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Search of human proteins with 239752628
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752628 PREDICTED: hypothetical protein XP_002347816 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752628 PREDICTED: hypothetical protein XP_002347816 [Homo ... 336 6e-93
gi|115298672 neutrophil cytosolic factor 1 [Homo sapiens] 85 3e-17
gi|55749544 SH3 multiple domains 1 [Homo sapiens] 49 2e-06
gi|63055059 SH3 and PX domains 2B [Homo sapiens] 48 3e-06
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ... 35 0.022
gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo s... 35 0.022
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 35 0.022
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens] 33 0.085
gi|163644325 MCF.2 cell line derived transforming sequence-like ... 33 0.11
gi|163644323 MCF.2 cell line derived transforming sequence-like ... 33 0.11
gi|20149528 proline-serine-threonine phosphatase interacting pro... 33 0.11
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 32 0.25
gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo s... 32 0.32
gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo s... 32 0.32
gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo sa... 32 0.32
gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo s... 32 0.32
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 31 0.42
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 31 0.42
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 31 0.42
gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo s... 31 0.55
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 31 0.55
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 31 0.55
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 30 0.72
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 30 0.72
gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Ho... 30 0.72
gi|46409258 hypothetical protein LOC57212 [Homo sapiens] 30 1.2
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 30 1.2
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 30 1.2
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 29 1.6
gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo ... 29 2.1
>gi|239752628 PREDICTED: hypothetical protein XP_002347816 [Homo
sapiens]
Length = 164
Score = 336 bits (861), Expect = 6e-93
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MRPGNAGQQRLKMPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSE 60
MRPGNAGQQRLKMPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSE
Sbjct: 1 MRPGNAGQQRLKMPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSE 60
Query: 61 MALSTGDVVEVVEKSESGQTSHLTGLLPLVLRNPQPQAPCQGSGSLAPGRTPALLGALNV 120
MALSTGDVVEVVEKSESGQTSHLTGLLPLVLRNPQPQAPCQGSGSLAPGRTPALLGALNV
Sbjct: 61 MALSTGDVVEVVEKSESGQTSHLTGLLPLVLRNPQPQAPCQGSGSLAPGRTPALLGALNV 120
Query: 121 LPTLWVAFSLSVHPVVAVGICAWQAGAGHVCVFCLDGYGTVCSL 164
LPTLWVAFSLSVHPVVAVGICAWQAGAGHVCVFCLDGYGTVCSL
Sbjct: 121 LPTLWVAFSLSVHPVVAVGICAWQAGAGHVCVFCLDGYGTVCSL 164
>gi|115298672 neutrophil cytosolic factor 1 [Homo sapiens]
Length = 390
Score = 84.7 bits (208), Expect = 3e-17
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 35 APDITGPIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
A DITGPIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG
Sbjct: 149 ATDITGPIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 192
Score = 31.2 bits (69), Expect = 0.42
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 13 MPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSEMALSTGDVVEVV 72
+PA LE P P P+ G + Y AI Y G E++L G+ VEV+
Sbjct: 205 IPASFLEPLDSPDETEDPE----PNYAG----EPYVAIKAYTAVEGDEVSLLEGEAVEVI 256
Query: 73 EKSESG----QTSHLTGLLPLVLRNPQPQAPCQGSGSLAPGRTP 112
K G + +TG P + Q Q + G P
Sbjct: 257 HKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPP 300
