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Search of human proteins with 239751558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
(771 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens] 1583 0.0
gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens] 1583 0.0
gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens] 1494 0.0
gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G (... 100 9e-21
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 55 2e-07
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 39 0.024
gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo ... 38 0.031
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 38 0.041
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 38 0.041
gi|148806881 hypothetical protein LOC57608 [Homo sapiens] 37 0.069
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 37 0.091
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.15
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 35 0.20
gi|24497554 homeobox A13 [Homo sapiens] 35 0.20
gi|150170670 piccolo isoform 2 [Homo sapiens] 35 0.26
gi|150378539 piccolo isoform 1 [Homo sapiens] 35 0.26
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 35 0.26
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.26
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 35 0.34
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 35 0.34
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 35 0.34
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 35 0.34
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 35 0.34
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 35 0.34
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 35 0.34
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 35 0.34
gi|28872814 semaphorin 4G [Homo sapiens] 35 0.34
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 34 0.45
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 34 0.45
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.59
>gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 1583 bits (4098), Expect = 0.0
Identities = 771/771 (100%), Positives = 771/771 (100%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP
Sbjct: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
Query: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD
Sbjct: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
Query: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS
Sbjct: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
Query: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK
Sbjct: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
Query: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG
Sbjct: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
Query: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK
Sbjct: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
Query: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY
Sbjct: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
Query: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK
Sbjct: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
Query: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP
Sbjct: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
Query: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP
Sbjct: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
Query: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE
Sbjct: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
>gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 1583 bits (4098), Expect = 0.0
Identities = 771/771 (100%), Positives = 771/771 (100%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP
Sbjct: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
Query: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD
Sbjct: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
Query: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS
Sbjct: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
