Guide to the Human Genome
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Name: KRT39 Sequence: fasta or formatted (491aa) NCBI GI: 148277620
Description:

type I hair keratin KA35

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         26           2
 C cysteine            5.5         27           2
 D aspartate           3.7         18           2
 E glutamate          10.2         50           2
 F phenylalanine       1.0          5           1
 G glycine             3.1         15           2
 H histidine           1.2          6           1
 I isoleucine          6.3         31           2
 K lysine              5.5         27           1
 L leucine            10.6         52           2
 M methionine          1.4          7           1
 N asparagine          6.1         30           2
 P proline             4.3         21           1
 Q glutamine           7.5         37           4
 R arginine            5.5         27           2
 S serine              8.1         40           3
 T threonine           6.7         33           3
 V valine              4.5         22           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   type I hair keratin KA35 
KRT36                 0.481   keratin 36 
KRT32                 0.456   keratin 32 
KRT35                 0.451   keratin 35 
KRT31                 0.451   keratin 31 
KRT33A                0.444   keratin 33A 
KRT34                 0.436   keratin 34 
KRT33B                0.434   type I hair keratin 3B 
KRT40                 0.421   type I hair keratin KA36 
KRT38                 0.381   keratin 38 
KRT37                 0.372   keratin 37 
KRT17                 0.313   keratin 17 
KRT14                 0.311   keratin 14 
KRT15                 0.304   keratin 15 
KRT19                 0.301   keratin 19 
KRT13                 0.297   keratin 13 isoform a 
KRT16                 0.297   keratin 16 
KRT13                 0.294   keratin 13 isoform b 
KRT10                 0.272   keratin 10 
KRT12                 0.266   keratin 12 
KRT27                 0.259   keratin 27 
KRT24                 0.257   keratin 24 
KRT20                 0.256   keratin 20 
KRT28                 0.254   keratin 25D 
KRT25                 0.254   keratin 25 
KRT9                  0.253   keratin 9 
KRT18                 0.244   keratin 18 
KRT18                 0.244   keratin 18 
KRT26                 0.230   keratin 26 
KRT23                 0.206   keratin 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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