>gi|55749544 SH3 multiple domains 1 [Homo sapiens]
Length = 1105
Score = 48.9 bits (115), Expect = 2e-06
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 10/62 (16%)
Query: 37 DITG------PIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG----QTSHLTGL 86
D+TG P+IL+ Y ++NY+K SE++L G+VV+V+EK+ESG TS G
Sbjct: 155 DVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGW 214
Query: 87 LP 88
+P
Sbjct: 215 VP 216
Score = 32.7 bits (73), Expect = 0.14
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 28 THPALPLAPDITGPIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
T P P + GP +Y + Y+K SE++ G V+V+EK ESG
Sbjct: 800 TTPPCPTKKEWEGPAT--SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESG 848
>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
Length = 911
Score = 48.1 bits (113), Expect = 3e-06
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 41 PIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
P++L+ Y +ANY+K SE++LS G VV+++EK+ESG
Sbjct: 151 PMVLEQYVVVANYQKQESSEISLSVGQVVDIIEKNESG 188
Score = 26.9 bits (58), Expect = 7.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 GNAGQQRLKM---PAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSE 60
G+A Q+ KM P P + + P P P+ P + + Y IA ++ T
Sbjct: 333 GDAKQRSPKMRQRPPPRRDMTI-PRGLNLPKPPIPPQVE-----EEYYTIAEFQTTIPDG 386
Query: 61 MALSTGDVVEVVEKSESG 78
++ G VEV+EK+ SG
Sbjct: 387 ISFQAGLKVEVIEKNLSG 404
>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
sapiens]
Length = 671
Score = 35.4 bits (80), Expect = 0.022
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 9 QRLKMPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSEMALSTGDV 68
Q L P P L GP+ P L + T I YRA+ Y + E+ L GD
Sbjct: 581 QNLGTPGPALSHSRGPSHPLD--LGTSSPNTSQIHWTPYRAMYQYRPQNEDELELREGDR 638
Query: 69 VEVVEKSESG 78
V+V+++ + G
Sbjct: 639 VDVMQQCDDG 648
>gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo
sapiens]
Length = 329
Score = 35.4 bits (80), Expect = 0.022
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 9 QRLKMPAPVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSEMALSTGDV 68
Q L P P L GP+ P L + T I YRA+ Y + E+ L GD
Sbjct: 239 QNLGTPGPALSHSRGPSHPLD--LGTSSPNTSQIHWTPYRAMYQYRPQNEDELELREGDR 296
Query: 69 VEVVEKSESG 78
V+V+++ + G
Sbjct: 297 VDVMQQCDDG 306
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 35.4 bits (80), Expect = 0.022
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 29/114 (25%)
Query: 4 GNAGQQRLKMPAPVLEAQMGPAMPTHP----------ALPLAP-------------DITG 40
G AG + PV A G A+ A+P+AP + +
Sbjct: 768 GRAGSCPVDGDGPVTTAVAGAALAQDAFHRKASSLDSAVPIAPPPRQACSSLGPVLNESR 827
Query: 41 PIILQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG------QTSHLTGLLP 88
P++ + +R + +Y S +E+ L GD+V V +K E G Q + TGL P
Sbjct: 828 PVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFP 881
Score = 29.6 bits (65), Expect = 1.2
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 35 APDITGPIILQTYRAIANYEKTSGSEMALSTGDVV----EVVEKSESGQTSHLTGLLP-- 88
+P + G L +A+ NYE ++ S GD++ +V E G+ + + G P
Sbjct: 127 SPPVRGIPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTN 186
Query: 89 -LVLRNPQPQAPCQ 101
+ + P PQ P Q
Sbjct: 187 FVQIIKPLPQPPPQ 200
>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
Length = 1444
Score = 33.5 bits (75), Expect = 0.085
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 16 PVLEAQMGPAMPTHP--ALP---LAPDITGPIILQTYRAIANYEKTSGSEMALSTGDVVE 70
P+LE+ +GP +P+ P +LP ++ P+ + T R AN + T G+ A S
Sbjct: 684 PILESSLGPFIPSEPPGSLPCGSFPAPVSTPLEVWT-RDPAN-QSTQGASTAASR----- 736
Query: 71 VVEKSESGQTSH--LTGLLPLVL-----RNPQPQAPCQGSGSLAPGRTPA 113
EK E Q H L L PL + +PQ G G+L+P PA
Sbjct: 737 --EKPEPEQGLHPDLASLAPLEIVPFEKASPQATVEVGGPGNLSPPLPPA 784
>gi|163644325 MCF.2 cell line derived transforming sequence-like
isoform a [Homo sapiens]
Length = 1182
