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Search of human proteins with 239750169
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo
sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo ... 714 0.0
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 93 4e-19
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 89 5e-18
gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo ... 39 0.010
gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens] 36 0.063
gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens] 35 0.082
gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens] 35 0.082
gi|169172718 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239753574 PREDICTED: hypothetical protein, partial [Homo sapi... 30 3.4
gi|39995080 hypothetical protein LOC79567 [Homo sapiens] 30 3.4
gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens neanderthal... 30 4.5
gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens] 30 4.5
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 29 7.7
>gi|239750169 PREDICTED: hypothetical protein XP_002347312 [Homo
sapiens]
Length = 368
Score = 714 bits (1844), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MVFTHEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVT 60
MVFTHEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVT
Sbjct: 1 MVFTHEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVT 60
Query: 61 HEAILTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEAT 120
HEAILTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEAT
Sbjct: 61 HEAILTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEAT 120
Query: 121 LIINRVTVVTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIH 180
LIINRVTVVTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIH
Sbjct: 121 LIINRVTVVTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIH 180
Query: 181 RITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIV 240
RITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIV
Sbjct: 181 RITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIV 240
Query: 241 VTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHK 300
VTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHK
Sbjct: 241 VTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHK 300
Query: 301 EILIINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVVTLEATHYLPGKTGYPRGNTYY 360
EILIINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVVTLEATHYLPGKTGYPRGNTYY
Sbjct: 301 EILIINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVVTLEATHYLPGKTGYPRGNTYY 360
Query: 361 PPGNSGYP 368
PPGNSGYP
Sbjct: 361 PPGNSGYP 368
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 92.8 bits (229), Expect = 4e-19
Identities = 87/372 (23%), Positives = 157/372 (42%), Gaps = 9/372 (2%)
Query: 1 MVFTHEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVT 60
MV + + I V V++ + I V V T +I + V+T AI + ++T
Sbjct: 1 MVTSSLTVAITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLT 60
Query: 61 HEAILTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEAT 120
++T V+T I V+T V I V ++T +I ++VT
Sbjct: 61 SLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVTSLVM 120
Query: 121 LIINRVTVVTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIH 180
