Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751946
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo ... 266 5e-72
gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo ... 266 5e-72
gi|239757430 PREDICTED: similar to lactation elevated 1 (predict... 265 6e-72
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ... 136 5e-33
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ... 136 5e-33
gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo ... 134 2e-32
gi|239753730 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo ... 45 2e-05
gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo ... 45 2e-05
gi|14917119 keratin 34 [Homo sapiens] 42 1e-04
gi|10337581 type I hair keratin 3B [Homo sapiens] 42 1e-04
gi|14917115 keratin 31 [Homo sapiens] 42 1e-04
gi|14917117 keratin 33A [Homo sapiens] 41 2e-04
gi|143770880 laminin, beta 4 [Homo sapiens] 39 0.001
gi|4504063 golgin 97 [Homo sapiens] 37 0.003
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 37 0.005
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 37 0.005
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 37 0.005
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 35 0.013
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 35 0.017
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens] 35 0.022
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 35 0.022
gi|148277620 type I hair keratin KA35 [Homo sapiens] 34 0.029
gi|216548091 leucine zipper protein 1 [Homo sapiens] 34 0.029
gi|216548085 leucine zipper protein 1 [Homo sapiens] 34 0.029
gi|34577114 cytomatrix protein p110 [Homo sapiens] 34 0.038
gi|116488398 keratin 32 [Homo sapiens] 33 0.050
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 33 0.050
gi|49258196 syntaxin 19 [Homo sapiens] 33 0.050
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 33 0.065
>gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
sapiens]
Length = 132
Score = 266 bits (679), Expect = 5e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE
Sbjct: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
Query: 121 ISEIEDQLNEIK 132
ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132
>gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo
sapiens]
Length = 132
Score = 266 bits (679), Expect = 5e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE
Sbjct: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
Query: 121 ISEIEDQLNEIK 132
ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132
>gi|239757430 PREDICTED: similar to lactation elevated 1 (predicted)
[Homo sapiens]
Length = 132
Score = 265 bits (678), Expect = 6e-72
Identities = 131/132 (99%), Positives = 132/132 (100%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTE+GFRRWVITNSSKLKE
Sbjct: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEIGFRRWVITNSSKLKE 60
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
Query: 121 ISEIEDQLNEIK 132
ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132
>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 136 bits (342), Expect = 5e-33
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
M K Q +K NSK Q+AS PPK+ +SSPA EQ W N+FDEL E GFRR +N S+L+E
Sbjct: 1 MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
+ T+ K+V+N EK L++ +T I + EK + +LMELK ARELRE S+ SR DQ EER
Sbjct: 58 DIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEER 117
Query: 121 ISEIEDQLNEIK 132
+S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129
>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 136 bits (342), Expect = 5e-33
Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
M K Q +K NSK Q+AS PPK+ +SSPA EQ W N+FDEL E GFRR +N S+L+E
Sbjct: 1 MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
+ T+ K+V+N EK L++ +T I + EK + +LMELK ARELRE S+ SR DQ EER
Sbjct: 58 DIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEER 117
Query: 121 ISEIEDQLNEIK 132
+S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129
>gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 134 bits (338), Expect = 2e-32
Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 1 MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
M K Q +K NSK Q+AS PPK+ +SSPA EQ W N+FDEL E GFRR +N S+L+E
Sbjct: 1 MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57
Query: 61 HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
+ T+ KEV+N EK L++ +T I + EK + +LMELK AREL E S+ SR DQ EER
Sbjct: 58 DIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELCEECRSLRSRCDQLEER 117
Query: 121 ISEIEDQLNEIK 132
+S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129
>gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 57 KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
+ K VL + E++ N EK L DK++ I ++ N +++ELKN + A S+N
Sbjct: 27 EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
Query: 112 SRIDQAEERISEIEDQL 128
R++ +EERISE+ D L
Sbjct: 87 KRLNLSEERISELGDSL 103
>gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
sapiens]
Length = 113
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 57 KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
+ K VL + E++ N EK L DK++ I ++ N +++ELKN + A S+N
Sbjct: 27 EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
Query: 112 SRIDQAEERISEIEDQL 128
R++ +EERISE+ D L
Sbjct: 87 KRLNLSEERISELGDSL 103
>gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo
sapiens]
Length = 113
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 57 KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
+ K VL + E++ N EK L DK++ I ++ N +++ELKN + A S+N
Sbjct: 27 EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86
Query: 112 SRIDQAEERISEIEDQL 128
R++ +EERISE+ D L
Sbjct: 87 KRLNLSEERISELGDSL 103
>gi|14917119 keratin 34 [Homo sapiens]
Length = 436
Score = 42.4 bits (98), Expect = 1e-04
Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 35 TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNIN 91
T ++++ L E+ R +W T + +L + V++ +++++ + + +L +N+LE +
Sbjct: 270 TRSQYEALVEINRREVEQWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQ 329
Query: 92 DLMELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
L+++ L E+ +S++ Q + I+ +E QL EI+
Sbjct: 330 AQHNLRDSLENTLTESEAHYSSQLSQVQSLITNVESQLAEIR 371
>gi|10337581 type I hair keratin 3B [Homo sapiens]
Length = 404
Score = 42.4 bits (98), Expect = 1e-04
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 35 TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNI- 90
T N+++ L E R +W T + +L + V++ +++++ + + +L +N+LE +
Sbjct: 228 TRNQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEIELQ 287
Query: 91 ---NDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
N L+NT E Y +S++ Q + I+ +E QL EI+
Sbjct: 288 AQHNLRYSLENTLTESEARY---SSQLSQVQSLITNVESQLAEIR 329
>gi|14917115 keratin 31 [Homo sapiens]
Length = 416
Score = 42.0 bits (97), Expect = 1e-04
Identities = 28/132 (21%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 5 QCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFR---RWVITNSSKLKEH 61
+C+ + + ++P D N R + T ++++ L E R +W T + +L +
Sbjct: 202 RCQLGDRLNVEVDAAPTVDLN----RVLNETRSQYEALVETNRREVEQWFTTQTEELNKQ 257
Query: 62 VLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARE-LREAYTSINSRIDQAEER 120
V++ +++++ + + +L +N+LE + L+++ L E+ +S++ Q +
Sbjct: 258 VVSSSEQLQSYQAEIIELRRTVNALEIELQAQHNLRDSLENTLTESEARYSSQLSQVQSL 317
Query: 121 ISEIEDQLNEIK 132
I+ +E QL EI+
Sbjct: 318 ITNVESQLAEIR 329
>gi|14917117 keratin 33A [Homo sapiens]
Length = 404
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 35 TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNIN 91
T ++++ L E R +W T + +L + V++ +++++ + + +L +N+LE +
Sbjct: 228 TRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEIELQ 287
Query: 92 DLMELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
L+++ L E+ +S++ Q + I+ +E QL EI+
Sbjct: 288 AQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLAEIR 329
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 55 SSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMEL-KNTARELREAYTSINSR 113
S L + L + +E K++ + LDK + G+ + ++I++ E+ KN A +LRE +I ++
Sbjct: 1411 SLTLSTNALQKAQEAKSIIRNLDKQVRGLKNQIESISEQAEVSKNNALQLREKLGNIRNQ 1470
Query: 114 IDQAEERIS 122
D EE I+