Query: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK
Sbjct: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
Query: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG
Sbjct: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
Query: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK
Sbjct: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
Query: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY
Sbjct: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
Query: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK
Sbjct: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
Query: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP
Sbjct: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
Query: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP
Sbjct: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
Query: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE
Sbjct: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
>gi|239757046 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 737
Score = 1494 bits (3868), Expect = 0.0
Identities = 733/771 (95%), Positives = 733/771 (95%), Gaps = 34/771 (4%)
Query: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA
Sbjct: 1 MHIQLLSSHPPMPSPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLA 60
Query: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL
Sbjct: 61 ALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSL 120
Query: 121 SSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGP 180
SSSFSNFQEKTAR FKGTAPAEARGP
Sbjct: 121 SSSFSNFQEKTAR----------------------------------RFKGTAPAEARGP 146
Query: 181 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 240
GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD
Sbjct: 147 GGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRD 206
Query: 241 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 300
LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS
Sbjct: 207 LLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQPCLWVPS 266
Query: 301 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 360
GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK
Sbjct: 267 GGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLLRFKTAPTAAEITGHAK 326
Query: 361 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 420
ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG
Sbjct: 327 ADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDRRPIKPEDMDKYAKPATTG 386
Query: 421 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 480
LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK
Sbjct: 387 LGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGSGWSREDYKSVPLK 446
Query: 481 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 540
TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY
Sbjct: 447 TEDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVLWPQYWKMQLMTISGY 506
Query: 541 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 600
RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK
Sbjct: 507 RGPSVYGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGEFSASATAAIGKK 566
Query: 601 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 660
ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP
Sbjct: 567 ASMSLLAVSVFSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDTGEGGEGPCASACP 626
Query: 661 NRSQRTELKPRPLTPEVPDDHYGTAQPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 720
NRSQR ELKPRPL PEVPDDHYGTA PMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP
Sbjct: 627 NRSQRPELKPRPLHPEVPDDHYGTAHPMTHSGVVHLGTHMKHIQDLPLGKKEKSTYLLAP 686
Query: 721 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 771
SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE
Sbjct: 687 SRHWKHVPEDDEDLTIESALHLSPALKHCHPCHTLPGSIALPYGACCCQGE 737
>gi|115529475 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) [Homo sapiens]
Length = 223
Score = 99.8 bits (247), Expect = 9e-21
Identities = 52/63 (82%), Positives = 53/63 (84%), Gaps = 4/63 (6%)
Query: 473 DYKSVPLKT-EDEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVL---WPQ 528
