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Search of human proteins with 239749044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo ... 236 2e-63
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 180 2e-46
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 180 2e-46
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 177 2e-45
gi|82546824 forkhead box K1 [Homo sapiens] 39 7e-04
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 37 0.003
gi|4557733 latent transforming growth factor beta binding protei... 36 0.006
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap... 36 0.006
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap... 36 0.006
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap... 36 0.006
gi|51479177 iroquois homeobox protein 1 [Homo sapiens] 36 0.006
gi|14043024 BCL2-associated athanogene 3 [Homo sapiens] 35 0.010
gi|33286436 gametogenetin [Homo sapiens] 35 0.013
gi|117938759 GNAS complex locus XLas [Homo sapiens] 35 0.017
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.017
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 35 0.017
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.017
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 34 0.022
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 34 0.022
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 34 0.022
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 34 0.022
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 34 0.022
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 34 0.022
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 34 0.022
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 34 0.022
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 34 0.029
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 34 0.029
gi|154146199 sal-like 3 [Homo sapiens] 34 0.029
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 34 0.029
gi|225543407 BTB domain protein BDPL [Homo sapiens] 33 0.037
>gi|239749044 PREDICTED: hypothetical protein XP_002346891 [Homo
sapiens]
Length = 114
Score = 236 bits (603), Expect = 2e-63
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIRPRFIPARPTS 114
ATAESPDTPEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIRPRFIPARPTS
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIRPRFIPARPTS 114
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 180 bits (456), Expect = 2e-46
Identities = 87/89 (97%), Positives = 87/89 (97%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENG 89
ATAESPDTPEEPPEEPAPAIAPGGSG G
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 180 bits (456), Expect = 2e-46
Identities = 87/89 (97%), Positives = 87/89 (97%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSGENG 89
ATAESPDTPEEPPEEPAPAIAPGGSG G
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGSGGGG 89
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 177 bits (448), Expect = 2e-45
Identities = 85/86 (98%), Positives = 85/86 (98%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP
Sbjct: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAP 60
Query: 61 ATAESPDTPEEPPEEPAPAIAPGGSG 86
ATAESPDTPEEPPEEPAPAIAPGG G
Sbjct: 61 ATAESPDTPEEPPEEPAPAIAPGGGG 86
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 39.3 bits (90), Expect = 7e-04
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 38 ASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG---GSGENG 89
A P LC AAAA A PA A+ P P PP P P + PG G+G +G
Sbjct: 19 APCSPVLCAAAAAAAFPAAAPPPAPAQ-PQPPPGPPPPPPPPLPPGAIAGAGSSG 72
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 6 PMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAES 65
P ST P E G + P A++ G TE+ AA ++PA AE
Sbjct: 84 PPASSTSPSPEPADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVAAPDSGASSPAAAE- 142
Query: 66 PDTPEEPPEEPAPAIAPGG 84
P P EP+PA AP G
Sbjct: 143 PGEKRAPAAEPSPAAAPAG 161
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 28 RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPP 73
+NS P A P L R+ AA T A A P +SP P+ PP
Sbjct: 230 QNSRLAPRRWAERSPNLRRSSAAGEGTLARAQPPAPQSPPAPQSPP 275