Sbjct: 1471 SDSEEENIN 1479
Score = 28.5 bits (62), Expect = 1.6
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 74 KRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
K +K + +L+K +N L + + T T + + I + ++ + + E+Q E+K
Sbjct: 1557 KAAEKAANILLNLDKTLNQLQQAQITQGRANSTITQLTANITKIKKNVLQAENQTREMK 1615
>gi|4504063 golgin 97 [Homo sapiens]
Length = 767
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 52 ITNSSKLKEHVLTQCKE-VKNLEKRLDKLLTGINSLEKNINDLME--------LKNTARE 102
+T ++ KE V+T +E V +LEKRL++ L+G E+++ +L++ L++T ++
Sbjct: 282 VTAETQEKEDVITHLQEKVASLEKRLEQNLSG----EEHVQELLKEKTLAEQNLEDTRQQ 337
Query: 103 LREAYTSINSRIDQAEERISEIEDQL 128
L A +S I+ E R+ E+E L
Sbjct: 338 LLAARSSQAKAINTLETRVRELEQTL 363
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 6 CKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFD-ELTEVGFRRWVITNSSKLKEHVLT 64
C +E S + ++S + SP +EQ N +++ + + K EH L
Sbjct: 51 CHSSEASSSASSSLHARQ---SPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLE 107
Query: 65 QCKEVKNLEKRLDKLLTG----INSLEKNIN-DLMELKNTARELREAYTSINSRIDQAEE 119
+ K+ N +++ ++ L G +N+ +K +N DL +K++ R E + R+ ++ +
Sbjct: 108 EEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQ 167
Query: 120 RISEIE 125
RI E+E
Sbjct: 168 RIGELE 173
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 65 QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEI 124
Q + ++ E+RL + + EK + L E ++ EL+ N Q E+++ E+
Sbjct: 331 QKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHE----NKSALQLEQQVKEL 386
Query: 125 EDQLNEI 131
+++L ++
Sbjct: 387 QEKLGQV 393
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 6 CKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFD-ELTEVGFRRWVITNSSKLKEHVLT 64
C +E S + ++S + SP +EQ N +++ + + K EH L
Sbjct: 51 CHSSEASSSASSSLHARQ---SPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLE 107
Query: 65 QCKEVKNLEKRLDKLLTG----INSLEKNIN-DLMELKNTARELREAYTSINSRIDQAEE 119
+ K+ N +++ ++ L G +N+ +K +N DL +K++ R E + R+ ++ +
Sbjct: 108 EEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQ 167
Query: 120 RISEIE 125
RI E+E
Sbjct: 168 RIGELE 173
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 65 QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEI 124
Q + ++ E+RL + + EK + L E ++ EL+ N Q E+++ E+
Sbjct: 331 QKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHE----NKSALQLEQQVKEL 386
Query: 125 EDQLNEI 131
+++L ++
Sbjct: 387 QEKLGQV 393
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 37.0 bits (84), Expect = 0.005
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 43 TEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARE 102
TE R + T KE LT+ E E ++ I +++ I +L + E
Sbjct: 589 TEEKKHRTLHTEELTSKEADLTEETE----ENLRSSVINSIREIKEEIGNLKSSHSGVLE 644
Query: 103 LREAYTSINSRIDQAEERISEIEDQLNE 130
+ + ++SR+D EERI +EDQ+ E
Sbjct: 645 IENSVDDLSSRMDILEERIDSLEDQIEE 672
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 35.4 bits (80), Expect = 0.013
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 53 TNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSL-EKNINDLMELKNTARELREAYTSIN 111
+NSSKL+ + +C ++ LEK+L++ + +S+ KN EL ++R T+IN
Sbjct: 683 SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIN 742
Query: 112 S 112
+
Sbjct: 743 T 743
Score = 28.1 bits (61), Expect = 2.1
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 43 TEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLD-KLLTGINSLEKNINDLMELKNTAR 101
TE+ + + KL+ T+ E + L+ +L L+ + L EL++ +
Sbjct: 1032 TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ 1091
Query: 102 E----LREAYTSINSRIDQAEERISEIEDQLNEI 131
+ L E YT+I + E EIED+ E+
Sbjct: 1092 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEL 1125
Score = 26.6 bits (57), Expect = 6.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 78 KLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
KL + + + ++ + D L N REL+ + N R+D ++ I +L ++
Sbjct: 460 KLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLE 514
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 35.0 bits (79), Expect = 0.017
Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 58 LKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLME----LKNTARELREAYTSINSR 113
L+ H+ T +++ ++ L+K+ T ++ + + D E L++ +E +E Y S+ +
Sbjct: 665 LQNHLDTAQNALQDKQQELNKITTQLDQVTAKLQDKQEHCSQLESHLKEYKEKYLSLEQK 724
Query: 114 IDQAEERISEIEDQLNEIK 132
++ E +I ++E E+K
Sbjct: 725 TEELEGQIKKLEADSLEVK 743
Score = 28.1 bits (61), Expect = 2.1
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 30 REQDWTGNEFDELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKN 89
+E+ W E + E+ + + +K V E+++LE++L++ T N K
Sbjct: 100 KEEKWYSEELKK--ELEKYQGLQQQEAKPDGLVTDSSAELQSLEQQLEEAQTE-NFNIKQ 156
Query: 90 INDLMELKNTARELREAYTSINSRIDQ-------AEERISEIEDQLNE 130
+ DL E K A +L I S+ D+ AE++++ + ++LN+
Sbjct: 157 MKDLFEQK--AAQLATEIADIKSKYDEERSLREAAEQKVTRLTEELNK 202
Score = 27.3 bits (59), Expect = 3.6
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 66 CKEVKN-----LEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
CKE+K+ +E L + SLEK +LK ++E + + Q E+
Sbjct: 894 CKELKHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKE 953
Query: 121 ISEIEDQLNEIK 132
+++ +NE+K
Sbjct: 954 EQQLQGNINELK 965
Score = 26.6 bits (57), Expect = 6.1
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 60 EHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDL-MELKNTARELREAYTSINSRIDQAE 118
+H+ + K+++ ++R +K G+ L+ IN L +L T R+L EA+ + + +
Sbjct: 389 QHLKAEFKQLQ--QQREEKEQHGLQ-LQSEINQLHSKLLETERQLGEAHGRLKEQRQLSS 445
Query: 119 ERISEIEDQLNEIK 132
E++ + E Q+ +++
Sbjct: 446 EKLMDKEQQVADLQ 459
>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
Length = 4471
Score = 34.7 bits (78), Expect = 0.022
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 59 KEHVLTQCKEVKNLEKRL-DKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQA 117
+EH++ + E KNL K L D LL + + N+ D ++L +T E + T ++ ++ A
Sbjct: 3575 REHLIQETSENKNLLKDLEDSLLRELATSTGNMLDNVDLVHTLEETKSKATEVSEKLKLA 3634
Query: 118 EERISEIE 125
E+ +I+
Sbjct: 3635 EKTALDID 3642
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 38 EFDELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELK 97
+FD + +V F+R + LK+ V+ +C E N L + G+ +K++ND ++ K
Sbjct: 1506 KFDNIDKV-FKRIM---GETLKDPVIKRCCEAPNRLSDLQNVSEGLEKCQKSLNDYLDSK 1561
Query: 98 NTA 100
A
Sbjct: 1562 RNA 1564
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 48 RRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAY 107
+ WVI+ L E +E+ NL + ++ L + + + DL + T E+R
Sbjct: 1063 KSWVISLGKLLNESAK---EELYNLHEEMEHLAKNLRKIPNTLEDLKFVLATIAEIRSKS 1119
Query: 108 TSINSRIDQAEER 120
+ R +ER
Sbjct: 1120 LVMELRYRDVQER 1132
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 34.7 bits (78), Expect = 0.022
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 8 KAENSKNQNASSPPKDHNSSPAREQDWTGNEFDEL-TEVGFRRWVITNSSKLKEHVLTQC 66
K EN + Q S + HN +E +G E + EV R+ +++ + KL + + +
Sbjct: 1502 KEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVEL 1561
Query: 67 KEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIED 126
K + L++ +L K + +L + E++ + I+ + S +++
Sbjct: 1562 KAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLKE 1621
Query: 127 QL 128
QL
Sbjct: 1622 QL 1623
>gi|148277620 type I hair keratin KA35 [Homo sapiens]
Length = 491
Score = 34.3 bits (77), Expect = 0.029
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 5 QCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKEHVLT 64
QC+ E + ++P D N +E E +W T +L + V+T
Sbjct: 242 QCQLGERLDIEVTAAPSADLNQV-LQEMRCQYEPIMETNRKDVEQWFNTQIEELNQQVVT 300
Query: 65 QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTAR-ELREAYTSINSRIDQAEERISE 123
++ + +K + +L +N+LE + ++++ L E + + Q + I
Sbjct: 301 SSQQQQCCQKEIIELRRSVNTLEVELQAQHRMRDSQECILTETEARYTALLTQIQSLIDN 360
Query: 124 IEDQLNEIK 132
+E QL EI+
Sbjct: 361 LEAQLAEIR 369
>gi|216548091 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 34.3 bits (77), Expect = 0.029
Identities = 17/65 (26%), Positives = 40/65 (61%)
Query: 68 EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQ 127
++++L +RLD+L +L+K ++L++L++ + + +S+ + I+ +R+ IE +
Sbjct: 19 KLQSLSRRLDELEEATKNLQKAEDELLDLQDKVIQAEGSNSSMLAEIEVLRQRVLRIEGK 78
Query: 128 LNEIK 132
EIK
Sbjct: 79 DEEIK 83