DYK VPLKT E EEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKV W
Sbjct: 42 DYKPVPLKTGEGEEYMLALKQELRETMKRMPYFIETPEERQDIERYSKRYMKVYKEEWIP 101
Query: 529 YWK 531
W+
Sbjct: 102 DWR 104
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 55.1 bits (131), Expect = 2e-07
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 473 DYKSVPLKTEDE-EYMLALKQELRETMKRMPYFIETPEERQDIERYSKRY 521
+++ VPL + +E EY+LALKQELR M+++PYFI ++D+ERYS +Y
Sbjct: 45 EFRPVPLPSGEEGEYVLALKQELRGAMRQLPYFIRPAVPKRDVERYSDKY 94
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 38.5 bits (88), Expect = 0.024
Identities = 34/86 (39%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 147 LRARASPAAPLS-ESRGGAAPAGFKGTA--PA-------------EARGPGGRRFSGLLT 190
LRA A PL+ R GAAP G G A PA EA PG RFSGL
Sbjct: 93 LRAPARDPVPLAGRQRAGAAPRGPGGPARTPAVRAGRRAADGPGEEAPAPGRARFSGL-- 150
Query: 191 PSAARPDPPAPPAQAWDRRGSVTPTG 216
++P P P A RRG P G
Sbjct: 151 ---SQPRGPQPRAAVRPRRGGALPRG 173
>gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo
sapiens]
Length = 283
Score = 38.1 bits (87), Expect = 0.031
Identities = 46/147 (31%), Positives = 58/147 (39%), Gaps = 18/147 (12%)
Query: 68 PMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLSSSFSNF 127
P R PPD S P +AAR C T K+C L P L + +SN
Sbjct: 129 PFGRRGTPPDVRTSNSGAPTASAAR--PPCSITT--KNCCKGAWSASRLRPRLRADWSNT 184
Query: 128 QEKT----ARILASSFAAGVRRSLRA-RASPAAPLSESRGGA--APAGFKGTAPAEA-RG 179
+ R+ SS + A RA PA P ++ RG A APA + A +G
Sbjct: 185 LMLSFIMCIRLARSSIIWHLEAPTCARRAVPAVPAAQPRGRAQRAPAARRQVPGGPACQG 244
Query: 180 PGGRRFSGLLTPSAARPDPPAPPAQAW 206
GRR P+ RP P P AW
Sbjct: 245 QDGRR------PALGRPRPRCAPQVAW 265
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 37.7 bits (86), Expect = 0.041
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 410 MDKYAKPATTGLGHKNKKV--THKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGS 467
+D + P + G GH +V T + +ED + E EE+ + V+ G G+
Sbjct: 24 LDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREE---EEEDGEEEEVEAVGAGA 80
Query: 468 GWSR----EDYKSVPLKT--EDEEYMLALKQELRETMKRMPYFIETPEERQDIERY 517
GW EDY+ + E+EE + R + M Y E +E +D++ Y
Sbjct: 81 GWDTPMRDEDYEGDMEEEVEEEEEGVFWTSGMSRSSWDNMDYVWEEEDEEEDLDYY 136
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 37.7 bits (86), Expect = 0.041
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 410 MDKYAKPATTGLGHKNKKV--THKFSPPKDEDNTLIRAERILSREEESQGLTVKITGPGS 467
+D + P + G GH +V T + +ED + E EE+ + V+ G G+
Sbjct: 24 LDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELDREE---EEEDGEEEEVEAVGAGA 80
Query: 468 GWSR----EDYKSVPLKT--EDEEYMLALKQELRETMKRMPYFIETPEERQDIERY 517
GW EDY+ + E+EE + R + M Y E +E +D++ Y
Sbjct: 81 GWDTPMRDEDYEGDMEEEVEEEEEGVFWTSGMSRSSWDNMDYVWEEEDEEEDLDYY 136
>gi|148806881 hypothetical protein LOC57608 [Homo sapiens]
Length = 1359
Score = 37.0 bits (84), Expect = 0.069
Identities = 80/394 (20%), Positives = 137/394 (34%), Gaps = 79/394 (20%)
Query: 109 LRSHREVLDPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRG-GAAPA 167
L+ HR L PS +S+FS + V ++ +A + P + G GA P
Sbjct: 750 LKGHRS-LSPSSNSAFSRT------------SLSVDQAPTPKAGRSQPCVDVHGLGAHPG 796
Query: 168 GFKGTAPAEARGP-GGRRFSG--LLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVS 224
+ E GP ++ G LL P + RP W+L+S
Sbjct: 797 PKREVVKGEPTGPCNSKQLFGQFLLKPVSRRP-----------------------WDLIS 833
Query: 225 RVHGYQKEVVFTRNRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTL 284
++ + KE+ S + EE + E + + + + D+ R + +
Sbjct: 834 QLESFNKELQEEEESSSSSSSSSSSSEESEAE-----PQQENRAHCRQEDVGFRGNSPEM 888
Query: 285 TRLPARDCQPCLWVPSGGLSAGEPRRLLRQSVREKEEALGYCHLVQRAYKRKAAPVPGLL 344
P QP +WVP + +S R + ++ + +Q + R P PG
Sbjct: 889 RVEP----QPRMWVPESPVC---------RSGRGESKSESWSEELQPGHPRAWPPSPGRF 935
Query: 345 RFKTAPTA--AEITGHAKADNISVFVQCVFEESGQDSKGVLEILMLERWNFILAKDSGDR 402
R + A G A+ + V +E V ++ S D
Sbjct: 936 RVEEGGGAPFCSADGSTSAEKRHLEVSNGMDELAGSPFPVTR----------MSSRSSDA 985
Query: 403 RPIKPEDMDKYAKPATTGLGHKNKKVTHKFSPPKDEDNTLIRAERILSREEESQGLTVKI 462
+P+ + PA ++ K+T FS K + + S E GL + +