>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 23 LGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEP--APA 79
L W +SR + A RT AA G+AP TA+ SPD+P P AP
Sbjct: 2 LEWFRTADSSRQTDSAP------RTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPL 55
Query: 80 IA---PGGSGENGDKASRA 95
I+ PGGSG+NG A
Sbjct: 56 ISIRTPGGSGQNGSAPQAA 74
>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 23 LGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEP--APA 79
L W +SR + A RT AA G+AP TA+ SPD+P P AP
Sbjct: 2 LEWFRTADSSRQTDSAP------RTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPL 55
Query: 80 IA---PGGSGENGDKASRA 95
I+ PGGSG+NG A
Sbjct: 56 ISIRTPGGSGQNGSAPQAA 74
>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 23 LGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE-SPDTPEEPPEEP--APA 79
L W +SR + A RT AA G+AP TA+ SPD+P P AP
Sbjct: 2 LEWFRTADSSRQTDSAP------RTAPKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPL 55
Query: 80 IA---PGGSGENGDKASRA 95
I+ PGGSG+NG A
Sbjct: 56 ISIRTPGGSGQNGSAPQAA 74
>gi|51479177 iroquois homeobox protein 1 [Homo sapiens]
Length = 480
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 57 GAAPATAESPDTPEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIRPRFIPARPTS 114
GA A P P PP +P AIAPG NGDKAS + +P L +P RP S
Sbjct: 395 GAPHAAPHGPHLPAPPPPQPPVAIAPGAL--NGDKASVRS--SPTLPERDLVP-RPDS 447
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 LGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAE 64
LG+ S + P + PG+ AAAAA + P AE
Sbjct: 6 LGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGAAE 47
>gi|14043024 BCL2-associated athanogene 3 [Homo sapiens]
Length = 575
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPG 83
P S GP + + AT AAP+TA + TP +P E AP PG
Sbjct: 372 PCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHPG 421
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 19 PMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAP 78
P +T G + S P++ + P L +A A + PA A + P P PAP
Sbjct: 463 PPLTPGLGHKESALAPTAAPALPPALAADQAPAPS------PAPAPTVAEPSPPVSAPAP 516
Query: 79 AIAPGGSGENGDKASRAA 96
A AP + +K SRAA
Sbjct: 517 AAAPIKTRTRRNKGSRAA 534
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 34.7 bits (78), Expect = 0.017
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 39 SAGPGLCRTEAAAAATRAGAAPATAESPD---TPEEPPEEPAPAIAPGG--SGENGDKAS 93
S G G AA+A T A AAPA PD TPE+P APA G + + A+
Sbjct: 375 SPGYGSPAAGAASADTAARAAPAAPADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAA 434
Query: 94 RAACCNPVLIRPRFIPARPTS 114
AA +P PA P S
Sbjct: 435 PAAPADPDSGAAPDAPADPDS 455
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP--PEEPAPAIAPGGSGENGDKA 92
S +A P AA A +GAAP PD+ P P +P AP
Sbjct: 422 SGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAE 481
Query: 93 SRAACCNP 100
+RAA P
Sbjct: 482 TRAAHVAP 489
Score = 26.9 bits (58), Expect = 3.5
Identities = 28/103 (27%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 31 NSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPA----------- 79
+S + A A P A A +GAAP PD P APA
Sbjct: 430 DSGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVAP 489
Query: 80 --------IAPGGSGENGDKASRAACCNPVLIRPRFIPARPTS 114
AP S + RAA P R I RP S
Sbjct: 490 AAPDAGAPTAPAASATRAAQVRRAASAAPASGARRKIHLRPPS 532
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATA---------ESPDTPEEPPEEPAPAIAPGG 84
P + A P T AA A AAPA+ SP+ P P P A
Sbjct: 492 PDAGAPTAPAASATRAAQVRRAASAAPASGARRKIHLRPPSPEIQAADPPTPRPTRASAW 551
Query: 85 SGENGDKASR 94
G++ R
Sbjct: 552 RGKSESSRGR 561
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP--PEEPAPAIAPGGSGENGDK 91
P + A+ P AA AA PA A P P P APA+ P + +NG
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS 308
Query: 92 ASRAACCNPVLIRPRFIPARP 112
A A P P + +P
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQP 329
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 13 PCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP 72
P RP+V G + RP SAG C AAAA AG PA A P P P
Sbjct: 107 PPSPRRPLVPAGPAPPAAKLRPPPEGSAGS--CAPVPAAAAVAAGPEPAPA-GPAKPAGP 163
Query: 73 P-----EEPAPAIAPG 83
P P PG
Sbjct: 164 AALAARAGPGPGPGPG 179