+I V V+T ++I V V+T ++I VIT ++I V+T +I
Sbjct: 121 VITPLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITS 180
Query: 181 RITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPII----D 236
V+T ++I + V T +++I I L +T + + IP++
Sbjct: 181 LFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPLVVVITS 240
Query: 237 WIIVVTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTV 296
I+V+T +V+++I + V V+I+ V V+ ++ I + ++S +I V V
Sbjct: 241 LIVVITSLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIVVITSLVVV 300
Query: 297 VTHKEILIINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVVTLEATHYLPGKTGYPRG 356
+T ++I + + V+ +I V V+T +II T+ LP + R
Sbjct: 301 ITSLVVVITSLIVVITSLVVVITSLVVVITSLIVVIIPLSTL-----PPPLPASASHARW 355
Query: 357 NTYYPPGNSGYP 368
T P N P
Sbjct: 356 MTADPLCNQNLP 367
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 89.4 bits (220), Expect = 5e-18
Identities = 84/365 (23%), Positives = 154/365 (42%), Gaps = 15/365 (4%)
Query: 8 IFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVTHEAILTI 67
+ II VV+ + +I + VV + I + VV ++ + L +VT ++
Sbjct: 21 VVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTFTVVVLTSLVVVTTSLVM-- 78
Query: 68 HQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIINRVT 127
V+T I V+T V I V ++T +I ++VT +I V
Sbjct: 79 ----VITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVTSLVMVITPLVA 134
Query: 128 VVTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVVTH 187
V+T ++I V V+T ++I VIT ++I V+T +I V+T
Sbjct: 135 VITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLFVVITP 194
Query: 188 ETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPII----DWIIVVTP 243
++I + V T +++I I L +T + + IP++ I+V+T
Sbjct: 195 LVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPLVVVITSLIVVITS 254
Query: 244 VVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHKEIL 303
+V+++I + V V+I+ V V+ ++ I + ++S +I V V+T ++
Sbjct: 255 LVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIVVITSLVVVITSLVVV 314
Query: 304 IINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVVTLEATHYLPGKTGYPRGNTYYPPG 363
I + + V+ +I V V+T +II T+ LP + R T P
Sbjct: 315 ITSLIVVITSLVVVITSLVVVITSLIVVIIPLSTL-----PPPLPASASHARWMTADPLC 369
Query: 364 NSGYP 368
N P
Sbjct: 370 NQNLP 374
Score = 87.8 bits (216), Expect = 1e-17
Identities = 82/335 (24%), Positives = 144/335 (42%), Gaps = 12/335 (3%)
Query: 16 VVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVTHEAILTIHQATVVTH 75
V S + I V V+T +I + V T ++ + + ++T AI V+T
Sbjct: 2 VTSSLTVAITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTF 61
Query: 76 EATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVIL-------VTQEATLIINRVTV 128
+ V V T V I ++T +I V++ +T +I + V
Sbjct: 62 TVVVLTSLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVV 121
Query: 129 VTHEAILIIHRVTVVTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVVTHE 188
VT ++I V V+T ++I V VIT ++I V+T +I + V+T
Sbjct: 122 VTSLVMVITPLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSL 181
Query: 189 TILIIHRVTVVTHEAILIIHCITVITHEA----TLIIDWVTVVTLQAIPIIDWIIVVTPV 244
T++I V+T ++I I V T TLI+ + L A I +V+ P+
Sbjct: 182 TVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPL 241
