Guide to the Human Genome
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Name: LOC100289850 Sequence: fasta or formatted (183aa) NCBI GI: 239750349
Description:

PREDICTED: hypothetical protein XP_002347377

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.5          1           1
 C cysteine            2.2          4           1
 D aspartate          14.2         26           1
 E glutamate           0.5          1           1
 F phenylalanine       0.0          0           0
 G glycine            20.2         37           1
 H histidine           0.5          1           1
 I isoleucine          9.8         18           1
 K lysine              0.5          1           1
 L leucine             2.7          5           1
 M methionine         15.8         29           1
 N asparagine          1.1          2           1
 P proline             0.5          1           1
 Q glutamine           1.1          2           1
 R arginine            1.1          2           1
 S serine              1.1          2           1
 T threonine           2.7          5           1
 V valine              2.7          5           1
 W tryptophan         13.7         25           1
 Y tyrosine            8.7         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347377 
LOC100289282          0.976   PREDICTED: hypothetical protein XP_002343215 
KRTAP6-3              0.017   keratin associated protein 6-3 
OCLN                  0.017   occludin 
JPH3                  0.012   junctophilin 3 
AKAP8L                0.012   A kinase (PRKA) anchor protein 8-like 
WBP2NL                0.009   WBP2 N-terminal like 
LOC100133402          0.009   PREDICTED: hypothetical protein 
KRTAP19-1             0.009   keratin associated protein 19-1 
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
KRTAP19-3             0.007   keratin associated protein 19-3 
KRTAP20-2             0.007   keratin associated protein 20-2 
MEX3A                 0.005   MEX3A protein 
AGT                   0.005   angiotensinogen preproprotein 
KRTAP19-5             0.005   keratin associated protein 19-5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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