Score = 33.1 bits (74), Expect = 0.11
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 47 YRAIANYEKTSGSEMALSTGDVVEVVEKSESG------QTSHLTGLLPL----VLRNPQP 96
Y +A++EK + + +GDVVE+V++ + G T+ G +P V P
Sbjct: 1087 YTVVADHEKGGPDALRVRSGDVVELVQEGDEGLWYVRDPTTGKEGWVPASSLSVRLGPSG 1146
Query: 97 QAPCQGSGSLAPG 109
A C S +PG
Sbjct: 1147 SAQCLSSSESSPG 1159
>gi|163644323 MCF.2 cell line derived transforming sequence-like
isoform b [Homo sapiens]
Length = 1129
Score = 33.1 bits (74), Expect = 0.11
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 47 YRAIANYEKTSGSEMALSTGDVVEVVEKSESG------QTSHLTGLLPL----VLRNPQP 96
Y +A++EK + + +GDVVE+V++ + G T+ G +P V P
Sbjct: 1034 YTVVADHEKGGPDALRVRSGDVVELVQEGDEGLWYVRDPTTGKEGWVPASSLSVRLGPSG 1093
Query: 97 QAPCQGSGSLAPG 109
A C S +PG
Sbjct: 1094 SAQCLSSSESSPG 1106
>gi|20149528 proline-serine-threonine phosphatase interacting
protein 1 [Homo sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 45 QTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
Q YRA+ +Y + E+ LS GD++EV+ + E G
Sbjct: 362 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDG 395
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 32.0 bits (71), Expect = 0.25
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 45 QTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG------QTSHLTGLLP 88
+ YR + +Y S +E+ L GD+V V +K E G Q + TGL P
Sbjct: 826 ERYRVVVSYPPQSEAEIELKEGDIVFVHKKREDGWYKGTLQRNGRTGLFP 875
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 35 APDITGPIILQTYRAIANYEKTSGSEMALSTGDVV----EVVEKSESGQTSHLTGLLP-- 88
AP P +L +A+ +YE ++ + GD++ +V E+ G+ G LP
Sbjct: 187 APAAKNPCLLPYGKALYSYEGKEPGDLKFNKGDIIVLRRKVDEQWYHGELHGTQGFLPAS 246
Query: 89 -LVLRNPQPQAPCQG 102
+ P P AP QG
Sbjct: 247 YIQCIQPLPHAPPQG 261
>gi|78000171 sorbin and SH3 domain containing 1 isoform 7 [Homo
sapiens]
Length = 740
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 15 APVLEAQMGPAMPTHPALPLAPDITGPII-LQTYRAIANYEKTSGSEMALSTGDVVEVVE 73
+P A P P + PD + L +Y+A+ +Y + E+ L GD+V+V+E
Sbjct: 651 SPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIVDVME 710
Query: 74 KSESG 78
K + G
Sbjct: 711 KCDDG 715
>gi|78000169 sorbin and SH3 domain containing 1 isoform 6 [Homo
sapiens]
Length = 781
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 15 APVLEAQMGPAMPTHPALPLAPDITGPII-LQTYRAIANYEKTSGSEMALSTGDVVEVVE 73
+P A P P + PD + L +Y+A+ +Y + E+ L GD+V+V+E
Sbjct: 692 SPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIVDVME 751
Query: 74 KSESG 78
K + G
Sbjct: 752 KCDDG 756
>gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo
sapiens]
Length = 816
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 15 APVLEAQMGPAMPTHPALPLAPDITGPII-LQTYRAIANYEKTSGSEMALSTGDVVEVVE 73
+P A P P + PD + L +Y+A+ +Y + E+ L GD+V+V+E
Sbjct: 727 SPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIVDVME 786
Query: 74 KSESG 78
K + G
Sbjct: 787 KCDDG 791
>gi|78000160 sorbin and SH3 domain containing 1 isoform 1 [Homo
sapiens]
Length = 684
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 15 APVLEAQMGPAMPTHPALPLAPDITGPII-LQTYRAIANYEKTSGSEMALSTGDVVEVVE 73
+P A P P + PD + L +Y+A+ +Y + E+ L GD+V+V+E
Sbjct: 595 SPSRSATASPQQPQAQQRRVTPDRSQTSQDLFSYQALYSYIPQNDDELELRDGDIVDVME 654
Query: 74 KSESG 78
K + G
Sbjct: 655 KCDDG 659
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 31.2 bits (69), Expect = 0.42
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 43 ILQTYRAIANYEKTSGSEMALSTGDVVEVVEKS 75
+L YRA+ +E + EM+ ++GD+++V EK+
Sbjct: 731 VLVNYRALYPFEARNHDEMSFNSGDIIQVDEKT 763
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 31.2 bits (69), Expect = 0.42
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 43 ILQTYRAIANYEKTSGSEMALSTGDVVEVVEKS 75
+L YRA+ +E + EM+ ++GD+++V EK+
Sbjct: 758 VLVNYRALYPFEARNHDEMSFNSGDIIQVDEKT 790
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 31.2 bits (69), Expect = 0.42