Query: 245 VLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHKEILI 304
V++I + V+T V++ + V VVT I+ I + +V ++ + VV I++
Sbjct: 242 VVVITSLIVVIT-SLVVVLIAVIVVTPSLIVVISSLVVVIASLVVVFISLIVVISSLIVV 300
Query: 305 INQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVV 339
I + VV ++I + VV ++I VV
Sbjct: 301 ITSLVVVITSLVVVITSLIVVITSLVVVITSLVVV 335
Score = 78.2 bits (191), Expect = 1e-14
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 27/301 (8%)
Query: 58 MVTHEAILTIHQATVVTHEATRIIHQVTVVTHE-VTFIFHRVRIVTHDATLIIQWVILVT 116
MVT + I VV II VVT V I V ++T A I V+++T
Sbjct: 1 MVTSSLTVAITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLT 60
Query: 117 QEATLIINRVTVVTHEAILIIHRVTVVTHEAILIIHWVT-------VITLEAILIIHWET 169
++ + V V T ++I V+T ++I V VIT ++I
Sbjct: 61 FTVVVLTSLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGV 120
Query: 170 VVTHKATLIIHRITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTL 229
VVT +I + V+T ++I V V+T ++I VIT +I V V+T
Sbjct: 121 VVTSLVMVITPLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITS 180
Query: 230 QAIPIIDWIIVVTPVVLLIIQQVAVVTH-ETVLITLRVT----------------VVTHD 272
+ I +V+TP+V++I + V T VLITL V+ VV
Sbjct: 181 LTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIP 240
Query: 273 AILTIHRVTLVSHEATLIIHQVTVVTHKEILIINQVTVVPHEATLIIQRVTVVTLEATLI 332
++ I + +V +++ V VVT I++I+ + VV A+L++ ++++ + ++LI
Sbjct: 241 LVVVITSLIVVITSLVVVLIAVIVVTPSLIVVISSLVVV--IASLVVVFISLIVVISSLI 298
Query: 333 I 333
+
Sbjct: 299 V 299
Score = 78.2 bits (191), Expect = 1e-14
Identities = 65/264 (24%), Positives = 119/264 (45%), Gaps = 6/264 (2%)
Query: 84 VTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIINRVTVVTHEAILIIHRVTVV 143
V V+T V I V + T +I V+++T A I V V+T +++ V V
Sbjct: 14 VVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLTFTVVVLTSLVVVT 73
Query: 144 THEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEA 203
T ++I VIT ++I ++T +I V+T +++ V V+T
Sbjct: 74 TSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVTSLVMVITPLV 133
Query: 204 ILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHETVLIT 263
+I VIT +I V V+T + I I+V+TP+V++I ++T V+IT
Sbjct: 134 AVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTVIITSLFVVIT 193
Query: 264 LRVTVVTH----DAILTIHRVTLVSHEATLIIHQVTVVTHKEILIINQVTVVPHEATLII 319
V V+T + L + +TL+ + +T ++II V V+ + +++
Sbjct: 194 PLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITSLFVVIIPLVVVI--TSLIVV 251
Query: 320 QRVTVVTLEATLIIHQGTVVTLEA 343
VV L A +++ +V + +
Sbjct: 252 ITSLVVVLIAVIVVTPSLIVVISS 275
Score = 72.0 bits (175), Expect = 8e-13
Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 17/268 (6%)
Query: 86 VVTHEVTF-IFHRVRIVTHDATLIIQWVILVTQEATLIINRVTVVTHEAILIIHRVTVVT 144
+VT +T I V ++T +I +V++ T +I + V V+T AI I V V+T
Sbjct: 1 MVTSSLTVAITSLVVVITSLVVIITSFVVVTTSLVVVITSLVVVITSIAIAIATLVVVLT 60
Query: 145 HEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAI 204
+++ V V T ++I V+T +I + ++T ++I V+T +
Sbjct: 61 FTVVVLTSLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGV 120
Query: 205 LIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHETVLITL 264
++ + VIT V V+T + I ++V+T +V++I V+T V+IT
Sbjct: 121 VVTSLVMVIT-------PLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITP 173
