRPKRATAGKSTPGRQAHGKADSASCENRSTS 528
E +R ++ + A G A N +S
Sbjct: 1247 SENDRVQKNLKNTAAEEHVAQGDATLEHSTNLDSS 1281
Score = 38.9 bits (89), Expect = 0.031
Identities = 128/612 (20%), Positives = 223/612 (36%), Gaps = 79/612 (12%)
Query: 3 KERPKRNIIQKKYD------DSDGIPWSEERVVRKVLYLSLKEFKNSQKRQHAEGIAGSL 56
+++ K+ +KK+D D+ + ++ ++V L L KNS K + EG
Sbjct: 334 RKKEKKEKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNSNKAKTVEGTKEDF 393
Query: 57 KTVNGLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSD-FEEGPSRKRPRLQAQR 115
+ + GL + S + D +S T +V +SD EEG + ++
Sbjct: 394 SLI-----DSDVDGLTDITVSSVHTSDLSSFEEDTEEEVVTSDSMEEGEITSDDEEKNKQ 448
Query: 116 KFAQSQPNSPSTTPVKIV------EPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPAL 169
++Q + S K V +P L SK ++D LT R S A
Sbjct: 449 NKTKTQTSDSSEGKTKSVRHAYVHKPYL---------YSKYYSDSDDELTVEQRRQSIAK 499
Query: 170 PNSMVYFGSSQDEEEVEE----EDDETEDVKTATNNASS-SCQSTPRKGKTHKHVHNGHV 224
+ E++EE + ++T+ KT SS + + K K V
Sbjct: 500 EKEERLLRRQINREKLEEKRKQKAEKTKSSKTKGQGRSSVDLEESSTKSLEPKAARIKEV 559
Query: 225 FNGSSRSTREKEPVQKHKSKEATPAKE---KHSDHRADSRREQASANHPAAAPSTGSSAK 281
+ +K + K + K++ +E K + DS+ ++ H SS+K
Sbjct: 560 LK-ERKVLEKKVALSKKRKKDSRNVEENSKKKQQYEEDSKETLKTSEH--CEKEKISSSK 616
Query: 282 GLAATHHHPPLHRSAQDLRKQVSKVNGVTRMSSLG-------------AGVTSAKKMREV 328
L H + A+ L + + V+ S L GV R+V
Sbjct: 617 ELKHVHAKSEPSKPARRLSESLHVVDENKNESKLEREHKRRTSTPVIMEGVQEETDTRDV 676
Query: 329 RPSPSKTVKYTATVTKGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGKTESSNAKT-R 387
+ ++ T K T K ++ L KD H S S K + KT
Sbjct: 677 KRQVERSEICTEEPQKQKST-LKNEKHLKKDDSETPHLKSLLKKEVKSSKEKPEREKTPS 735
Query: 388 KQVLSL-----GGASKSTG------PAVNGLKVSGRLNPKSCTKEVGGRQLREGLQLREG 436
+ LS+ G TG + GLKV + +S ++ E R+
Sbjct: 736 EDKLSVKHKYKGDCMHKTGDETELHSSEKGLKVEENIQKQSQQTKLSSDDKTE----RKS 791
Query: 437 LRNSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGLLNGHVKKEVPERSLER 496
++R+L + KP S +K + KK ER L K E R
Sbjct: 792 KHRNERKLSVLGKDGKPVS-EYIIKTDENVRKENNKK---ERRLSAEKTKAEHKSRRSSD 847
Query: 497 NRPKRATAGKSTPGRQAHGKADSAS---CENRSTSQPESVHKPQDSGKAEKGGGKAGWAA 553
++ ++ + G G +++S S C+ ST+ ++ KP++ EK K +
Sbjct: 848 SKIQKDSLGSKQHGITLQRRSESYSEDKCDMDSTNMDSNL-KPEEVVHKEKRRTK---SL 903
Query: 554 MDEIPVLRPSAK 565
++E VL+ +K
Sbjct: 904 LEEKLVLKSKSK 915
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 49.7 bits (117), Expect = 2e-05
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 637 SQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAK 696
S+G ++P +GG ELDL + + +GG +V++ +W ++ + PR+ +
Sbjct: 29 SRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFA 88
Query: 697 LQEAYCQYLLSYDSL 711
L++ Y +YL Y+ +
Sbjct: 89 LKQYYLRYLEKYEKV 103
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
sapiens]
Length = 2191
Score = 48.9 bits (115), Expect = 3e-05
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 596 RPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHL---KSQGITMDELPLIGGCE 652
+PE K T + I K+ G +R + ++L + +G + LP +G
Sbjct: 981 QPESKSKKSSSSTTTGEKITKV-YELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKP 1039
Query: 653 LDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYD 709