Sbjct: 986 KPLPA------SYPAEPREPQESPKITSAFSSVKPSEAV---PRKFDSGGERGAGLPLSL 1036
Query: 463 TGPGSGWSREDYKSVPLKTEDEEYMLALKQELRE 496
+ G S D +SV L E+ L+ L E
Sbjct: 1037 SNKNRGLSAPDLRSVGLTPGQEQGASELEGSLGE 1070
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 36.6 bits (83), Expect = 0.091
Identities = 36/102 (35%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 140 AAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGPGG---RRFSG--------- 187
AAG R +R A P S + AG GT ARG GG +RFS
Sbjct: 225 AAGARAQVRGSEKRACPGSTLPPSSVLAGCVGT---RARGHGGVQRQRFSAPSSHSTGAR 281
Query: 188 -LLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHG 228
L TPS ARP PAP A R G+ + +LV G
Sbjct: 282 TLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRG 323
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 35.8 bits (81), Expect = 0.15
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 144 RRSLRARASPAAP----LSESRGGAAPAGFKGTAPAEARGPGGRRFSGLLTPSAARPDPP 199
RR+ +P AP L GG AP G GTAP G G +G + + +P PP
Sbjct: 1119 RRAPETGGAPRAPGAGRLDLGSGGRAPVG-TGTAPGGGPGSGVDAKAGWVDNTRPQPPPP 1177
Query: 200 --APPAQAWDRRGSVTPTGA 217
PP +A RR P A
Sbjct: 1178 PLPPPPEAQPRRLEPAPPRA 1197
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 35.4 bits (80), Expect = 0.20
Identities = 59/227 (25%), Positives = 86/227 (37%), Gaps = 22/227 (9%)
Query: 7 SSHPPMP-SPQHSFSKCFSCPALADAEDVKMSNMPALPSKAPASQDDLPRCFYLAALDSS 65
SS P P SP + FS ++ +++ P PS +P S P +++ S
Sbjct: 804 SSSPGTPLSPGNPFSPG---TPISPGPIFPITSPPCHPSPSPFS----PISSQVSSNPSP 856
Query: 66 TP---PMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTSGKDCTLLRSHREVLDPSLS- 121
P P+ + P+F PLSQ P + S T C+ + P S
Sbjct: 857 HPTSSPLPFSSSTPEFPVPLSQCPWSSLPTTSPPTFSPT----CSQVTLSSPFFPPCPST 912
Query: 122 SSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGPG 181
SSF + LAS+F+ V ++ SP+ L A P+ PG
Sbjct: 913 SSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQSPPAPPSPLPSLPLPPPVAPG 972
Query: 182 GRRFSGLLT---PSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSR 225
G+ T S A P PPA P R ++ G P +LV R
Sbjct: 973 GQESPSPHTAEVESEASP-PPARPLPGEARLAPISEEGKP--QLVGR 1016
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 35.4 bits (80), Expect = 0.20
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 118 PSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEA 177
P+ +++ NF A A++ AA R+L A +P AP + S +AP +A A A
Sbjct: 61 PAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 120
Query: 178 RGPGGRRFSGLLTPSAARPDPPAP 201
+ S+ P P P
Sbjct: 121 AAAAAAAAAAAAASSSGGPGPAGP 144
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 102 SGKDCTLLRSHREVLDPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESR 161
+ C L +H L P +S++S+ + A++ AA A A+ AA + S
Sbjct: 83 AANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAA------AAAAAAAAAASSS 136
Query: 162 GGAAPAGFKGTAPAEARGP 180
GG PAG G A+ P
Sbjct: 137 GGPGPAGPAGAEAAKQCSP 155
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.0 bits (79), Expect = 0.26
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 41/180 (22%)
Query: 43 PSKAPASQDDLPRCFYLAALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTS 102
P + P QD P+ SS P K +++PP +P+ Q P + T
Sbjct: 225 PGRDPLQQDGTPKSI------SSQQPEKIKSQPPGTGKPI-QGP------------TQTP 265
Query: 103 GKDCTLLRSHREVLDPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRG 162
D L R+ P Q K A I+ V+ SL + + P P+ +
Sbjct: 266 QTDHAKLPLQRDASRP---------QTKQADIVRGE---SVKPSLPSPSKP--PIQQPTP 311
Query: 163 GAAPA---GFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPI 219
G PA G + + P A+ P + SGL P A +P PP Q G+ P P+
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPA--QPSGLTKPLAQQPGTVKPPVQP---PGTTKPPAQPL 366
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 35.0 bits (79), Expect = 0.26
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 41/180 (22%)
Query: 43 PSKAPASQDDLPRCFYLAALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTS 102
P + P QD P+ SS P K +++PP +P+ Q P + T
Sbjct: 225 PGRDPLQQDGTPKSI------SSQQPEKIKSQPPGTGKPI-QGP------------TQTP 265
Query: 103 GKDCTLLRSHREVLDPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRG 162
D L R+ P Q K A I+ V+ SL + + P P+ +
Sbjct: 266 QTDHAKLPLQRDASRP---------QTKQADIVRGE---SVKPSLPSPSKP--PIQQPTP 311
Query: 163 GAAPA---GFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRGSVTPTGAPI 219
G PA G + + P A+ P + SGL P A +P PP Q G+ P P+
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPA--QPSGLTKPLAQQPGTVKPPVQP---PGTTKPPAQPL 366
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 35.0 bits (79), Expect = 0.26
Identities = 31/77 (40%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 144 RRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGPGGRRFS-----GLLTPSAARPDP 198
RR A A+ A P RGG +PAG G G GGRR S L P A RPD
Sbjct: 57 RRDEAAAAAGAGP----RGGRSPAGASG----HRAGAGGRRESQKERKSLPAPVAQRPDS 108
Query: 199 P-----APPAQAWDRRG 210
P AP + RRG
Sbjct: 109 PGGGLQAPGQKRTPRRG 125
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.0 bits (79), Expect = 0.26
Identities = 48/168 (28%), Positives = 61/168 (36%), Gaps = 20/168 (11%)
Query: 43 PSKAPASQDDLPRCFYLAALDSSTPPMKNRAKPPDFSEPLSQLPDLTAARIFESCMSDTS 102
P P+S PR AA + TPP + + P S P SQ AA +
Sbjct: 334 PPDKPSSPS--PRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAA--------GGA 383
Query: 103 GKDCTLLRSHREVLDPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRG 162
G+ R R SS S + + R + G RSL +RA ++ RG
Sbjct: 384 GRRRRRRRRRRRS-----RSSASAPRRRGRRRPRPAPPRGSSRSL-SRARSSSDSGSGRG 437
Query: 163 GAAPAGFKGTAPAEARGPGGRRFSGLLTPSAARPDPPAPPAQAWDRRG 210
P G P RG GG P ARP +P A RRG
Sbjct: 438 APGP----GPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRG 481
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 34.7 bits (78), Expect = 0.34
Identities = 49/207 (23%), Positives = 71/207 (34%), Gaps = 47/207 (22%)
Query: 119 SLSSSFSNFQEKTARILASSFAAG-----VRRSLRARASPA---APLSESRGGAAPAGFK 170
SLS + Q R L SS +AG +RR AR + A +++ GG +
Sbjct: 80 SLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQ 139
Query: 171 GTAPAEARG------PGGRRFSGLLTPSAARPDPPAPP-----------------AQAWD 207
G P RG P R L P RP PPAP A+
Sbjct: 140 GLGPPRGRGLSTAPPPSSLR----LLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
Query: 208 RRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGV---------CALEEGKDELG 258
+G+ AP+ + Q + R +L+ + + C L G+ +G
Sbjct: 196 EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVG 255
Query: 259 LQLKEGQEKEEMKCHDI---RPRPSQR 282
L E Q E + +P P R
Sbjct: 256 AALTEEQAAGEAAARGLWRRKPAPCPR 282
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 34.7 bits (78), Expect = 0.34
Identities = 49/207 (23%), Positives = 71/207 (34%), Gaps = 47/207 (22%)
Query: 119 SLSSSFSNFQEKTARILASSFAAG-----VRRSLRARASPA---APLSESRGGAAPAGFK 170
SLS + Q R L SS +AG +RR AR + A +++ GG +
Sbjct: 80 SLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQ 139
Query: 171 GTAPAEARG------PGGRRFSGLLTPSAARPDPPAPP-----------------AQAWD 207
G P RG P R L P RP PPAP A+
Sbjct: 140 GLGPPRGRGLSTAPPPSSLR----LLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
Query: 208 RRGSVTPTGAPIWELVSRVHGYQKEVVFTRNRDLLSKLGV---------CALEEGKDELG 258
+G+ AP+ + Q + R +L+ + + C L G+ +G
Sbjct: 196 EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVG 255
Query: 259 LQLKEGQEKEEMKCHDI---RPRPSQR 282
L E Q E + +P P R
Sbjct: 256 AALTEEQAAGEAAARGLWRRKPAPCPR 282
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 266 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 323
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 324 AQAGKREEDSQSSSEESDSEEEAPAQA 350
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 343 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 400
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 401 AQAGKREEDSQSSSEESDSEEEAPAQA 427
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 343 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 400
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 401 AQAGKREEDSQSSSEESDSEEEAPAQA 427
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 266 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 323