Query: 265 RVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHKEILIINQVTVVPHEATLIIQRVT- 323
V V+T ++ +++ +I + V T +++I + P L +T
Sbjct: 174 LVMVITSLTVIITSLFVVITPLVMVITFLIVVNTSLVVVLITLIVSPPPSLWLSAPCITS 233
Query: 324 --------VVTLEATLIIHQGTVVTLEA 343
VV + + +++ VV L A
Sbjct: 234 LFVVIIPLVVVITSLIVVITSLVVVLIA 261
>gi|239746071 PREDICTED: hypothetical protein XP_002343650 [Homo
sapiens]
Length = 168
Score = 38.5 bits (88), Expect = 0.010
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 5/163 (3%)
Query: 28 VTVVTQEATLIIHRITVVTHEAILSINGLTMVTHEAILTIHQATVVTHEATRIIHQVTVV 87
+TV + R+ V H + + + H A+ + TV H A ++ V
Sbjct: 1 MTVERHSVVALGRRMIVERHSVVAPGGKMIVERHSAVAPAGKMTVERHSAVAPAGRMIVE 60
Query: 88 THEVTFIFHRVRIVTHDAT-----LIIQWVILVTQEATLIINRVTVVTHEAILIIHRVTV 142
H R+ + +H A +I++ V +I+ R +VV +I+ R +V
Sbjct: 61 RHSAVAPGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILERHSV 120
Query: 143 VTHEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVV 185
V +I+ +V+ L +I+ + V +I+ R + V
Sbjct: 121 VALGGRMIVERHSVVALGGRVILERHSAVAPGGRMIVERHSAV 163
Score = 36.6 bits (83), Expect = 0.037
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 225 TVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVS 284
+VV L I++ VV P +I+++ H V ++TV H A+ R+ +
Sbjct: 7 SVVALGRRMIVERHSVVAPGGKMIVER-----HSAVAPAGKMTVERHSAVAPAGRMIVER 61
Query: 285 HEATLIIHQVTVVTHKEILIINQVTVVPHEAT-----LIIQRVTVVTLEATLIIHQGTVV 339
H A ++ V +H + ++ V H A +I++R +VV L +I+ + +VV
Sbjct: 62 HSAVAPGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILERHSVV 121
Query: 340 TL 341
L
Sbjct: 122 AL 123
Score = 35.8 bits (81), Expect = 0.063
Identities = 31/148 (20%), Positives = 58/148 (39%)
Query: 1 MVFTHEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVT 60
+V H + ++ V H + ++TV A R+ V H A+ + + +
Sbjct: 16 IVERHSVVAPGGKMIVERHSAVAPAGKMTVERHSAVAPAGRMIVERHSAVAPGGRMIVES 75
Query: 61 HEAILTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEAT 120
H A+ + V +H A ++ V H V + RV + H + +I+
Sbjct: 76 HSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILERHSVVALGGRMIVERHSVV 135
Query: 121 LIINRVTVVTHEAILIIHRVTVVTHEAI 148
+ RV + H A+ R+ V H A+
Sbjct: 136 ALGGRVILERHSAVAPGGRMIVERHSAV 163
Score = 35.4 bits (80), Expect = 0.082
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 182 ITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVV 241
+TV H + + R+ V H + + V H A +TV A V
Sbjct: 1 MTVERHSVVALGRRMIVERHSVVAPGGKMIVERHSAVAPAGKMTVERHSA---------V 51
Query: 242 TPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLVSHEAT-----LIIHQVTV 296
P +I+++ H V R+ V +H A+ R+ + SH A +I+ + +V
Sbjct: 52 APAGRMIVER-----HSAVAPGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSV 106
Query: 297 VTHKEILIINQVTVVPHEATLIIQRVTVVTLEATLIIHQGTVV 339
V +I+ + +VV +I++R +VV L +I+ + + V
Sbjct: 107 VALGGRVILERHSVVALGGRMIVERHSVVALGGRVILERHSAV 149
Score = 35.0 bits (79), Expect = 0.11
Identities = 28/144 (19%), Positives = 55/144 (38%)
Query: 5 HEAIFIIHQVTVVSHEEIHIIHQVTVVTQEATLIIHRITVVTHEAILSINGLTMVTHEAI 64
H + + ++ V H + ++ V A ++TV H A+ + + H A+
Sbjct: 6 HSVVALGRRMIVERHSVVAPGGKMIVERHSAVAPAGKMTVERHSAVAPAGRMIVERHSAV 65
Query: 65 LTIHQATVVTHEATRIIHQVTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIIN 124
+ V +H A ++ V +H R+ + H + VIL +
