Guide to the Human Genome
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Name: ATP6 Sequence: fasta or formatted (226aa) NCBI GI: 196123584
Description:

ATP synthase F0 subunit 6

Homo sapiens neanderthalensis sequence

Other entries for this name:
alt prot [226aa] ATP synthase F0 subunit 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         20           2
 C cysteine            0.0          0           0
 D aspartate           0.4          1           1
 E glutamate           1.3          3           1
 F phenylalanine       4.0          9           1
 G glycine             3.5          8           1
 H histidine           2.7          6           1
 I isoleucine         12.8         29           2
 K lysine              2.7          6           1
 L leucine            19.5         44           2
 M methionine          4.9         11           2
 N asparagine          5.3         12           2
 P proline             6.2         14           2
 Q glutamine           3.1          7           2
 R arginine            1.8          4           1
 S serine              5.3         12           1
 T threonine          11.1         25           3
 V valine              4.0          9           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase F0 subunit 6 
ATP6                  0.980   ATP synthase F0 subunit 6 
LOC100289996          0.024   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.024   PREDICTED: hypothetical protein XP_002343076 
SLC30A5               0.022   solute carrier family 30 (zinc transporter), member ...
ND2                   0.015   NADH dehydrogenase subunit 2 
ND2                   0.015   NADH dehydrogenase subunit 2 
DOLK                  0.015   dolichol kinase 
LOC100291351          0.012   PREDICTED: hypothetical protein XP_002347312 
OR51Q1                0.010   olfactory receptor, family 51, subfamily Q, member 1...
NDUFV1                0.007   NADH dehydrogenase ubiquinone flavoprotein 1 precurs...
NRXN2                 0.007   neurexin 2 isoform beta precursor 
LOC100291610          0.007   PREDICTED: similar to KIAA1920 protein 
ITPR2                 0.007   inositol 1,4,5-triphosphate receptor, type 2 
LOC100133083          0.007   PREDICTED: hypothetical protein 
C20orf26              0.007   hypothetical protein LOC26074 
DISP2                 0.007   dispatched B 
ZNF668                0.007   zinc finger protein 668 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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