Guide to the Human Genome
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Name: LOC100291301 Sequence: fasta or formatted (364aa) NCBI GI: 239751142
Description:

PREDICTED: hypothetical protein XP_002347724

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         25           2
 C cysteine            2.7         10           1
 D aspartate           5.2         19           1
 E glutamate           5.5         20           2
 F phenylalanine       1.4          5           1
 G glycine             6.9         25           1
 H histidine           3.3         12           2
 I isoleucine          4.7         17           1
 K lysine              4.1         15           1
 L leucine             7.7         28           2
 M methionine          1.4          5           2
 N asparagine          4.4         16           2
 P proline             6.9         25           2
 Q glutamine           6.0         22           2
 R arginine            6.3         23           2
 S serine             11.3         41           3
 T threonine           5.2         19           2
 V valine              7.7         28           2
 W tryptophan          1.4          5           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347724 
BANP                  0.449   BTG3 associated nuclear protein isoform b 
BANP                  0.449   BTG3 associated nuclear protein isoform a 
GRB14                 0.021   growth factor receptor-bound protein 14 
HRNR                  0.017   hornerin 
LOC100292307          0.014   PREDICTED: hypothetical protein 
LOC100290778          0.014   PREDICTED: hypothetical protein XP_002346922 
LOC100288747          0.014   PREDICTED: hypothetical protein XP_002342803 
LOC100288747          0.014   PREDICTED: hypothetical protein 
PRAM1                 0.014   PML-RARA regulated adaptor molecule 1 
PWWP2A                0.013   PWWP domain containing 2A isoform b 
TNRC6B                0.011   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.011   trinucleotide repeat containing 6B isoform 1 
LOC100129122          0.011   PREDICTED: hypothetical protein 
LOC100293375          0.011   PREDICTED: hypothetical protein 
LOC100129122          0.011   PREDICTED: hypothetical protein 
LOC100129122          0.011   PREDICTED: hypothetical protein 
TOP2A                 0.010   DNA topoisomerase II, alpha isozyme 
TPM2                  0.010   tropomyosin 2 (beta) isoform 1 
LOC100293980          0.008   PREDICTED: hypothetical protein 
LOC100290741          0.008   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.008   PREDICTED: hypothetical protein XP_002342359 
COL7A1                0.008   alpha 1 type VII collagen precursor 
GTF3C1                0.008   general transcription factor IIIC, polypeptide 1, a...
MESP2                 0.008   mesoderm posterior 2 homolog 
LOC100292183          0.008   PREDICTED: hypothetical protein isoform 1 
LOC100291555          0.007   PREDICTED: hypothetical protein XP_002345954 
LOC100291318          0.007   PREDICTED: hypothetical protein XP_002346819 
LOC100287341          0.007   PREDICTED: hypothetical protein XP_002342638 
MGC50722              0.007   hypothetical protein LOC399693 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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