Sbjct: 66 APGGRMIVESHSAVAPGGRMIVESHSAVAPGGRMIVERHSVVALGGRVILERHSVVALGG 125
Query: 125 RVTVVTHEAILIIHRVTVVTHEAI 148
R+ V H + + RV + H A+
Sbjct: 126 RMIVERHSVVALGGRVILERHSAV 149
>gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens]
Length = 490
Score = 35.8 bits (81), Expect = 0.063
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 224 VTVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHETVLITLRVTVVTHDAILTIHRVTLV 283
V VV + + ++ ++VV VVL+++ V VV V++ + V VV ++ + V V
Sbjct: 3 VVVVVMVVVMVV--VVVVVMVVLVVVVVVMVV---VVVVEVMVMVVVVVVVMVVVVVVEV 57
Query: 284 SHEATLIIHQVTVVTHKEILIINQVTVVPHEATLIIQRVTVVTLEATLII 333
+++ + VV E++++ V VV +++ + VV + +++
Sbjct: 58 MVMVVVVVVVMVVVVVVEVMVMVVVVVVVMVVVVMVVVMVVVVMVVVMVV 107
>gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]
Length = 1086
Score = 35.4 bits (80), Expect = 0.082
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 165 IHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIID 222
+HW++++ +T+II R+ + ++ ++H +T+E ++ +TV +HE T I D
Sbjct: 734 VHWDSIIIQASTMIISRVPNI---SVHLLHEPPALTNEMYCLV--VTVQSHEKTQIRD 786
>gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]
Length = 1133
Score = 35.4 bits (80), Expect = 0.082
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 165 IHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAILIIHCITVITHEATLIID 222
+HW++++ +T+II R+ + ++ ++H +T+E ++ +TV +HE T I D
Sbjct: 734 VHWDSIIIQASTMIISRVPNI---SVHLLHEPPALTNEMYCLV--VTVQSHEKTQIRD 786
>gi|169172718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 2.6
Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 32/164 (19%)
Query: 151 IHWVTVITLEAILIIHWET-----VVTHKATLIIHRITVVTHETI-LIIHRVT-----VV 199
IH T I + IH T V TH + RI TH + IH T V
Sbjct: 5 IHIYTHIYMHIYTYIHIYTYMYVYVYTHIHIYVCIRIYTYTHICMHTYIHIYTYMYAYVY 64
Query: 200 THEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHET 259
TH I I CI + T+ I + T + + V V TH
Sbjct: 65 THIHICIYVCIRIYTYTH--------------------ICMYTYIHIYAYMYVYVYTHIR 104
Query: 260 VLITLRVTVVTHDAILT-IHRVTLVSHEATLIIHQVTVVTHKEI 302
+ + +R+ TH + T IH + + IH + H I
Sbjct: 105 IYVCIRIYTYTHICVYTYIHIYAYMCVYMCIYIHTYIIYIHTYI 148
>gi|239753574 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 241
Score = 30.0 bits (66), Expect = 3.4
Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 4/171 (2%)
Query: 145 HEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAI 204
H I I +V + T I I + + TH I + + TH I I V + TH I
Sbjct: 2 HTHICIYVYVHIHTHTHICIYVYVHIHTHTHICIYVYVHIYTHTHICIYVYVHIHTH--I 59
Query: 205 LIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVV--TPVVLLIIQQVAVVTHETVLI 262
+ C+ + TH I V + + +I T V + + + + I
Sbjct: 60 YVYMCMYIYTHTYICIYVHVHIYVYMCMYTHMYICACTHTHVYMCMYTHICIYVRVHTHI 119
Query: 263 TLRVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHKEILIINQVTVVPH 313
+ V V H I + + H I V + TH + + + + H
Sbjct: 120 CIYVHVHIHTHIYVYMCMYIYIHTHICIYVYVHIHTHIYVYMCMYIYIHTH 170
Score = 29.3 bits (64), Expect = 5.9
Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 8/178 (4%)
Query: 84 VTVVTHEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIINRVTVVTHEAILIIHRVTVV 143
V + TH I+ V I TH I +V + T I V + TH I + + +
Sbjct: 11 VHIHTHTHICIYVYVHIHTHTHICIYVYVHIYTHTHICIYVYVHIHTH--IYVYMCMYIY 68
