KDM5A 749

Name: KDM5A	Sequence: fasta or formatted (1641aa)		NCBI GI: 110618242
Description: retinoblastoma binding protein 2 isoform 2		Referenced in: Histones, Related Proteins, and Modifying Enzymes PHD Finger Proteins RB1 and Related Functions
Other entries for this name: alt prot [1690aa] retinoblastoma binding protein 2 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 107 4 C cysteine 2.7 45 1 D aspartate 5.0 82 2 E glutamate 10.2 167 4 F phenylalanine 3.5 57 2 G glycine 4.4 72 2 H histidine 1.8 30 2 I isoleucine 2.7 45 2 K lysine 8.5 140 4 L leucine 10.4 170 3 M methionine 2.9 48 2 N asparagine 2.6 43 2 P proline 5.5 91 3 Q glutamine 4.3 70 2 R arginine 6.1 100 3 S serine 7.8 128 4 T threonine 4.1 67 2 V valine 7.3 119 2 W tryptophan 1.5 24 1 Y tyrosine 2.2 36 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 retinoblastoma binding protein 2 isoform 2 KDM5A 0.986 retinoblastoma binding protein 2 isoform 1 KDM5C 0.450 jumonji, AT rich interactive domain 1C isoform 1 [H... KDM5B 0.450 jumonji, AT rich interactive domain 1B KDM5D 0.439 jumonji, AT rich interactive domain 1D isoform 2 [Ho... KDM5D 0.434 jumonji, AT rich interactive domain 1D isoform 1 [H... KDM5D 0.413 jumonji, AT rich interactive domain 1D isoform 3 [H... KDM5C 0.393 jumonji, AT rich interactive domain 1C isoform 2 [H... LOC100133760 0.371 PREDICTED: similar to Jumonji, AT rich interactive ... KDM4D 0.039 jumonji domain containing 2D LOC390245 0.038 PREDICTED: hypothetical protein LOC390245 0.038 PREDICTED: hypothetical protein LOC390245 0.038 PREDICTED: hypothetical protein LOC100129053 0.038 PREDICTED: hypothetical protein LOC100129053 0.038 PREDICTED: hypothetical protein LOC100129053 0.038 PREDICTED: hypothetical protein JARID2 0.037 jumonji, AT rich interactive domain 2 protein KDM4C 0.036 jumonji domain containing 2C isoform 3 KDM4A 0.036 jumonji domain containing 2A KDM4C 0.036 jumonji domain containing 2C isoform 4 KDM4C 0.036 jumonji domain containing 2C isoform 2 KDM4C 0.036 jumonji domain containing 2C isoform 1 KDM4B 0.035 jumonji domain containing 2B MLL2 0.014 myeloid/lymphoid or mixed-lineage leukemia 2 PHRF1 0.014 PHD and ring finger domains 1 MLL3 0.014 myeloid/lymphoid or mixed-lineage leukemia 3 BAZ2B 0.013 bromodomain adjacent to zinc finger domain, 2B [Homo... BAZ1B 0.013 bromodomain adjacent to zinc finger domain, 1B [Homo... DPF1 0.012 D4, zinc and double PHD fingers family 1 isoform c ... DPF1 0.012 D4, zinc and double PHD fingers family 1 isoform a ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.