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 43 ILQTYRAIANYEKTSGSEMALSTGDVVEVVEKS 75
+L YRA+ +E + EM+ ++GD+++V EK+
Sbjct: 758 VLVNYRALYPFEARNHDEMSFNSGDIIQVDEKT 790
>gi|78000167 sorbin and SH3 domain containing 1 isoform 5 [Homo
sapiens]
Length = 905
Score = 30.8 bits (68), Expect = 0.55
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 44 LQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
L +Y+A+ +Y + E+ L GD+V+V+EK + G
Sbjct: 846 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDG 880
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 30.8 bits (68), Expect = 0.55
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 44 LQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
L +Y+A+ +Y + E+ L GD+V+V+EK + G
Sbjct: 1092 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDG 1126
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 30.8 bits (68), Expect = 0.55
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 44 LQTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
L +Y+A+ +Y + E+ L GD+V+V+EK + G
Sbjct: 1233 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDG 1267
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 23 GPAMPTHPALPLAPDITGPIILQT------YRAIANYEKTSGSEMALSTGDVVEVVEKS 75
GP P P L + P LQT YR + +Y+ + E+AL GDVV+V+ K+
Sbjct: 158 GPQRP--PKLSSLAYDSPPDYLQTVSHPEVYRVLFDYQPEAPDELALRRGDVVKVLSKT 214
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 23 GPAMPTHPALPLAPDITGPIILQT------YRAIANYEKTSGSEMALSTGDVVEVVEKS 75
GP P P L + P LQT YR + +Y+ + E+AL GDVV+V+ K+
Sbjct: 47 GPQRP--PKLSSLAYDSPPDYLQTVSHPEVYRVLFDYQPEAPDELALRRGDVVKVLSKT 103
>gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Homo
sapiens]
Length = 1118
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 44 LQTYRAIANYEKTSGSEMALSTGDVVEVVEKSE---------SGQTSHLTGLLPLVLRNP 94
L + A+ YE E+ L GDVVEV+ K +GQ + G+ P P
Sbjct: 54 LPYWTAVFEYEAAGEDELTLRLGDVVEVLSKDSQVSGDEGWWTGQLNQRVGIFPSNYVTP 113
Query: 95 QP--QAPCQGSG 104
+ + CQ G
Sbjct: 114 RSAFSSRCQPGG 125
>gi|46409258 hypothetical protein LOC57212 [Homo sapiens]
Length = 201
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 88 PLVLRNPQPQAPCQGSGSLAPGRTPALLGALNVLPTLWVAFSLSVHPVVAVGICAWQAGA 147
P + R PQPQ GS S+ PA +G ++LP A S + + A A
Sbjct: 24 PPLPRQPQPQLILSGSPSIGTVPPPA-VGHTSLLPVNPPAISTTTSDLSAREDATPSAST 82
Query: 148 GHVCVF 153
GH+ VF
Sbjct: 83 GHLSVF 88
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 27 PTHPAL--PLAPDITGPIILQT--------YRAIANYEKTSGSEMALSTGDVV----EVV 72
P PA+ P + GP+ + YRA+ +E S E+ + GD+V E V
Sbjct: 715 PAKPAVQAPWSTAEKGPLTISAQENVKVVYYRALYPFESRSHDEITIQPGDIVMVKGEWV 774
Query: 73 EKSESGQTSHLTGLL 87
++S++G+ L G L
Sbjct: 775 DESQTGEPGWLGGEL 789
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query: 27 PTHPAL--PLAPDITGPIILQT--------YRAIANYEKTSGSEMALSTGDVV----EVV 72
P PA+ P + GP+ + YRA+ +E S E+ + GD+V E V
Sbjct: 715 PAKPAVQAPWSTAEKGPLTISAQENVKVVYYRALYPFESRSHDEITIQPGDIVMVKGEWV 774
Query: 73 EKSESGQTSHLTGLL 87
++S++G+ L G L
Sbjct: 775 DESQTGEPGWLGGEL 789
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 8 QQRLKMPA-PVLEAQMGPAMPTHPALPLAPDITGPIILQTYRAIANYEKTSGSEMALSTG 66
Q L++P P+ +A GP MP +P + + A+A+++ + EM G
Sbjct: 280 QWALRIPQDPIDDAMGGPVMPGNPLMAVG----------LASALADFQGSGPEEMTFRGG 329
Query: 67 DVVEVV 72
D++E++
Sbjct: 330 DLIEIL 335
>gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo
sapiens]
Length = 492
Score = 28.9 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 45 QTYRAIANYEKTSGSEMALSTGDVVEVVEKSESG 78
+ ++A+ NY + E+ L DV++V+EK + G
Sbjct: 436 EPFQALYNYTPRNEDELELRESDVIDVMEKCDDG 469
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,379,621
Number of Sequences: 37866
Number of extensions: 345580
Number of successful extensions: 1524
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 125
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.