Query: 144 THEAILIIHWVTVITLEAILIIHWETVVTHKATLIIHR----ITVVTHETILIIHRVTVV 199
TH I I V + + + TH + I V H I I V +
Sbjct: 69 THTYICIYVHVHIYVYMCMYTHMYICACTHTHVYMCMYTHICIYVRVHTHICIYVHVHIH 128
Query: 200 THEAILIIHCITVITHEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTH 257
TH I + C+ + H I +V + T + + +I + T + + + + T+
Sbjct: 129 TH--IYVYMCMYIYIHTHICIYVYVHIHTHIYVYMCMYIYIHTHICIYVCVHIHTHTY 184
Score = 28.9 bits (63), Expect = 7.7
Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 8/219 (3%)
Query: 88 THEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIINRVTVVTHEAILIIHRVTVVTHEA 147
TH +++ V I TH I +V + T I V + TH I I V + TH
Sbjct: 3 THICIYVY--VHIHTHTHICIYVYVHIHTHTHICIYVYVHIYTHTHICIYVYVHIHTHIY 60
Query: 148 ILIIHWVTVITLEAILI-IHWETVVTHKATLIIHRITVVTHETILIIHRVTVVTHEAILI 206
+ + ++ T I + +H + + I TH + + + + +
Sbjct: 61 VYMCMYIYTHTYICIYVHVH---IYVYMCMYTHMYICACTHTHVYMCMYTHICIYVRVHT 117
Query: 207 IHCITVITHEATLIIDWVT--VVTLQAIPIIDWIIVVTPVVLLIIQQVAVVTHETVLITL 264
CI V H T I ++ + I I ++ + T + + + + + TH + + +
Sbjct: 118 HICIYVHVHIHTHIYVYMCMYIYIHTHICIYVYVHIHTHIYVYMCMYIYIHTHICIYVCV 177
Query: 265 RVTVVTHDAILTIHRVTLVSHEATLIIHQVTVVTHKEIL 303
+ T+ ++ + +T+++ V K +L
Sbjct: 178 HIHTHTYIFKFLVYNTLCDTWTSTVLVLSVFTELIKHVL 216
>gi|39995080 hypothetical protein LOC79567 [Homo sapiens]
Length = 1219
Score = 30.0 bits (66), Expect = 3.4
Identities = 26/114 (22%), Positives = 36/114 (31%)
Query: 28 VTVVTQEATLIIHRITVVTHEAILSINGLTMVTHEAILTIHQATVVTHEATRIIHQVTVV 87
+T + + H T TH+ I+S T T I + T TH H
Sbjct: 556 ITTTHSAPSPLTHTTTGSTHKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTHTTASP 615
Query: 88 THEVTFIFHRVRIVTHDATLIIQWVILVTQEATLIINRVTVVTHEAILIIHRVT 141
TH T H TH ++ T ++ T TH H T
Sbjct: 616 THTSTSPTHTPTSPTHKTSMSPPTTTSPTPSGMGLVQTATSPTHPTTSPTHPTT 669
>gi|196123584 ATP synthase F0 subunit 6 [Homo sapiens
neanderthalensis]
Length = 226
Score = 29.6 bits (65), Expect = 4.5
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 190 ILIIHRVTVVTHEAILIIHCITVIT--HEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLL 247
++II ++++ L + IT H +I T+ + I + +I+ T ++LL
Sbjct: 141 LVIIETISLLIQPVALAVRLTANITAGHLLMHLIGNATLA-MSTINLPSTLIIFTILILL 199
Query: 248 IIQQVAVVTHETVLITLRVTVVTHD 272
I ++AV + + TL V++ HD
Sbjct: 200 TILEIAVALIQAYVFTLLVSLYLHD 224
>gi|251831112 ATP synthase F0 subunit 6 [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 4.5
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 190 ILIIHRVTVVTHEAILIIHCITVIT--HEATLIIDWVTVVTLQAIPIIDWIIVVTPVVLL 247
++II ++++ L + IT H +I T+ + I + +I+ T ++LL
Sbjct: 141 LVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA-MSTINLPSTLIIFTILILL 199
Query: 248 IIQQVAVVTHETVLITLRVTVVTHD 272
I ++AV + + TL V++ HD
Sbjct: 200 TILEIAVALIQAYVFTLLVSLYLHD 224
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 7.7
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 344 THYLPGKTG----YPRGNTYYPPGNSGYP 368
T Y+PG G YP G YPP SGYP
Sbjct: 161 TSYMPGMPGGISPYPSG---YPPNPSGYP 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,359,376
Number of Sequences: 37866
Number of extensions: 426341
Number of successful extensions: 1456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 53
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.