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAP-----AIAPGGSGEN 88
P+ +A P + AA AGAAPA A + P +P P A APG E+
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES 346
Query: 89 GDKASRAA 96
+ +AA
Sbjct: 347 PKRVVQAA 354
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP-----PEEPAPAIAPGGSGEN 88
P++ A PG A R G P +P P P PA + P G
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA 134
Query: 89 GDKASRAACCNPVLIRPRFIPARP 112
G A A V P PA P
Sbjct: 135 GSCAPVPAAA-AVAAGPEPAPAGP 157
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 28 RNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
R R ++ + G + A AA AAPA +P EPP PA PGG G
Sbjct: 46 RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEG-APGAAPEPP--PAGRARPGGGG 101
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 30 SNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEP---PEEPAPA----IAP 82
+ ++P+S GP +C + A A R A+ A E P P+ P+ PA P
Sbjct: 372 AEAKPTS--PTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPQWGKPAQPKLEGP 429
Query: 83 GGSGENGDKASRAACCNPVLIRPRFI 108
G + G K + A C + + P ++
Sbjct: 430 GAPTQGGSKEAPAGCSDAQPVGPEYV 455
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGEN 88
P+ A P +A+ + + P P P PP++ P AP GSG +
Sbjct: 193 PTCTAYTAPSYPNYDASVYSAASPFYPPA--QPPPPPGPPQQLPPPPAPAGSGSS 245
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 33 RPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAP---------- 82
+P R + P R A A A AAP +P P P APA AP
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 83 --GGSGENGDKASRAACCNPVLIRPRFIPARP 112
G + G +A RAA L P PA P
Sbjct: 160 PSPGPAQPGPRAQRAA----PLAAPPPAPAAP 187
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 41 GPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
G G + + AA + G + A PD+P P P PG G
Sbjct: 398 GSGTRQVFSMAAMNKEGGTASVATGPDSPSPVPLPPGKPALPGADG 443
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 42 PGLCRTEAAAAATRAGAAPATAESPDTPE 70
P L E AAAAT A AA ++A SP E
Sbjct: 5 PALPPPETAAAATTAAAASSSAASPHYQE 33
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIA 81
P S A PG R + AA APA + P P P PA+A
Sbjct: 159 PPSPGPAQPGP-RAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 9 KSTEPCDELRPMV--TLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGA-APATAES 65
+S P RP + G + R RP+S A A PGL +AA AA G AP A
Sbjct: 1316 RSASPQRAARPRLEEAPGGQGRPEAGRPASEARA-PGLAAADAADAARAGGKEAPRAAAG 1374
Query: 66 PDTPEEPPEEPAPAIA-PGGSGENGDKASRAA 96
+ APA A PGG G +A A
Sbjct: 1375 SELCRREGPGAAPAFAGPGGGGSGALEAEGRA 1406
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 6 PMLKSTEPCDELR------PMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAA 59
P L + + D R P G + ++ A AGPG + A A RAGA
Sbjct: 1350 PGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGAR 1409
Query: 60 PATAESPDTPEEPPEEPAPAIAPG 83
P P P A A+APG
Sbjct: 1410 AGPRPGPRPPGGAPARKA-AVAPG 1432
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 16 ELRPMVTLGWRMRNSNSRPSSRASAGPG-----LCRTEAAAAATRAGAAPATAESPDTPE 70
E R + G R + P ASAGP + ++E+ + +A AA A+ S
Sbjct: 29 EPRSLPAGGPAPRRTAPPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASGGSRAPRH 88
Query: 71 EPPEEPA------PAIAPGGSGENGDKASRAACCNP 100
P +P P P +GD +SR C P
Sbjct: 89 GPARDPGLPSRRLPGSCPATPQSSGDPSSRRPLCRP 124
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 5 RPMLKSTEPCDELRPMVTL---GWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPA 61
RP++ P + M+T+ WR ++N+ A+A AAA A + AA +
Sbjct: 170 RPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVS 229
Query: 62 TAESPDTPEEPPEEPAPAIA 81
+A +P P PP P P A
Sbjct: 230 SA-TPIAPSGPPALPPPPAA 248
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 5 RPMLKSTEPCDELRPMVTL---GWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPA 61
RP++ P + M+T+ WR ++N+ A+A AAA A + AA +
Sbjct: 170 RPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVS 229
Query: 62 TAESPDTPEEPPEEPAPAIA 81
+A +P P PP P P A
Sbjct: 230 SA-TPIAPSGPPALPPPPAA 248
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 5 RPMLKSTEPCDELRPMVTL---GWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPA 61
RP++ P + M+T+ WR ++N+ A+A AAA A + AA +
