Guide to the Human Genome
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Name: LOC100287936 Sequence: fasta or formatted (168aa) NCBI GI: 239746071
Description:

PREDICTED: hypothetical protein XP_002343650

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         21           1
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           7.1         12           1
 F phenylalanine       0.0          0           0
 G glycine            12.5         21           2
 H histidine           7.1         12           1
 I isoleucine          6.0         10           1
 K lysine              1.2          2           1
 L leucine             3.6          6           1
 M methionine          6.0         10           1
 N asparagine          0.0          0           0
 P proline             4.8          8           1
 Q glutamine           0.0          0           0
 R arginine           11.9         20           2
 S serine              8.3         14           1
 T threonine           1.2          2           1
 V valine             17.9         30           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343650 
LOC100287903          0.700   PREDICTED: hypothetical protein XP_002343649 
ANK2                  0.100   ankyrin 2 isoform 1 
HDAC6                 0.083   histone deacetylase 6 
LOC100291351          0.047   PREDICTED: hypothetical protein XP_002347312 
LOC391343             0.047   hypothetical protein LOC391343 
LOC100289162          0.043   PREDICTED: hypothetical protein XP_002342718 
LOC100289979          0.037   PREDICTED: hypothetical protein XP_002346878 
LOC100289898          0.037   PREDICTED: hypothetical protein XP_002346876 
LOC100289273          0.037   PREDICTED: hypothetical protein XP_002342720 
LOC100134663          0.017   PREDICTED: hypothetical protein, partial 
EEF1A2                0.010   eukaryotic translation elongation factor 1 alpha 2 [H...
RELA                  0.007   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.007   v-rel reticuloendotheliosis viral oncogene homolog ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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