Guide to the Human Genome
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Name: LOC100288445 Sequence: fasta or formatted (213aa) NCBI GI: 239741944
Description:

PREDICTED: hypothetical protein XP_002342359

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4         35           3
 C cysteine            1.4          3           1
 D aspartate           0.9          2           1
 E glutamate           6.6         14           1
 F phenylalanine       2.3          5           1
 G glycine             9.9         21           2
 H histidine           1.4          3           1
 I isoleucine          0.0          0           0
 K lysine              2.3          5           1
 L leucine             7.0         15           2
 M methionine          1.4          3           1
 N asparagine          0.9          2           1
 P proline            16.4         35           3
 Q glutamine           1.9          4           1
 R arginine           14.1         30           3
 S serine              8.0         17           2
 T threonine           2.8          6           1
 V valine              4.2          9           2
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342359 
LOC100290741          1.000   PREDICTED: hypothetical protein XP_002346521 
LOC100293980          0.995   PREDICTED: hypothetical protein 
SAMD1                 0.072   sterile alpha motif domain containing 1 
MAMSTR                0.056   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.056   MEF2 activating motif and SAP domain containing tran...
FAM71E2               0.053   hypothetical protein LOC284418 
LOC729370             0.053   PREDICTED: hypothetical protein 
SRRM1                 0.053   serine/arginine repetitive matrix 1 
RNF19B                0.053   ring finger protein 19B isoform a 
RNF19B                0.053   ring finger protein 19B isoform b 
SYNPO2L               0.053   synaptopodin 2-like isoform a 
SYNPO2L               0.053   synaptopodin 2-like isoform b 
ARAP1                 0.051   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
SALL3                 0.051   sal-like 3 
KAT2A                 0.051   general control of amino acid synthesis 5-like 2 [H...
PTPN23                0.051   protein tyrosine phosphatase, non-receptor type 23 [...
C9orf75               0.048   hypothetical protein LOC286262 isoform 2 
C9orf75               0.048   hypothetical protein LOC286262 isoform 1 
LOC100131102          0.048   PREDICTED: hypothetical protein 
LOC100130360          0.048   PREDICTED: hypothetical protein 
LOC100131102          0.048   PREDICTED: hypothetical protein 
GGN                   0.048   gametogenetin 
ZNF828                0.046   zinc finger protein 828 
ZBTB4                 0.046   zinc finger and BTB domain containing 4 
ZBTB4                 0.046   zinc finger and BTB domain containing 4 
LOC645321             0.046   PREDICTED: hypothetical protein 
LOC645321             0.046   PREDICTED: hypothetical protein 
TAF4                  0.046   TBP-associated factor 4 
RICH2                 0.046   Rho GTPase-activating protein RICH2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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