LDL + + E+GG+ QV KKW +LA L + T+ + L++ Y QYL +++
Sbjct: 1040 LDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQYLFAFE 1095
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
sapiens]
Length = 2178
Score = 48.9 bits (115), Expect = 3e-05
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 596 RPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHL---KSQGITMDELPLIGGCE 652
+PE K T + I K+ G +R + ++L + +G + LP +G
Sbjct: 968 QPESKSKKSSSSTTTGEKITKV-YELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKP 1026
Query: 653 LDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYD 709
LDL + + E+GG+ QV KKW +LA L + T+ + L++ Y QYL +++
Sbjct: 1027 LDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQYLFAFE 1082
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 48.5 bits (114), Expect = 4e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 635 LKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRL 694
++ +G + LP +G LDL + + E+GG+ QV KKW +LA L + T+
Sbjct: 1062 MEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV-GTSSSAA 1120
Query: 695 AKLQEAYCQYLLSYD 709
+ L++ Y QYL +++
Sbjct: 1121 SSLKKQYIQYLFAFE 1135
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 47.0 bits (110), Expect = 1e-04
Identities = 87/369 (23%), Positives = 132/369 (35%), Gaps = 69/369 (18%)
Query: 202 ASSSCQSTPRKGKTHKHVHN---------GHVFNGSSRSTREKEP-VQKHKSKEATPAKE 251
+SSS P+K K K H GSS R+K+ V+KH+ +
Sbjct: 160 SSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRKKKKSVKKHRRDRSDSGSR 219
Query: 252 KHSDHRADSRR-EQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQVSKVNGVT 310
+ HR+ S + ++ N P T S + +H H + L S +
Sbjct: 220 RKRRHRSRSSKCKRKEKNKEKKRPHTESPGR---RSHRHSSGSSHSPSLSSHYSDSRSPS 276
Query: 311 RMSSL----GAGVTSAKKMREVRPSPSKTVKYTATVTKGAVTYTKAKRELVKDTKPNHH- 365
R+S G S + PSPS G + +R + H
Sbjct: 277 RLSPKHRDEGRKTGSQRSSGSRSPSPS-----------GGSGWGSPQRNGGSGQRSGAHG 325
Query: 366 -KPSSAVNHTISGKTESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTKEVGG 424
+P SA H+ K S + + R + A+ T PA S R P S + GG
Sbjct: 326 GRPGSA--HSPPDKPSSPSPRVRDKA----AAAAPTPPARGKESPSPRSAPSSQGR--GG 377
Query: 425 RQLREGLQLREGLRNSKRRLEEAHQAEKPQ-------SPPKKMK------------GAAG 465
R G R R +RR + A + + +PP+ G+
Sbjct: 378 RAAG-GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGR 436
Query: 466 PAEGPGKKAPAERGLLNGHVKKEVPERSLERNRPKRATAGKSTPGRQAHGKADSASCENR 525
A GPG + +ERG GH K+ + RP RA ++P AHG+ E +
Sbjct: 437 GAPGPGPEPGSERGH-GGHGKRA-------KERPPRARPASTSPSPGAHGRRGGP--EGK 486
Query: 526 STSQPESVH 534
S+S+ H
Sbjct: 487 SSSRSPGPH 495
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,849,421
Number of Sequences: 37866
Number of extensions: 2651258
Number of successful extensions: 14124
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 365
Number of HSP's that attempted gapping in prelim test: 12377
Number of HSP's gapped (non-prelim): 1791
length of query: 1246
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1132
effective length of database: 13,930,794
effective search space: 15769658808
effective search space used: 15769658808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.