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 324 AQAGKREEDSQSSSEESDSEEEAPAQA 350
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 343 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 400
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 401 AQAGKREEDSQSSSEESDSEEEAPAQA 427
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 34.7 bits (78), Expect = 0.34
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S SS S + A+ L + A+G + A ++PA R GAAPA T PA A+
Sbjct: 343 SEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAK--ESPRKGAAPAPPGKTGPAVAK 400
Query: 179 GPGGRRFSGLLTPSAARPDPPAPPAQA 205
G+R + S PAQA
Sbjct: 401 AQAGKREEDSQSSSEESDSEEEAPAQA 427
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 34.7 bits (78), Expect = 0.34
Identities = 53/211 (25%), Positives = 79/211 (37%), Gaps = 29/211 (13%)
Query: 546 YGSYHQQVSLLTFTLLSYKTGVTAATFWPSVGPCASPNGPAGE----FSASATAAIGKKA 601
YG Y ++ L T L SY V AT P+ A+P A AA+G
Sbjct: 635 YGCYAEENGLRTL-LASYSLTVRPATPAPAPKAPATPGAQLAPDVRLLYVLAIAALGGLC 693
Query: 602 ---SMSLLAVSV-----------FSIGQKPKSGPQEASPESLTCCKSGFGYNQEVDGDDT 647
+ SLL V+ +S+G+ ++G +++ SG +E +GDD
Sbjct: 694 LILASSLLYVACLREGRRGRRRKYSLGRASRAGGSAVQLQTV----SGQCPGEEDEGDDE 749
Query: 648 GEGG-EGPCASACPNRSQRTELKPRPLTPEVPDDHYGTAQP-----MTHSGVVHLGTHMK 701
G GG EG C P P P P + A P M + V L
Sbjct: 750 GAGGLEGSCLQIIPGEGAPAPPPPPPPPPPAELTNGLVALPSRLRRMNGNSYVLLRQSNN 809
Query: 702 HIQDLPLGKKEKSTYLLAPSRHWKHVPEDDE 732
+ P E+ + +L +H + V + DE
Sbjct: 810 GVPAGPCSFAEELSRILEKRKHTQLVEQLDE 840
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 34.3 bits (77), Expect = 0.45
Identities = 47/177 (26%), Positives = 65/177 (36%), Gaps = 20/177 (11%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S F++ + K A RR + A S AA S A P G+ + R
Sbjct: 126 SPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADP----GSTSSATR 181
Query: 179 GPGGRRFSG-LLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTR 237
P RR S L P A PD P P+++ TP AP + SR G + + TR
Sbjct: 182 VPRARRSSRRALQPRHAAPDAPGAPSRS---TSQATPPPAPRFP-ASRRPGAPRLLSRTR 237
Query: 238 NRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQP 294
R+L G ++ L L+ G +P + LT P D P
Sbjct: 238 QRELGGSAAPSVAFSG--DVTLSLERGPAS---------AKPPPQVLTAEPREDATP 283
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 34.3 bits (77), Expect = 0.45
Identities = 47/177 (26%), Positives = 65/177 (36%), Gaps = 20/177 (11%)
Query: 119 SLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEAR 178
S F++ + K A RR + A S AA S A P G+ + R
Sbjct: 126 SPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADP----GSTSSATR 181
Query: 179 GPGGRRFSG-LLTPSAARPDPPAPPAQAWDRRGSVTPTGAPIWELVSRVHGYQKEVVFTR 237
P RR S L P A PD P P+++ TP AP + SR G + + TR
Sbjct: 182 VPRARRSSRRALQPRHAAPDAPGAPSRS---TSQATPPPAPRFP-ASRRPGAPRLLSRTR 237
Query: 238 NRDLLSKLGVCALEEGKDELGLQLKEGQEKEEMKCHDIRPRPSQRTLTRLPARDCQP 294
R+L G ++ L L+ G +P + LT P D P
Sbjct: 238 QRELGGSAAPSVAFSG--DVTLSLERGPAS---------AKPPPQVLTAEPREDATP 283
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.9 bits (76), Expect = 0.59
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 126 NFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGFKGTAPAEARGPGGRRF 185
+F + AR L A G R +R AP + S G PA G APA R P +
Sbjct: 737 SFCPQVARPLVGPLALGSPRLVRRPPPGPAPAAASPGPPPPASPPG-APASPRAPRTSPY 795
Query: 186 SGLLTPSAARPDPPAPPAQAWDRRGSVT----PTGAP 218
GL A P PA R S + P GAP
Sbjct: 796 GGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAP 832
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,595,202
Number of Sequences: 37866
Number of extensions: 1953119
Number of successful extensions: 8957
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 8633
Number of HSP's gapped (non-prelim): 479
length of query: 771
length of database: 18,247,518
effective HSP length: 110
effective length of query: 661
effective length of database: 14,082,258
effective search space: 9308372538
effective search space used: 9308372538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.