KDM5C 401

Name: KDM5C	Sequence: fasta or formatted (1560aa)		NCBI GI: 109255243
Description: jumonji, AT rich interactive domain 1C isoform 1		Referenced in: Gene Families Histones, Related Proteins, and Modifying Enzymes PHD Finger Proteins
Other entries for this name: alt prot [1379aa] jumonji, AT rich interactive domain 1C isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.8 122 3 C cysteine 3.0 47 1 D aspartate 4.4 69 2 E glutamate 10.6 166 4 F phenylalanine 2.6 40 1 G glycine 5.7 89 2 H histidine 2.1 32 1 I isoleucine 3.1 49 2 K lysine 5.1 79 2 L leucine 11.8 184 3 M methionine 2.0 31 2 N asparagine 2.8 44 2 P proline 7.5 117 3 Q glutamine 4.6 71 3 R arginine 7.2 113 5 S serine 6.4 100 3 T threonine 3.9 61 2 V valine 5.5 86 3 W tryptophan 1.6 25 2 Y tyrosine 2.2 35 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jumonji, AT rich interactive domain 1C isoform 1 [H... KDM5D 0.838 jumonji, AT rich interactive domain 1D isoform 2 [Ho... KDM5D 0.833 jumonji, AT rich interactive domain 1D isoform 1 [H... KDM5C 0.829 jumonji, AT rich interactive domain 1C isoform 2 [H... KDM5D 0.760 jumonji, AT rich interactive domain 1D isoform 3 [H... KDM5A 0.467 retinoblastoma binding protein 2 isoform 1 KDM5A 0.467 retinoblastoma binding protein 2 isoform 2 KDM5B 0.422 jumonji, AT rich interactive domain 1B LOC100133760 0.356 PREDICTED: similar to Jumonji, AT rich interactive ... JARID2 0.038 jumonji, AT rich interactive domain 2 protein LOC390245 0.037 PREDICTED: hypothetical protein LOC390245 0.037 PREDICTED: hypothetical protein LOC390245 0.037 PREDICTED: hypothetical protein KDM4D 0.037 jumonji domain containing 2D KDM4C 0.036 jumonji domain containing 2C isoform 3 LOC100129053 0.036 PREDICTED: hypothetical protein LOC100129053 0.036 PREDICTED: hypothetical protein LOC100129053 0.036 PREDICTED: hypothetical protein KDM4C 0.036 jumonji domain containing 2C isoform 4 KDM4C 0.036 jumonji domain containing 2C isoform 2 KDM4C 0.036 jumonji domain containing 2C isoform 1 KDM4A 0.036 jumonji domain containing 2A KDM4B 0.034 jumonji domain containing 2B BAZ1B 0.015 bromodomain adjacent to zinc finger domain, 1B [Homo... CHD4 0.014 chromodomain helicase DNA binding protein 4 PHRF1 0.014 PHD and ring finger domains 1 MLL2 0.013 myeloid/lymphoid or mixed-lineage leukemia 2 DPF1 0.013 D4, zinc and double PHD fingers family 1 isoform c ... DPF1 0.013 D4, zinc and double PHD fingers family 1 isoform a ... MLL3 0.013 myeloid/lymphoid or mixed-lineage leukemia 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.