Sbjct: 229 RPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVS 288
Query: 62 TAESPDTPEEPPEEPAPAIA 81
+A +P P PP P P A
Sbjct: 289 SA-TPIAPSGPPALPPPPAA 307
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 26 RMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESP----------DTPEEPPEE 75
R R +SRP +A A P T+ GAA E+P +TP +PPE
Sbjct: 344 RRRRKSSRP--QAKAAPRAYSDHDDRWETKEGAASPAPETPQPTSPETSPKETPMQPPEI 401
Query: 76 PAPAIAP 82
PAPA P
Sbjct: 402 PAPAHRP 408
>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
[Homo sapiens]
Length = 410
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 6 PMLKSTEPCDELRPMVTLGWRMRNSNS--RPSSRASAGPGLCRTEAAAAATRAGAA---P 60
P EP + L LGW R R A C A GAA P
Sbjct: 196 PFTGIPEPSEPLAGAGGLGWGGRGYEDYRRSGPPAPLALSTCVVRFAKTGALRGAALGPP 255
Query: 61 ATAESPDT-------PEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIR 104
A +P T P PP P P+ AP + ++A+R C + R
Sbjct: 256 AALPAPLTEAAPPAPPARPPPGPGPSSAPAKASPEAEEAARCVHCRALFRR 306
>gi|62945417 dystrophia myotonica-containing WD repeat motif
protein [Homo sapiens]
Length = 674
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 52 AATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSG 86
AA R+G A A P P +PP PA A PG +G
Sbjct: 41 AARRSGPASAQTPVPPQPPQPPPGPASASGPGAAG 75
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDT-----PEEPPEEPAPAIAPGG-SGEN 88
+++ SA AAAA A APA A + DT P PP P P AP +
Sbjct: 91 AAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAPP 150
Query: 89 GDKASRAACCNPVLIRP 105
A+ AA ++ P
Sbjct: 151 ASAATIAAAAATAVVAP 167
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 35 SSRASAGPGLCRTEAAAAATRAGAAPATAESPDT-----PEEPPEEPAPAIAPGG-SGEN 88
+++ SA AAAA A APA A + DT P PP P P AP +
Sbjct: 91 AAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAPAAEAAPP 150
Query: 89 GDKASRAACCNPVLIRP 105
A+ AA ++ P
Sbjct: 151 ASAATIAAAAATAVVAP 167
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 32 SRPSSRASA--GPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPA---PAIAPG 83
SRP S AS GP AA +A A AAPA A +P + + A PA+APG
Sbjct: 293 SRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPG 349
Score = 29.3 bits (64), Expect = 0.70
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 27/107 (25%)
Query: 7 MLKSTEPCDELRPMVTL----GWRMRNSNSRPS------SRASAGPGLCRTEAAAAATRA 56
M+ S C +L + ++ G R SN S SR++ P L + ++ A +
Sbjct: 849 MIDSVMSCQQLTGLKSVENGSGESDRLSNDSSSAVGDLESRSAGSPALSESSSSQALS-- 906
Query: 57 GAAPATAES-------PDTPEEPPEEP-------APAIAPGGSGENG 89
AP+ ES PEEP E P +PA APG G G
Sbjct: 907 -PAPSNGESFRSKSPGLGAPEEPQEIPLKTERPDSPAAAPGSGGAPG 952
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 1 MKLDRPMLKSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPG--------------LCR 46
M L + + + +++R V L M+ RPS +A P L
Sbjct: 210 MALQQQQIHQLQLIEQIRSQVAL---MQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPL 266
Query: 47 TEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGENGDKASRAACCNPVLIRPR 106
+ A AA AG+ PA + + + + A PGG E A+ +A P P
Sbjct: 267 SAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPA 326
Query: 107 FIPARPTS 114
P S
Sbjct: 327 PAPQSAAS 334
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 9 KSTEPCDELRPMVTLGWRMRNSNSRPSSRASAGPGLCRTEAAAAATRAGAAPATAESPDT 68
++++ EL PM + N R S A + E ++ P T + PD
Sbjct: 268 RNSKTIAELEPMTKI-------NPRGESEAMPREDATQLEVTLPSSIHETGPDTIQEPDY 320
Query: 69 PEEPPEEPAPAIAPG 83
+P +EPAP APG
Sbjct: 321 EPKPTQEPAPEPAPG 335
>gi|225543407 BTB domain protein BDPL [Homo sapiens]
Length = 485
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 34 PSSRASAGPGLCRTEAAAAATRAGAAPATAESPDTPEEPPEEPAPAIAPGGSGENGDKAS 93
P+S A+A L + A AA R A P + S P PP PA AP G N ++
Sbjct: 8 PASAAAAD--LANSNAGAAVGRK-AGPRSPPSAPAPAPPP----PAPAPPTLGNNHQESP 60
Query: 94 RAACCNPVL 102
CC P L
Sbjct: 61 GWRCCRPTL 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,900,901
Number of Sequences: 37866
Number of extensions: 331446
Number of successful extensions: 5881
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 4005
Number of HSP's gapped (non-prelim): 2063
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.