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 68 EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIE 125
E++ L+KR+ +L + ++ ND +L + E R I+S ++ ++ E+E
Sbjct: 109 EIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEMLRVKVKELE 166
>gi|216548085 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 34.3 bits (77), Expect = 0.029
Identities = 17/65 (26%), Positives = 40/65 (61%)
Query: 68 EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQ 127
++++L +RLD+L +L+K ++L++L++ + + +S+ + I+ +R+ IE +
Sbjct: 19 KLQSLSRRLDELEEATKNLQKAEDELLDLQDKVIQAEGSNSSMLAEIEVLRQRVLRIEGK 78
Query: 128 LNEIK 132
EIK
Sbjct: 79 DEEIK 83
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 68 EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIE 125
E++ L+KR+ +L + ++ ND +L + E R I+S ++ ++ E+E
Sbjct: 109 EIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEMLRVKVKELE 166
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 33.9 bits (76), Expect = 0.038
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 41 ELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMEL---K 97
ELTE FRR + + KE L + K ++ +E R++ +N+ +++I L+E+ K
Sbjct: 257 ELTEENFRRLQAEHDRQAKELFLLR-KTLEEMELRIETQKQTLNARDESIKKLLEMLQSK 315
Query: 98 NTARELREAYTSINSRIDQAEERISEIEDQLNE 130
+ E R+ +AE ++S +E L++
Sbjct: 316 GLPSKSLEDDNERTRRMAEAESQVSHLEVILDQ 348
>gi|116488398 keratin 32 [Homo sapiens]
Length = 448
Score = 33.5 bits (75), Expect = 0.050
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 38 EFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLM 94
+++ + E R W +L + V T ++++N + + L +N+LE +
Sbjct: 271 QYEAMVEANRRDVEEWFNMQMEELNQQVATSSEQLQNYQSDIIDLRRTVNTLEIELQAQH 330
Query: 95 ELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
L+++ L E+ +S++ Q + I+ +E QL EI+
Sbjct: 331 SLRDSLENTLTESEARYSSQLAQMQCMITNVEAQLAEIR 369
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 33.5 bits (75), Expect = 0.050
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 57 KLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQ 116
+L+EH C++ + L ++ ++L L + L E + RE E R+ +
Sbjct: 249 RLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLRE 308
Query: 117 AEERISEIEDQLNE 130
EER+ E E++L E
Sbjct: 309 QEERLCEQEERLRE 322
Score = 28.5 bits (62), Expect = 1.6
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 57 KLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQ 116
+L+E C++ + L + ++L L + L E + E E R+ +
Sbjct: 235 RLREQEERLCEQEERLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLRE 294
Query: 117 AEERISEIEDQLNE 130
EER+ E E++L E
Sbjct: 295 QEERLCEQEERLRE 308
>gi|49258196 syntaxin 19 [Homo sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.050
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 49 RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYT 108
+W + N S L E +T+ + ++ +E+ +L+ L+N ++LR+ +
Sbjct: 190 KWEVFNESLLTEINITKAQ---------------LSEIEQRHKELVNLENQIKDLRDLFI 234
Query: 109 SINSRIDQAEERISEIEDQLNEIK 132
I+ +++ E I+ IE +N K
Sbjct: 235 QISLLVEEQGESINNIEMTVNSTK 258
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 33.1 bits (74), Expect = 0.065
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 60 EHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDL----MELKNTARELREAYTSINSRID 115
EH+ T +E KNL++ + L + S K I++L +L+ EL+ A + ++
Sbjct: 1493 EHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLE 1552
Query: 116 QAEERISEIEDQLNEIK 132
E +I + + N+IK
Sbjct: 1553 HEEGKILRAQLEFNQIK 1569
Score = 30.0 bits (66), Expect = 0.55
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 67 KEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIED 126
K + L+ +DKL + + ++ + E NT + + +D+AEER E
Sbjct: 1859 KNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLS---KFRKVQHELDEAEERADIAES 1915
Query: 127 QLNEIK 132
Q+N+++
Sbjct: 1916 QVNKLR 1921
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,647,250
Number of Sequences: 37866
Number of extensions: 181812
Number of successful extensions: 1534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 503
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.